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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G42430
Z-value: 1.09
Transcription factors associated with AT2G42430
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G42430
|
AT2G42430 | lateral organ boundaries-domain 16 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD16 | arTal_v1_Chr2_+_17663353_17663353 | -0.02 | 9.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 2.57 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 2.23 |
AT4G24570.1
|
dicarboxylate carrier 2 |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 1.95 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr1_+_15081952_15081952 Show fit | 1.73 |
AT1G40104.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_25661007_25661007 Show fit | 1.55 |
AT5G64120.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 1.53 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 1.50 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr2_+_15445294_15445294 Show fit | 1.46 |
AT2G36830.1
|
gamma tonoplast intrinsic protein |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 1.35 |
AT2G08986.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_11155453_11155460 Show fit | 1.32 |
AT4G20830.1
AT4G20830.2 |
FAD-binding Berberine family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G42430
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.0 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.4 | 2.6 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.7 | 2.2 | GO:0071422 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.5 | 1.5 | GO:0015840 | urea transport(GO:0015840) |
| 0.0 | 1.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 1.2 | GO:0060776 | simple leaf morphogenesis(GO:0060776) |
| 0.0 | 1.2 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 1.2 | GO:0048544 | recognition of pollen(GO:0048544) |
| 0.1 | 1.1 | GO:0070828 | heterochromatin organization(GO:0070828) |
| 0.0 | 1.1 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 2.8 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 1.1 | GO:0000792 | heterochromatin(GO:0000792) |
| 0.1 | 1.0 | GO:0043230 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
| 0.1 | 0.9 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
| 0.0 | 0.9 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 0.8 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 0.6 | GO:0042645 | mitochondrial nucleoid(GO:0042645) |
| 0.0 | 0.6 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.5 | GO:0034991 | nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.0 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.7 | 2.2 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.5 | 1.5 | GO:0015204 | urea transmembrane transporter activity(GO:0015204) |
| 0.0 | 1.5 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 1.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.4 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 1.2 | GO:0018685 | alkane 1-monooxygenase activity(GO:0018685) |
| 0.0 | 1.2 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.1 | 1.0 | GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830) |
| 0.0 | 1.0 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.4 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.0 | 0.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |