GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT2G40620
|
AT2G40620 | Basic-leucine zipper (bZIP) transcription factor family protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT2G40620 | arTal_v1_Chr2_-_16957183_16957183 | 0.45 | 1.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr4_-_7401951_7401951 Show fit | 1.72 |
AT4G12470.1
|
azelaic acid induced 1 |
|
arTal_v1_Chr1_+_28498821_28498821 Show fit | 1.31 |
AT1G75900.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
arTal_v1_Chr4_+_9028262_9028262 Show fit | 1.31 |
AT4G15910.1
|
drought-induced 21 |
|
arTal_v1_Chr1_-_9275193_9275193 Show fit | 1.25 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
arTal_v1_Chr1_-_28442429_28442435 Show fit | 1.22 |
AT1G75750.2
AT1G75750.1 |
GAST1 protein homolog 1 |
|
arTal_v1_Chr2_+_2763449_2763513 Show fit | 1.21 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
|
arTal_v1_Chr2_+_1966806_1966816 Show fit | 1.20 |
AT2G05380.1
AT2G05380.2 |
glycine-rich protein 3 short isoform |
|
arTal_v1_Chr2_+_1966610_1966610 Show fit | 1.20 |
AT2G05380.3
|
glycine-rich protein 3 short isoform |
|
arTal_v1_Chr5_-_19648362_19648362 Show fit | 1.19 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
arTal_v1_Chr1_-_698591_698591 Show fit | 1.16 |
AT1G03020.1
|
Thioredoxin superfamily protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.1 | 3.2 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
0.2 | 2.9 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
0.1 | 2.9 | GO:0002181 | cytoplasmic translation(GO:0002181) |
0.2 | 2.3 | GO:1903530 | regulation of secretion(GO:0051046) regulation of secretion by cell(GO:1903530) |
0.1 | 2.3 | GO:0070417 | cellular response to cold(GO:0070417) |
0.0 | 2.3 | GO:0009741 | response to brassinosteroid(GO:0009741) |
0.0 | 1.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
0.0 | 1.8 | GO:0009101 | protein glycosylation(GO:0006486) glycoprotein biosynthetic process(GO:0009101) macromolecule glycosylation(GO:0043413) |
0.2 | 1.5 | GO:0048579 | negative regulation of long-day photoperiodism, flowering(GO:0048579) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.7 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
0.0 | 7.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
0.0 | 6.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 4.0 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.2 | 3.6 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
0.0 | 2.7 | GO:0015935 | small ribosomal subunit(GO:0015935) |
0.0 | 2.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
0.0 | 2.1 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.1 | 1.9 | GO:0045298 | tubulin complex(GO:0045298) |
0.2 | 1.6 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.9 | GO:0004672 | protein kinase activity(GO:0004672) |
0.2 | 3.6 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
0.0 | 3.5 | GO:0005198 | structural molecule activity(GO:0005198) |
0.1 | 3.2 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.1 | 2.8 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
0.1 | 2.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
0.0 | 1.8 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.3 | 1.7 | GO:0004310 | farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996) |
0.1 | 1.6 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.1 | 1.6 | GO:0002020 | protease binding(GO:0002020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.6 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.2 | 0.5 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 0.5 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 0.4 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 0.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
0.1 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 0.2 | PID RAS PATHWAY | Regulation of Ras family activation |
0.1 | 0.2 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 2.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.2 | 1.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
0.2 | 0.8 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
0.2 | 0.6 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.1 | 0.6 | REACTOME SIGNALING BY SCF KIT | Genes involved in Signaling by SCF-KIT |
0.0 | 0.5 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
0.0 | 0.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.0 | 0.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 0.2 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |