Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT2G43010
Z-value: 2.72
Transcription factors associated with AT2G43010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G43010
|
AT2G43010 | phytochrome interacting factor 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PIF4 | arTal_v1_Chr2_+_17886101_17886101 | -0.08 | 7.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 2.70 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr1_-_2711000_2711000 Show fit | 2.61 |
AT1G08560.1
|
syntaxin of plants 111 |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 2.48 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr5_-_24116220_24116220 Show fit | 2.39 |
AT5G59870.1
|
histone H2A 6 |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 2.38 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr3_-_20142763_20142763 Show fit | 2.37 |
AT3G54400.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 2.36 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_-_30173109_30173109 Show fit | 2.02 |
AT1G80240.1
|
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr1_-_7089606_7089606 Show fit | 2.02 |
AT1G20450.1
AT1G20450.2 |
Dehydrin family protein |
|
| arTal_v1_Chr3_+_9396272_9396272 Show fit | 1.98 |
AT3G25730.1
|
ethylene response DNA binding factor 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G43010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 10.2 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.1 | 5.4 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 5.1 | GO:0006887 | exocytosis(GO:0006887) |
| 1.2 | 4.9 | GO:0046498 | S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498) |
| 0.4 | 4.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 4.5 | GO:0030422 | production of siRNA involved in RNA interference(GO:0030422) |
| 0.1 | 4.4 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 4.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 3.9 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.1 | 3.5 | GO:0006012 | galactose metabolic process(GO:0006012) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 19.8 | GO:0055044 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 14.9 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 14.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 9.2 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 7.8 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 7.6 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 7.4 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 5.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 5.1 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 4.9 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.4 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.0 | 7.4 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.5 | 6.0 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.0 | 5.1 | GO:0016757 | transferase activity, transferring glycosyl groups(GO:0016757) |
| 1.6 | 4.9 | GO:0016802 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
| 0.1 | 4.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 4.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 4.4 | GO:0033558 | histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558) |
| 0.4 | 3.7 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
| 0.0 | 3.7 | GO:0030599 | pectinesterase activity(GO:0030599) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 4.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 0.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.6 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 0.1 | 0.4 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.1 | 0.4 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 4.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 1.4 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.4 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.1 | 0.4 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.0 | 0.1 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.0 | 0.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |