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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G45410
Z-value: 2.07
Transcription factors associated with AT2G45410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G45410
|
AT2G45410 | LOB domain-containing protein 19 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD19 | arTal_v1_Chr2_-_18713211_18713211 | 0.13 | 6.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 4.34 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 3.34 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 2.74 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 2.72 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 2.61 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 2.41 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_7406994_7406994 Show fit | 2.33 |
AT4G12480.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 2.09 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr5_-_5692920_5692992 Show fit | 2.08 |
AT5G17300.2
AT5G17300.1 |
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr2_+_16079679_16079679 Show fit | 2.04 |
AT2G38390.1
|
Peroxidase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G45410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.7 | 6.5 | GO:0009819 | drought recovery(GO:0009819) |
| 0.2 | 5.9 | GO:0009269 | response to desiccation(GO:0009269) |
| 0.2 | 5.5 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.1 | 5.5 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 5.3 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.4 | 5.1 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
| 0.0 | 5.1 | GO:0006412 | translation(GO:0006412) |
| 0.2 | 4.5 | GO:0010380 | regulation of chlorophyll biosynthetic process(GO:0010380) |
| 0.1 | 4.4 | GO:0006418 | tRNA aminoacylation for protein translation(GO:0006418) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 50.4 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 49.3 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.1 | 35.9 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 10.7 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 8.3 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 8.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 6.9 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 5.6 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.0 | 5.6 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 4.8 | GO:0005768 | endosome(GO:0005768) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 28.0 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.2 | 8.6 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 7.6 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.1 | 7.2 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
| 0.1 | 7.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.2 | 6.9 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 6.8 | GO:0016887 | ATPase activity(GO:0016887) |
| 0.1 | 6.4 | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.0 | 5.5 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 5.1 | GO:0015631 | tubulin binding(GO:0015631) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.6 | 1.7 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 1.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.4 | 0.8 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.2 | 0.8 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.3 | 0.6 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.2 | 0.6 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.1 | 0.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.6 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.0 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.7 | 3.5 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.3 | 1.8 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.2 | 1.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.3 | 1.1 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 1.0 | REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | Genes involved in Downstream signaling of activated FGFR |
| 0.1 | 0.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.9 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.2 | 0.7 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.2 | 0.7 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |