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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G43000
Z-value: 1.23
Transcription factors associated with AT2G43000
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G43000
|
AT2G43000 | NAC domain containing protein 42 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC042 | arTal_v1_Chr2_-_17882636_17882636 | 0.29 | 3.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 1.49 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.44 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_26772644_26772644 Show fit | 1.43 |
AT5G67080.1
|
mitogen-activated protein kinase kinase kinase 19 |
|
| arTal_v1_Chr5_-_17331646_17331646 Show fit | 1.41 |
AT5G43170.1
|
zinc-finger protein 3 |
|
| arTal_v1_Chr2_-_151971_151971 Show fit | 1.34 |
AT2G01300.1
|
mediator of RNA polymerase II transcription subunit |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 1.32 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr5_-_16236_16236 Show fit | 1.30 |
AT5G01040.1
|
laccase 8 |
|
| arTal_v1_Chr3_+_4462841_4462841 Show fit | 1.29 |
AT3G13650.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr1_-_749034_749034 Show fit | 1.22 |
AT1G03106.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 1.21 |
AT4G24570.1
|
dicarboxylate carrier 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G43000
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 13.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 3.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.5 | 2.9 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 2.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.6 | 2.8 | GO:0046218 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.5 | 2.8 | GO:0070982 | cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
| 0.1 | 2.7 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 2.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 2.5 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.1 | 2.5 | GO:0000038 | very long-chain fatty acid metabolic process(GO:0000038) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 28.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 17.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 2.3 | GO:0044421 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.0 | 2.0 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 1.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.1 | 1.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 1.4 | GO:0009986 | cell surface(GO:0009986) |
| 0.0 | 1.4 | GO:0099503 | secretory vesicle(GO:0099503) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.3 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.6 | 3.0 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 3.0 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.0 | 2.9 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.4 | 2.8 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.0 | 2.8 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.0 | 2.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.0 | 2.6 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.1 | 2.5 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.2 | 2.3 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.7 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.2 | 0.7 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.3 | 0.5 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.3 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.1 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.7 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.2 | 0.7 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 0.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.4 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.1 | 0.4 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.3 | REACTOME TELOMERE MAINTENANCE | Genes involved in Telomere Maintenance |
| 0.0 | 0.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |