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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G40740
Z-value: 1.70
Transcription factors associated with AT2G40740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G40740
|
AT2G40740 | WRKY DNA-binding protein 55 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY55 | arTal_v1_Chr2_+_16997078_16997177 | 0.45 | 1.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 2.52 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 2.42 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 2.41 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 2.41 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.39 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 2.38 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 2.29 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 2.22 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 2.16 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.15 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G40740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 28.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 15.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 9.2 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.6 | 7.9 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 1.1 | 4.5 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 4.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 3.1 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.1 | 3.1 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.3 | 3.0 | GO:0070814 | hydrogen sulfide biosynthetic process(GO:0070814) |
| 0.2 | 2.9 | GO:0015865 | purine nucleotide transport(GO:0015865) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 69.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 13.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 8.3 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 6.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.5 | 2.5 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.0 | 2.5 | GO:0005740 | mitochondrial envelope(GO:0005740) |
| 0.0 | 2.3 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.0 | 2.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.6 | GO:0000145 | exocyst(GO:0000145) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 9.3 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 9.0 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 8.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 8.5 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 6.7 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.2 | 4.8 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 4.8 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.2 | 4.4 | GO:0005345 | purine nucleobase transmembrane transporter activity(GO:0005345) |
| 0.1 | 4.4 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 3.9 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 7.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 1.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.2 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.2 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.2 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.1 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 7.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 1.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.8 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.7 | REACTOME CLASS I MHC MEDIATED ANTIGEN PROCESSING PRESENTATION | Genes involved in Class I MHC mediated antigen processing & presentation |
| 0.2 | 0.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.5 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |