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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G45420
Z-value: 0.67
Transcription factors associated with AT2G45420
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G45420
|
AT2G45420 | LOB domain-containing protein 18 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD18 | arTal_v1_Chr2_+_18718348_18718348 | 0.28 | 3.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 1.29 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.05 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 0.75 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_5692920_5692992 Show fit | 0.64 |
AT5G17300.2
AT5G17300.1 |
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr1_+_23953099_23953099 Show fit | 0.57 |
AT1G64500.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 0.56 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_8827600_8827710 Show fit | 0.55 |
AT4G15430.2
AT4G15430.1 |
ERD (early-responsive to dehydration stress) family protein |
|
| arTal_v1_Chr3_-_17475274_17475274 Show fit | 0.52 |
AT3G47420.3
AT3G47420.1 AT3G47420.2 |
putative glycerol-3-phosphate transporter 1 |
|
| arTal_v1_Chr5_-_6976036_6976036 Show fit | 0.51 |
AT5G20630.1
|
germin 3 |
|
| arTal_v1_Chr2_-_9266393_9266393 Show fit | 0.49 |
AT2G21660.2
|
cold, circadian rhythm, and rna binding 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G45420
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | GO:0009819 | drought recovery(GO:0009819) |
| 0.1 | 1.2 | GO:0009608 | response to symbiont(GO:0009608) |
| 0.0 | 1.1 | GO:0010311 | lateral root formation(GO:0010311) |
| 0.0 | 1.0 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.0 | 0.9 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.0 | 0.8 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.0 | 0.7 | GO:0072505 | divalent inorganic anion homeostasis(GO:0072505) |
| 0.0 | 0.7 | GO:0071368 | cellular response to cytokinin stimulus(GO:0071368) |
| 0.1 | 0.6 | GO:0006527 | arginine catabolic process(GO:0006527) |
| 0.0 | 0.6 | GO:0071329 | cellular response to sucrose stimulus(GO:0071329) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 1.2 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 0.9 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 0.7 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.2 | 0.5 | GO:0016328 | lateral plasma membrane(GO:0016328) |
| 0.0 | 0.4 | GO:0030686 | 90S preribosome(GO:0030686) |
| 0.0 | 0.4 | GO:0032040 | small-subunit processome(GO:0032040) |
| 0.0 | 0.4 | GO:1903293 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.1 | 0.3 | GO:0042788 | polysomal ribosome(GO:0042788) |
| 0.1 | 0.3 | GO:0071818 | BAT3 complex(GO:0071818) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.2 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 1.1 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
| 0.0 | 1.1 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.2 | 1.0 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
| 0.1 | 1.0 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 1.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.0 | 0.9 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.0 | 0.9 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.1 | 0.8 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.0 | 0.8 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.0 | 0.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.3 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.0 | 0.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.0 | 0.1 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.0 | 0.1 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.0 | 0.1 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.0 | 0.1 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |