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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G43010

Z-value: 2.72

Transcription factors associated with AT2G43010

Gene Symbol Gene ID Gene Info
AT2G43010
AT2G43010 phytochrome interacting factor 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PIF4arTal_v1_Chr2_+_17886101_17886101-0.087.8e-01Click!

Activity profile of AT2G43010 motif

Sorted Z-values of AT2G43010 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_8589754 2.70 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr1_-_2711000 2.61 AT1G08560.1
SYP111
syntaxin of plants 111
Chr1_-_10164452 2.48 AT1G29090.1
AT1G29090
Cysteine proteinases superfamily protein
Chr5_-_24116220 2.39 AT5G59870.1
HTA6
histone H2A 6
Chr1_+_209208 2.38 AT1G01580.1
FRO2
ferric reduction oxidase 2
Chr3_-_20142763 2.37 AT3G54400.1
AT3G54400
Eukaryotic aspartyl protease family protein
Chr1_+_208995 2.36 AT1G01580.2
FRO2
ferric reduction oxidase 2
Chr1_-_30173109 2.02 AT1G80240.1
DGR1
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr1_-_7089606 2.02 AT1G20450.1
AT1G20450.2
ERD10
Dehydrin family protein
Chr3_+_9396272 1.98 AT3G25730.1
EDF3
ethylene response DNA binding factor 3
Chr4_-_9680389 1.97 AT4G17280.1
AT4G17280
Auxin-responsive family protein
Chr3_+_22935510 1.96 AT3G61930.1
AT3G61930
hypothetical protein
Chr3_-_9981620 1.96 AT3G27060.1
TSO2
Ferritin/ribonucleotide reductase-like family protein
Chr2_-_9428170 1.96 AT2G22170.1
PLAT2
Lipase/lipooxygenase, PLAT/LH2 family protein
Chr1_+_3019639 1.92 AT1G09350.1
GolS3
galactinol synthase 3
Chr1_+_3020221 1.91 AT1G09350.2
GolS3
galactinol synthase 3
Chr5_+_26462506 1.91 AT5G66230.1
AT5G66230
Chalcone-flavanone isomerase family protein
Chr5_+_1119937 1.88 AT5G04120.1
AT5G04120
Phosphoglycerate mutase family protein
Chr1_-_3880391 1.87 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr5_+_7718118 1.85 AT5G23020.1
IMS2
2-isopropylmalate synthase 2
Chr3_+_4408925 1.84 AT3G13520.1
AGP12
arabinogalactan protein 12
Chr5_+_25721733 1.83 AT5G64310.1
AGP1
arabinogalactan protein 1
Chr2_-_9564850 1.81 AT2G22500.1
UCP5
uncoupling protein 5
Chr1_+_486800 1.80 AT1G02400.1
AT1G02400.2
GA2OX6
gibberellin 2-oxidase 6
Chr2_-_8501294 1.80 AT2G19670.1
PRMT1A
protein arginine methyltransferase 1A
Chr1_-_5765798 1.79 AT1G16850.1
AT1G16850
transmembrane protein
Chr5_-_2173015 1.78 AT5G07000.1
ST2B
sulfotransferase 2B
Chr3_-_11269228 1.77 AT3G29360.2
AT3G29360.1
UGD2
UDP-glucose 6-dehydrogenase family protein
Chr4_-_18472048 1.75 AT4G39800.1
MIPS1
myo-inositol-1-phosphate synthase 1
Chr1_-_7086873 1.75 AT1G20440.1
COR47
cold-regulated 47
Chr5_-_19563832 1.73 AT5G48250.1
BBX8
B-box type zinc finger protein with CCT domain-containing protein
Chr3_-_1758807 1.73 AT3G05890.1
RCI2B
Low temperature and salt responsive protein family
Chr5_+_26894778 1.72 AT5G67400.1
RHS19
root hair specific 19
Chr4_-_17777445 1.72 AT4G37800.1
XTH7
xyloglucan endotransglucosylase/hydrolase 7
Chr5_+_7328870 1.69 AT5G22100.1
AT5G22100
RNA cyclase family protein
Chr2_+_17140183 1.67 AT2G41110.1
AT2G41110.2
CAM2
calmodulin 2
Chr4_-_11850436 1.63 AT4G22490.1
AT4G22490
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_11861994 1.60 AT2G27840.1
AT2G27840.4
HDT4
histone deacetylase-related / HD-like protein
Chr1_+_27054030 1.60 AT1G71880.1
SUC1
sucrose-proton symporter 1
Chr5_-_7859201 1.57 AT5G23350.1
AT5G23350
GRAM domain protein/ABA-responsive-like protein
Chr4_-_17041131 1.56 AT4G36010.2
AT4G36010
Pathogenesis-related thaumatin superfamily protein
Chr3_-_10590685 1.55 AT3G28340.1
GATL10
galacturonosyltransferase-like 10
Chr2_+_11862528 1.54 AT2G27840.2
HDT4
histone deacetylase-related / HD-like protein
Chr1_-_8961183 1.53 AT1G25510.1
AT1G25510
Eukaryotic aspartyl protease family protein
Chr5_+_22312976 1.52 AT5G54970.1
AT5G54970
hypothetical protein
Chr1_-_10139228 1.52 AT1G29050.1
TBL38
TRICHOME BIREFRINGENCE-LIKE 38
Chr4_-_17041326 1.51 AT4G36010.1
AT4G36010
Pathogenesis-related thaumatin superfamily protein
Chr5_-_990630 1.50 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr4_-_8050157 1.50 AT4G13930.1
SHM4
serine hydroxymethyltransferase 4
Chr4_-_1046993 1.50 AT4G02380.2
AT4G02380.1
AT4G02380.3
SAG21
senescence-associated gene 21
Chr1_-_27998821 1.49 AT1G74500.1
BS1
activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Chr5_+_19116719 1.49 AT5G47060.1
AT5G47060.2
AT5G47060
hypothetical protein (DUF581)
Chr1_-_19649340 1.48 AT1G52750.1
AT1G52750
alpha/beta-Hydrolases superfamily protein
Chr4_+_13074090 1.48 AT4G25630.1
FIB2
fibrillarin 2
Chr5_-_5642623 1.47 AT5G17160.1
AT5G17160
aspartic/glutamic acid-rich protein
Chr2_+_6893949 1.47 AT2G15830.1
AT2G15830
hypothetical protein
Chr3_-_22881775 1.46 AT3G61820.1
AT3G61820
Eukaryotic aspartyl protease family protein
Chr1_+_618061 1.46 AT1G02810.1
AT1G02810
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_27498062 1.43 AT1G73120.1
AT1G73120
F-box/RNI superfamily protein
Chr5_-_23685805 1.41 AT5G58600.2
AT5G58600.1
PMR5
Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein (DUF828)
Chr2_+_14436589 1.41 AT2G34190.1
AT2G34190
Xanthine/uracil permease family protein
Chr3_-_7592373 1.41 AT3G21550.1
DMP2
transmembrane protein, putative (DUF679 domain membrane protein 2)
Chr4_-_13752103 1.40 AT4G27520.1
ENODL2
early nodulin-like protein 2
Chr2_+_11861806 1.39 AT2G27840.3
HDT4
histone deacetylase-related / HD-like protein
Chr3_-_18817405 1.38 AT3G50660.1
AT3G50660.2
DWF4
Cytochrome P450 superfamily protein
Chr2_-_15560755 1.37 AT2G37040.1
PAL1
PHE ammonia lyase 1
Chr1_+_23911024 1.36 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr3_+_17567126 1.36 AT3G47640.2
AT3G47640.3
PYE
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_5845220 1.35 AT3G17130.1
AT3G17130
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_219104 1.35 AT3G01550.2
AT3G01550.1
PPT2
phosphoenolpyruvate (pep)/phosphate translocator 2
Chr2_+_15059763 1.34 AT2G35860.1
FLA16
FASCICLIN-like arabinogalactan protein 16 precursor
Chr1_-_5236886 1.33 AT1G15210.1
ABCG35
pleiotropic drug resistance 7
Chr2_+_7703805 1.33 AT2G17730.1
AT2G17730.2
NIP2
NEP-interacting protein 2
Chr1_-_25238036 1.32 AT1G67360.1
AT1G67360
Rubber elongation factor protein (REF)
Chr1_+_29373803 1.32 AT1G78090.1
AT1G78090.2
TPPB
trehalose-6-phosphate phosphatase
Chr5_+_4826141 1.30 AT5G14920.1
AT5G14920.2
AT5G14920
Gibberellin-regulated family protein
Chr4_+_14954204 1.30 AT4G30650.1
AT4G30650
Low temperature and salt responsive protein family
Chr3_+_19450506 1.30 AT3G52470.1
AT3G52470
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr1_+_27283628 1.29 AT1G72470.1
EXO70D1
exocyst subunit exo70 family protein D1
Chr5_-_22230500 1.29 AT5G54710.1
AT5G54710
Ankyrin repeat family protein
Chr5_-_16592381 1.28 AT5G41460.1
AT5G41460
transferring glycosyl group transferase (DUF604)
Chr5_+_25040540 1.28 AT5G62360.1
AT5G62360
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_4799612 1.28 AT3G14370.1
WAG2
Protein kinase superfamily protein
Chr5_+_568425 1.28 AT5G02540.1
AT5G02540
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_-_22230663 1.27 AT5G54710.2
AT5G54710
Ankyrin repeat family protein
Chr2_-_16908152 1.27 AT2G40475.1
ASG8
hypothetical protein
Chr1_-_25238216 1.27 AT1G67360.2
AT1G67360
Rubber elongation factor protein (REF)
Chr1_+_10321011 1.27 AT1G29500.1
AT1G29500
SAUR-like auxin-responsive protein family
Chr2_-_14078744 1.27 AT2G33210.2
AT2G33210.1
HSP60-2
heat shock protein 60-2
Chr3_-_1756924 1.27 AT3G05880.1
RCI2A
Low temperature and salt responsive protein family
Chr1_-_8940613 1.26 AT1G25450.1
KCS5
3-ketoacyl-CoA synthase 5
Chr3_+_8603212 1.26 AT3G23820.1
GAE6
UDP-D-glucuronate 4-epimerase 6
Chr2_+_18364652 1.26 AT2G44490.1
PEN2
Glycosyl hydrolase superfamily protein
Chr1_+_4105223 1.26 AT1G12110.1
NRT1.1
nitrate transporter 1.1
Chr1_-_8189220 1.25 AT1G23090.4
AT1G23090.1
AT1G23090.3
AT1G23090.2
AST91
sulfate transporter 91
Chr4_-_7493080 1.25 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr4_-_13016235 1.25 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
Chr2_+_8940833 1.25 AT2G20750.2
AT2G20750.1
EXPB1
expansin B1
Chr4_-_9250343 1.24 AT4G16370.1
OPT3
oligopeptide transporter
Chr4_+_8646150 1.24 AT4G15160.2
AT4G15160.1
AT4G15160
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_11810726 1.23 AT3G30180.1
BR6OX2
brassinosteroid-6-oxidase 2
Chr4_-_14545310 1.23 AT4G29700.1
AT4G29700
Alkaline-phosphatase-like family protein
Chr1_-_8153530 1.23 AT1G23020.2
AT1G23020.7
AT1G23020.6
AT1G23020.5
AT1G23020.4
AT1G23020.3
AT1G23020.1
FRO3
ferric reduction oxidase 3
Chr5_-_8570358 1.22 AT5G24910.1
AT5G24910.2
CYP714A1
cytochrome P450, family 714, subfamily A, polypeptide 1
Chr5_-_23984656 1.22 AT5G59490.1
AT5G59490.2
AT5G59490
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_1843463 1.21 AT1G06080.1
AT1G06080.2
ADS1
delta 9 desaturase 1
Chr5_+_25485486 1.21 AT5G63660.1
PDF2.5
Scorpion toxin-like knottin superfamily protein
Chr2_-_9085909 1.20 AT2G21210.1
AT2G21210.2
AT2G21210
SAUR-like auxin-responsive protein family
Chr1_-_6735024 1.20 AT1G19450.1
AT1G19450
Major facilitator superfamily protein
Chr3_+_7507240 1.20 AT3G21330.1
AT3G21330
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_871308 1.19 AT1G03475.1
LIN2
Coproporphyrinogen III oxidase
Chr5_-_14623093 1.19 AT5G37010.1
AT5G37010
rho GTPase-activating protein
Chr5_-_6413259 1.19 AT5G19110.1
AT5G19110.2
AT5G19110
Eukaryotic aspartyl protease family protein
Chr5_-_5975087 1.18 AT5G18050.1
SAUR22
SAUR-like auxin-responsive protein family
Chr2_-_14373901 1.18 AT2G34020.1
AT2G34020.2
AT2G34020
Calcium-binding EF-hand family protein
Chr4_-_13194124 1.17 AT4G25990.1
AT4G25990.3
CIL
CCT motif family protein
Chr2_+_7516330 1.17 AT2G17290.2
AT2G17290.1
CPK6
Calcium-dependent protein kinase family protein
Chr1_+_6622055 1.17 AT1G19180.3
AT1G19180.2
JAZ1
jasmonate-zim-domain protein 1
Chr3_-_4008018 1.17 AT3G12610.1
DRT100
Leucine-rich repeat (LRR) family protein
Chr3_-_3197457 1.17 AT3G10320.1
AT3G10320
Glycosyltransferase family 61 protein
Chr5_-_20236195 1.17 AT5G49800.2
AT5G49800.1
AT5G49800
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr5_-_19272892 1.17 AT5G47500.1
PME5
Pectin lyase-like superfamily protein
Chr3_+_17567476 1.16 AT3G47640.1
PYE
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_7861737 1.16 AT5G23360.1
AT5G23360
GRAM domain-containing protein / ABA-responsive protein-like protein
Chr3_-_197564 1.16 AT3G01500.4
CA1
carbonic anhydrase 1
Chr5_-_4915976 1.16 AT5G15150.1
HB-3
homeobox 3
Chr3_-_197974 1.16 AT3G01500.1
CA1
carbonic anhydrase 1
Chr5_+_2560328 1.14 AT5G07990.1
TT7
Cytochrome P450 superfamily protein
Chr5_+_19839663 1.14 AT5G48940.1
AT5G48940
Leucine-rich repeat transmembrane protein kinase family protein
Chr5_-_17119741 1.13 AT5G42690.3
AT5G42690.1
AT5G42690.4
AT5G42690.2
AT5G42690
transcription factor, putative (Protein of unknown function, DUF547)
Chr4_-_10464238 1.13 AT4G19120.3
AT4G19120.1
ERD3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_198160 1.13 AT3G01500.2
CA1
carbonic anhydrase 1
Chr5_-_19669920 1.13 AT5G48540.1
AT5G48540
receptor-like protein kinase-related family protein
Chr4_+_13275200 1.13 AT4G26200.1
ACS7
1-amino-cyclopropane-1-carboxylate synthase 7
Chr1_+_17065858 1.12 AT1G45130.2
BGAL5
beta-galactosidase 5
Chr1_-_26253687 1.12 AT1G69770.1
CMT3
chromomethylase 3
Chr5_+_1536057 1.12 AT5G05180.2
AT5G05180.1
AT5G05180.3
AT5G05180
myosin heavy chain, striated protein
Chr3_-_198664 1.12 AT3G01500.3
CA1
carbonic anhydrase 1
Chr5_+_3111945 1.12 AT5G09970.1
CYP78A7
cytochrome P450, family 78, subfamily A, polypeptide 7
Chr4_-_17181261 1.11 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr1_-_7137828 1.11 AT1G20610.1
CYCB2%3B3
Cyclin B2;3
Chr3_-_20366840 1.11 AT3G54960.2
AT3G54960.1
PDIL1-3
PDI-like 1-3
Chr2_-_14216054 1.11 AT2G33560.1
AT2G33560.2
BUBR1
BUB1-related (BUB1: budding uninhibited by benzymidazol 1)
Chr3_+_23420145 1.10 AT3G63430.2
AT3G63430.1
TRM5
zinc finger CCCH domain protein
Chr4_-_17181466 1.10 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr1_-_37757 1.10 AT1G01060.3
AT1G01060.2
AT1G01060.4
AT1G01060.1
AT1G01060.6
AT1G01060.7
AT1G01060.5
LHY
Homeodomain-like superfamily protein
Chr4_+_8054861 1.09 AT4G13940.4
AT4G13940.3
AT4G13940.2
HOG1
S-adenosyl-L-homocysteine hydrolase
Chr3_-_202754 1.08 AT3G01513.1
AT3G01513
hypothetical protein
Chr1_-_11548016 1.08 AT1G32100.1
PRR1
pinoresinol reductase 1
Chr4_+_8054673 1.08 AT4G13940.1
HOG1
S-adenosyl-L-homocysteine hydrolase
Chr2_+_100484 1.07 AT2G01150.2
AT2G01150.3
AT2G01150.1
RHA2B
RING-H2 finger protein 2B
Chr5_+_463073 1.07 AT5G02260.1
EXPA9
expansin A9
Chr5_+_23701392 1.07 AT5G58660.1
AT5G58660.2
AT5G58660
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_6621777 1.06 AT1G19180.1
JAZ1
jasmonate-zim-domain protein 1
Chr5_+_8042853 1.06 AT5G23860.1
AT5G23860.2
TUB8
tubulin beta 8
Chr3_+_18249663 1.05 AT3G49220.2
AT3G49220.3
AT3G49220.1
AT3G49220
Plant invertase/pectin methylesterase inhibitor superfamily
Chr4_-_6734454 1.05 AT4G11010.1
NDPK3
nucleoside diphosphate kinase 3
Chr1_+_7404328 1.04 AT1G21140.1
AT1G21140
Vacuolar iron transporter (VIT) family protein
Chr5_-_9000345 1.04 AT5G25820.1
AT5G25820
Exostosin family protein
Chr1_-_473160 1.04 AT1G02360.1
AT1G02360.2
AT1G02360.3
AT1G02360
Chitinase family protein
Chr3_-_8085669 1.04 AT3G22840.1
ELIP1
Chlorophyll A-B binding family protein
Chr2_-_14592140 1.04 AT2G34650.1
PID
Protein kinase superfamily protein
Chr4_-_13910995 1.04 AT4G27950.1
CRF4
cytokinin response factor 4
Chr5_+_25016860 1.04 AT5G62280.1
AT5G62280
DUF1442 family protein (DUF1442)
Chr3_+_10911132 1.03 AT3G28910.1
AT3G28910.2
MYB30
myb domain protein 30
Chr3_+_22129505 1.02 AT3G59900.1
ARGOS
auxin-regulated gene involved in organ size
Chr1_-_29647691 1.02 AT1G78860.1
AT1G78860
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr5_+_8584535 1.02 AT5G24920.1
GDU5
glutamine dumper 5
Chr1_+_2688880 1.01 AT1G08500.1
ENODL18
early nodulin-like protein 18
Chr1_-_22794714 1.01 AT1G61730.1
AT1G61730
DNA-binding storekeeper protein-related transcriptional regulator
Chr4_+_16135157 1.01 AT4G33560.1
AT4G33560
Wound-responsive family protein
Chr2_-_14740146 1.01 AT2G34930.1
AT2G34930
disease resistance family protein / LRR family protein
Chr1_+_29205047 1.01 AT1G77700.2
AT1G77700.3
AT1G77700
Pathogenesis-related thaumatin superfamily protein
Chr5_-_1293723 1.00 AT5G04530.1
KCS19
3-ketoacyl-CoA synthase 19
Chr2_-_14021185 1.00 AT2G33040.1
ATP3
gamma subunit of Mt ATP synthase
Chr5_-_2185972 1.00 AT5G07030.1
AT5G07030
Eukaryotic aspartyl protease family protein
Chr2_+_16079679 1.00 AT2G38390.1
AT2G38390
Peroxidase superfamily protein
Chr2_-_15993276 1.00 AT2G38170.2
AT2G38170.3
AT2G38170.1
CAX1
cation exchanger 1
Chr4_-_10464001 0.99 AT4G19120.2
ERD3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_26461152 0.99 AT5G66230.2
AT5G66220.1
AT5G66230
AT5G66220
Chalcone-flavanone isomerase family protein
Chalcone-flavanone isomerase family protein
Chr1_+_17065111 0.98 AT1G45130.1
BGAL5
beta-galactosidase 5
Chr1_-_7043392 0.98 AT1G20340.1
DRT112
Cupredoxin superfamily protein
Chr1_-_29919408 0.98 AT1G79530.1
GAPCP-1
glyceraldehyde-3-phosphate dehydrogenase of plastid 1
Chr4_-_13193620 0.98 AT4G25990.2
CIL
CCT motif family protein
Chr2_+_9089226 0.97 AT2G21220.1
AT2G21220
SAUR-like auxin-responsive protein family
Chr1_-_9304133 0.97 AT1G26850.3
AT1G26850.1
AT1G26850.2
AT1G26850
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_-_4312103 0.96 AT2G10940.2
AT2G10940.1
AT2G10940
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_6331398 0.96 AT1G18400.2
AT1G18400.1
BEE1
BR enhanced expression 1
Chr3_+_7275645 0.96 AT3G20810.1
AT3G20810.4
AT3G20810.2
AT3G20810.5
AT3G20810.3
JMJD5
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_21981902 0.96 AT5G54160.1
OMT1
O-methyltransferase 1
Chr3_+_20010927 0.96 AT3G54030.1
BSK6
kinase with tetratricopeptide repeat domain-containing protein
Chr5_-_26129547 0.96 AT5G65390.1
AGP7
arabinogalactan protein 7
Chr1_+_5574257 0.95 AT1G16300.1
GAPCP-2
glyceraldehyde-3-phosphate dehydrogenase of plastid 2
Chr1_+_6679281 0.94 AT1G19320.1
AT1G19320
Pathogenesis-related thaumatin superfamily protein
Chr4_-_17300367 0.94 AT4G36700.1
AT4G36700
RmlC-like cupins superfamily protein
Chr1_+_26038905 0.94 AT1G69260.1
AFP1
ABI five binding protein
Chr5_-_740319 0.94 AT5G03140.1
AT5G03140
Concanavalin A-like lectin protein kinase family protein
Chr2_-_16368570 0.94 AT2G39210.1
AT2G39210
Major facilitator superfamily protein
Chr4_+_8320538 0.93 AT4G14465.1
AHL20
AT-hook motif nuclear-localized protein 20
Chr4_+_12264462 0.93 AT4G23500.1
AT4G23500
Pectin lyase-like superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G43010

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 4.9 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.7 2.2 GO:0010446 response to alkaline pH(GO:0010446)
0.6 1.8 GO:0015709 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.6 1.8 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.6 1.7 GO:0042353 fucose biosynthetic process(GO:0042353)
0.5 1.5 GO:1990258 box C/D snoRNA 3'-end processing(GO:0000494) peptidyl-glutamine methylation(GO:0018364) box C/D snoRNA metabolic process(GO:0033967) box C/D snoRNA processing(GO:0034963) histone glutamine methylation(GO:1990258)
0.5 1.9 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.4 1.8 GO:0006024 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.4 1.1 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.4 1.5 GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity(GO:0043433)
0.4 1.8 GO:0046622 positive regulation of organ growth(GO:0046622)
0.4 4.6 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.3 1.3 GO:0015714 phosphoenolpyruvate transport(GO:0015714)
0.3 1.0 GO:1990532 stress response to nickel ion(GO:1990532)
0.3 2.0 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.3 1.3 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.3 1.4 GO:0060919 auxin influx(GO:0060919)
0.3 1.1 GO:0030026 cellular manganese ion homeostasis(GO:0030026)
0.3 1.4 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.3 0.8 GO:0080051 cutin transport(GO:0080051)
0.3 0.8 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.3 10.2 GO:0055072 iron ion homeostasis(GO:0055072)
0.2 1.5 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.2 0.7 GO:0032196 transposition(GO:0032196)
0.2 2.4 GO:0009652 thigmotropism(GO:0009652)
0.2 1.2 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.2 1.8 GO:0045487 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.2 0.9 GO:0016139 glycoside catabolic process(GO:0016139)
0.2 0.4 GO:0015783 GDP-fucose transport(GO:0015783)
0.2 1.1 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.2 1.3 GO:0070542 response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398)
0.2 1.5 GO:0006565 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.2 0.6 GO:0010246 rhamnogalacturonan I biosynthetic process(GO:0010246)
0.2 1.3 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.2 0.6 GO:1901881 positive regulation of protein depolymerization(GO:1901881)
0.2 0.6 GO:0090224 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
0.2 2.4 GO:0070828 heterochromatin organization(GO:0070828)
0.2 0.8 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.2 3.9 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.2 0.8 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.2 0.4 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
0.2 0.7 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.2 1.1 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.2 0.5 GO:0016540 protein autoprocessing(GO:0016540)
0.2 1.1 GO:0006228 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.2 2.4 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.2 0.5 GO:0030970 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.2 1.1 GO:0051952 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.2 0.5 GO:1990641 response to iron ion starvation(GO:1990641)
0.2 1.9 GO:0080144 amino acid homeostasis(GO:0080144)
0.2 0.6 GO:0048639 positive regulation of developmental growth(GO:0048639)
0.2 1.1 GO:0015689 molybdate ion transport(GO:0015689)
0.2 1.4 GO:0010358 leaf shaping(GO:0010358)
0.2 0.6 GO:0048480 stigma development(GO:0048480)
0.1 0.6 GO:0050878 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.1 0.9 GO:0006471 protein ADP-ribosylation(GO:0006471) protein poly-ADP-ribosylation(GO:0070212)
0.1 1.3 GO:0071490 cellular response to far red light(GO:0071490)
0.1 1.0 GO:0010148 transpiration(GO:0010148)
0.1 1.5 GO:1990066 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.1 0.9 GO:0010019 chloroplast-nucleus signaling pathway(GO:0010019)
0.1 0.4 GO:0051101 regulation of DNA binding(GO:0051101)
0.1 3.5 GO:0006012 galactose metabolic process(GO:0006012)
0.1 1.5 GO:0006265 DNA topological change(GO:0006265)
0.1 0.4 GO:0002164 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.1 1.5 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.1 1.2 GO:0042493 response to drug(GO:0042493)
0.1 0.2 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.1 0.4 GO:0080168 abscisic acid transport(GO:0080168)
0.1 1.2 GO:1902456 regulation of stomatal opening(GO:1902456)
0.1 0.8 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.1 2.2 GO:0006108 malate metabolic process(GO:0006108)
0.1 0.8 GO:0032435 mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032435) negative regulation of sister chromatid segregation(GO:0033046) negative regulation of mitotic sister chromatid segregation(GO:0033048) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) negative regulation of chromosome segregation(GO:0051985) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174) negative regulation of proteasomal protein catabolic process(GO:1901799) negative regulation of metaphase/anaphase transition of cell cycle(GO:1902100) negative regulation of proteolysis involved in cellular protein catabolic process(GO:1903051) negative regulation of cellular protein catabolic process(GO:1903363) negative regulation of mitotic sister chromatid separation(GO:2000816)
0.1 0.7 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.1 0.4 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.1 0.8 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.1 5.4 GO:0009631 cold acclimation(GO:0009631)
0.1 1.5 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 0.3 GO:0006210 thymine catabolic process(GO:0006210) uracil catabolic process(GO:0006212) beta-alanine biosynthetic process(GO:0019483) thymine metabolic process(GO:0019859)
0.1 1.2 GO:0010274 hydrotropism(GO:0010274)
0.1 1.1 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.1 0.6 GO:0009819 drought recovery(GO:0009819)
0.1 1.2 GO:0006574 valine catabolic process(GO:0006574)
0.1 0.4 GO:0007043 cell-cell junction assembly(GO:0007043)
0.1 4.5 GO:0030422 production of siRNA involved in RNA interference(GO:0030422)
0.1 0.4 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.1 0.4 GO:0006103 2-oxoglutarate metabolic process(GO:0006103)
0.1 0.6 GO:1900425 negative regulation of defense response to bacterium(GO:1900425)
0.1 0.3 GO:0045839 negative regulation of mitotic nuclear division(GO:0045839)
0.1 1.3 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.1 3.1 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.1 4.4 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.1 0.5 GO:0051014 actin filament severing(GO:0051014)
0.1 1.0 GO:0070076 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.1 0.9 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.1 0.6 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.1 1.4 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.1 0.5 GO:0046209 nitric oxide metabolic process(GO:0046209)
0.1 5.1 GO:0006887 exocytosis(GO:0006887)
0.1 0.5 GO:0009446 putrescine metabolic process(GO:0009445) putrescine biosynthetic process(GO:0009446) putrescine biosynthetic process from arginine(GO:0033388)
0.1 1.3 GO:0046688 response to copper ion(GO:0046688)
0.1 1.0 GO:0009299 mRNA transcription(GO:0009299)
0.1 0.4 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 0.2 GO:0034389 lipid particle organization(GO:0034389)
0.1 0.8 GO:0009231 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231)
0.1 1.4 GO:0006754 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 0.7 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 1.5 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.1 0.2 GO:0030856 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.1 1.0 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.1 0.5 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.1 0.9 GO:0006521 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.1 0.4 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.1 2.4 GO:0019761 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.1 0.3 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.7 GO:0070475 rRNA base methylation(GO:0070475)
0.0 0.9 GO:0051553 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.0 0.3 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.0 0.4 GO:0030307 positive regulation of cell growth(GO:0030307)
0.0 0.7 GO:0007584 response to nutrient(GO:0007584)
0.0 2.4 GO:0048825 cotyledon development(GO:0048825)
0.0 4.0 GO:0045490 pectin catabolic process(GO:0045490)
0.0 1.2 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.3 GO:0002832 negative regulation of response to biotic stimulus(GO:0002832) negative regulation of response to external stimulus(GO:0032102)
0.0 0.1 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.6 GO:0009142 nucleoside triphosphate biosynthetic process(GO:0009142)
0.0 0.2 GO:0046168 glycerol-3-phosphate catabolic process(GO:0046168)
0.0 1.3 GO:0042026 protein refolding(GO:0042026)
0.0 0.6 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.5 GO:0032544 plastid translation(GO:0032544)
0.0 0.6 GO:0000165 MAPK cascade(GO:0000165)
0.0 0.2 GO:0008295 spermidine biosynthetic process(GO:0008295)
0.0 0.2 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458) positive regulation of photomorphogenesis(GO:2000306)
0.0 1.3 GO:0009838 abscission(GO:0009838)
0.0 0.2 GO:0042550 photosystem I stabilization(GO:0042550)
0.0 0.5 GO:0009901 anther dehiscence(GO:0009901)
0.0 0.1 GO:0022615 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.6 GO:0046451 lysine biosynthetic process via diaminopimelate(GO:0009089) diaminopimelate metabolic process(GO:0046451)
0.0 0.1 GO:0044236 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.0 0.4 GO:0048359 mucilage metabolic process involved in seed coat development(GO:0048359)
0.0 0.2 GO:0018871 1-aminocyclopropane-1-carboxylate metabolic process(GO:0018871) 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.0 0.4 GO:0080086 stamen filament development(GO:0080086)
0.0 1.7 GO:0009846 pollen germination(GO:0009846)
0.0 1.1 GO:0051225 spindle assembly(GO:0051225)
0.0 0.7 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 2.1 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 1.0 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 0.8 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.0 0.2 GO:0080190 lateral growth(GO:0080190)
0.0 0.7 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.4 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 2.0 GO:0019760 S-glycoside metabolic process(GO:0016143) glycosinolate metabolic process(GO:0019757) glucosinolate metabolic process(GO:0019760)
0.0 0.6 GO:0043068 positive regulation of programmed cell death(GO:0043068)
0.0 1.1 GO:0010286 heat acclimation(GO:0010286)
0.0 3.2 GO:0006486 protein glycosylation(GO:0006486) glycoprotein biosynthetic process(GO:0009101) macromolecule glycosylation(GO:0043413)
0.0 0.9 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.5 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 0.9 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.2 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.0 0.4 GO:0019374 galactolipid metabolic process(GO:0019374)
0.0 0.0 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.0 0.5 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.3 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 0.9 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 1.6 GO:0022900 electron transport chain(GO:0022900)
0.0 0.1 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.0 1.0 GO:0009809 lignin biosynthetic process(GO:0009809)
0.0 0.4 GO:0030042 actin filament depolymerization(GO:0030042)
0.0 0.7 GO:0010075 regulation of meristem growth(GO:0010075)
0.0 0.1 GO:0060631 regulation of meiosis I(GO:0060631)
0.0 0.2 GO:0048575 short-day photoperiodism(GO:0048572) short-day photoperiodism, flowering(GO:0048575)
0.0 0.5 GO:0042335 cuticle development(GO:0042335)
0.0 0.1 GO:0006821 chloride transport(GO:0006821)
0.0 0.4 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.0 0.2 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 1.5 GO:0000226 microtubule cytoskeleton organization(GO:0000226)
0.0 0.1 GO:0010206 photosystem II repair(GO:0010206)
0.0 0.4 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.7 GO:0009627 systemic acquired resistance(GO:0009627)
0.0 0.3 GO:0007186 G-protein coupled receptor signaling pathway(GO:0007186)
0.0 0.4 GO:0000911 cytokinesis by cell plate formation(GO:0000911)
0.0 0.4 GO:0009561 megagametogenesis(GO:0009561)
0.0 0.6 GO:0006997 nucleus organization(GO:0006997)
0.0 0.1 GO:0010315 auxin efflux(GO:0010315)
0.0 0.7 GO:0009742 brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) cellular response to steroid hormone stimulus(GO:0071383)
0.0 0.3 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.4 GO:0010311 lateral root formation(GO:0010311)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.9 GO:0005828 kinetochore microtubule(GO:0005828)
0.2 0.9 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.2 1.7 GO:0009517 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.2 0.8 GO:0009897 external side of plasma membrane(GO:0009897)
0.2 2.0 GO:0045298 tubulin complex(GO:0045298)
0.1 1.5 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.1 2.4 GO:0000792 heterochromatin(GO:0000792)
0.1 5.1 GO:0010319 stromule(GO:0010319)
0.1 1.0 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.1 0.7 GO:0009986 cell surface(GO:0009986)
0.1 0.5 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.1 0.3 GO:0031357 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.1 1.3 GO:0031350 intrinsic component of plastid membrane(GO:0031350) integral component of plastid membrane(GO:0031351)
0.1 1.0 GO:0005876 spindle microtubule(GO:0005876)
0.1 0.6 GO:0009513 etioplast(GO:0009513)
0.1 0.8 GO:0045283 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.1 2.6 GO:0009504 cell plate(GO:0009504)
0.1 0.2 GO:0030093 chloroplast photosystem I(GO:0030093)
0.1 2.1 GO:0000145 exocyst(GO:0000145)
0.1 2.0 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.1 1.5 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.1 0.8 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.1 14.6 GO:0031225 anchored component of membrane(GO:0031225)
0.0 7.6 GO:0099503 secretory vesicle(GO:0099503)
0.0 1.8 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 1.8 GO:0005764 lysosome(GO:0005764)
0.0 3.8 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.6 GO:0005880 nuclear microtubule(GO:0005880)
0.0 0.4 GO:0048226 Casparian strip(GO:0048226)
0.0 7.4 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 1.2 GO:0019898 extrinsic component of membrane(GO:0019898)
0.0 5.7 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.5 GO:0030125 clathrin vesicle coat(GO:0030125)
0.0 0.2 GO:0009331 glycerol-3-phosphate dehydrogenase complex(GO:0009331)
0.0 1.6 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 1.7 GO:0005770 late endosome(GO:0005770)
0.0 0.1 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.2 GO:0010168 ER body(GO:0010168)
0.0 0.8 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 9.2 GO:0005730 nucleolus(GO:0005730)
0.0 2.8 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 19.8 GO:0055044 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0 1.0 GO:0042644 chloroplast nucleoid(GO:0042644)
0.0 4.9 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 0.9 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.0 1.2 GO:0005874 microtubule(GO:0005874)
0.0 0.5 GO:0033176 proton-transporting V-type ATPase complex(GO:0033176)
0.0 0.6 GO:0030863 cortical cytoskeleton(GO:0030863)
0.0 0.1 GO:0033281 TAT protein transport complex(GO:0033281)
0.0 0.4 GO:0031201 SNARE complex(GO:0031201)
0.0 14.9 GO:0005794 Golgi apparatus(GO:0005794)
0.0 7.8 GO:0005783 endoplasmic reticulum(GO:0005783)
0.0 2.4 GO:0048046 apoplast(GO:0048046)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.9 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.7 2.0 GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.6 1.8 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.6 1.8 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.6 1.8 GO:0051738 xanthophyll binding(GO:0051738)
0.5 6.0 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.5 1.5 GO:0036009 protein-glutamine N-methyltransferase activity(GO:0036009) histone-glutamine methyltransferase activity(GO:1990259)
0.5 1.9 GO:0004647 phosphoserine phosphatase activity(GO:0004647)
0.5 1.8 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.4 1.8 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.4 3.7 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.4 1.2 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.4 1.5 GO:0032791 lead ion binding(GO:0032791)
0.4 3.5 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.4 1.1 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.4 1.8 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.4 1.1 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.3 1.4 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.3 1.4 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.3 3.4 GO:0016872 intramolecular lyase activity(GO:0016872)
0.3 1.3 GO:0050162 oxalate oxidase activity(GO:0050162)
0.3 1.2 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.3 0.9 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.3 0.9 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
0.3 3.3 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.3 1.0 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.3 1.5 GO:0051996 farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996)
0.2 1.2 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.2 1.9 GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
0.2 1.3 GO:0042879 phosphoglycerate transmembrane transporter activity(GO:0015120) aldonate transmembrane transporter activity(GO:0042879)
0.2 1.5 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.2 1.3 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.2 0.8 GO:0015245 fatty acid transporter activity(GO:0015245)
0.2 0.8 GO:0016040 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.2 0.6 GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase(GO:0008839)
0.2 0.9 GO:0003680 AT DNA binding(GO:0003680)
0.2 0.9 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.2 0.9 GO:0016724 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.2 1.3 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.2 0.5 GO:0010297 heteropolysaccharide binding(GO:0010297)
0.2 0.5 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.2 0.8 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.2 1.0 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.2 1.6 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.2 8.4 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.2 1.1 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.2 1.5 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.2 1.8 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.1 0.4 GO:0005458 GDP-mannose transmembrane transporter activity(GO:0005458)
0.1 0.6 GO:0008686 GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686)
0.1 0.8 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.1 1.7 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.1 0.4 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 4.4 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.1 1.2 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 4.4 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.1 0.8 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.1 0.7 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.1 3.2 GO:0004565 beta-galactosidase activity(GO:0004565)
0.1 4.4 GO:0033558 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.1 0.8 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.1 1.1 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.1 0.3 GO:0003838 sterol 24-C-methyltransferase activity(GO:0003838)
0.1 0.3 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 0.5 GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.1 0.1 GO:0051139 metal ion:proton antiporter activity(GO:0051139)
0.1 0.7 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 1.3 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.1 0.7 GO:0008169 C-methyltransferase activity(GO:0008169)
0.1 0.7 GO:0004356 glutamate-ammonia ligase activity(GO:0004356)
0.1 0.4 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 0.7 GO:0010011 auxin binding(GO:0010011)
0.1 1.7 GO:0019902 phosphatase binding(GO:0019902)
0.1 0.5 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 0.3 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.1 0.3 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.1 0.4 GO:0016675 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.1 0.9 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 2.2 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.8 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.1 0.6 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.1 0.3 GO:0050284 sinapate 1-glucosyltransferase activity(GO:0050284)
0.1 0.9 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.1 1.3 GO:0008146 sulfotransferase activity(GO:0008146)
0.1 1.4 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.1 0.2 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.1 0.7 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.1 0.4 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.1 0.4 GO:0019904 protein domain specific binding(GO:0019904)
0.1 2.5 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.1 0.6 GO:0051920 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.1 0.2 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.1 2.0 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 0.2 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 1.3 GO:0102338 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.1 0.6 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.1 0.7 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.1 0.4 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 0.2 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.1 2.1 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.0 0.4 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 2.8 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 0.6 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.2 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.0 1.4 GO:0008810 cellulase activity(GO:0008810)
0.0 0.3 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.0 0.6 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 3.5 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 3.7 GO:0030599 pectinesterase activity(GO:0030599)
0.0 1.1 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.5 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.6 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
0.0 1.1 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 0.8 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.0 0.4 GO:0008083 growth factor activity(GO:0008083)
0.0 0.2 GO:0051723 prenylcysteine methylesterase activity(GO:0010296) protein methylesterase activity(GO:0051723)
0.0 0.3 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 1.0 GO:0004568 chitinase activity(GO:0004568)
0.0 0.2 GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity(GO:0004367)
0.0 0.4 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding(GO:0005546)
0.0 0.7 GO:0015248 sterol transporter activity(GO:0015248)
0.0 1.5 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.2 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.3 GO:0030291 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.0 0.4 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.2 GO:0004766 spermidine synthase activity(GO:0004766)
0.0 0.4 GO:0008097 5S rRNA binding(GO:0008097)
0.0 3.7 GO:0009055 electron carrier activity(GO:0009055)
0.0 7.4 GO:0005509 calcium ion binding(GO:0005509)
0.0 1.1 GO:0016759 cellulose synthase activity(GO:0016759)
0.0 0.9 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.4 GO:0016018 cyclosporin A binding(GO:0016018)
0.0 0.2 GO:0004311 farnesyltranstransferase activity(GO:0004311)
0.0 0.5 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.5 GO:0030276 clathrin binding(GO:0030276)
0.0 0.7 GO:0051087 chaperone binding(GO:0051087)
0.0 3.7 GO:0005507 copper ion binding(GO:0005507)
0.0 0.2 GO:0002020 protease binding(GO:0002020)
0.0 0.1 GO:0060229 phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229)
0.0 2.6 GO:0003779 actin binding(GO:0003779)
0.0 0.1 GO:0008199 ferric iron binding(GO:0008199)
0.0 0.4 GO:0008378 galactosyltransferase activity(GO:0008378)
0.0 1.9 GO:0016684 oxidoreductase activity, acting on peroxide as acceptor(GO:0016684)
0.0 0.1 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.0 1.3 GO:0043130 ubiquitin binding(GO:0043130)
0.0 1.3 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.7 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.1 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 0.0 GO:0052736 beta-glucanase activity(GO:0052736)
0.0 0.1 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.7 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799)
0.0 2.0 GO:0003682 chromatin binding(GO:0003682)
0.0 0.9 GO:0043621 protein self-association(GO:0043621)
0.0 5.1 GO:0016757 transferase activity, transferring glycosyl groups(GO:0016757)
0.0 0.2 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 0.8 GO:0003777 microtubule motor activity(GO:0003777)
0.0 0.5 GO:0008173 RNA methyltransferase activity(GO:0008173)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 4.6 PID CMYB PATHWAY C-MYB transcription factor network
0.2 0.6 PID AURORA A PATHWAY Aurora A signaling
0.1 0.3 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway
0.1 0.4 PID CASPASE PATHWAY Caspase cascade in apoptosis
0.1 0.6 PID TELOMERASE PATHWAY Regulation of Telomerase
0.1 0.4 NABA CORE MATRISOME Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 4.6 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.1 0.4 REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
0.1 1.4 REACTOME PPARA ACTIVATES GENE EXPRESSION Genes involved in PPARA Activates Gene Expression
0.1 0.5 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.1 0.4 REACTOME CITRIC ACID CYCLE TCA CYCLE Genes involved in Citric acid cycle (TCA cycle)
0.0 0.1 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.0 0.1 REACTOME METABOLISM OF VITAMINS AND COFACTORS Genes involved in Metabolism of vitamins and cofactors