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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G40620

Z-value: 1.36

Transcription factors associated with AT2G40620

Gene Symbol Gene ID Gene Info
AT2G40620
AT2G40620 Basic-leucine zipper (bZIP) transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT2G40620arTal_v1_Chr2_-_16957183_169571830.451.1e-01Click!

Activity profile of AT2G40620 motif

Sorted Z-values of AT2G40620 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_7401951 1.72 AT4G12470.1
AZI1
azelaic acid induced 1
Chr1_+_28498821 1.31 AT1G75900.1
AT1G75900
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_9028262 1.31 AT4G15910.1
DI21
drought-induced 21
Chr1_-_9275193 1.25 AT1G26790.1
AT1G26790
Dof-type zinc finger DNA-binding family protein
Chr1_-_28442429 1.22 AT1G75750.2
AT1G75750.1
GASA1
GAST1 protein homolog 1
Chr2_+_2763449 1.21 AT2G06850.1
AT2G06850.2
XTH4
xyloglucan endotransglucosylase/hydrolase 4
Chr2_+_1966806 1.20 AT2G05380.1
AT2G05380.2
GRP3S
glycine-rich protein 3 short isoform
Chr2_+_1966610 1.20 AT2G05380.3
GRP3S
glycine-rich protein 3 short isoform
Chr5_-_19648362 1.19 AT5G48490.1
AT5G48490
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_698591 1.16 AT1G03020.1
AT1G03020
Thioredoxin superfamily protein
Chr1_+_10477885 1.14 AT1G29930.1
CAB1
chlorophyll A/B binding protein 1
Chr1_+_3093644 1.11 AT1G09560.1
GLP5
germin-like protein 5
Chr5_-_4620551 1.07 AT5G14330.1
AT5G14330
transmembrane protein
Chr4_+_4886962 1.06 AT4G08040.1
ACS11
1-aminocyclopropane-1-carboxylate synthase 11
Chr5_+_22721373 1.05 AT5G56120.1
AT5G56120
RNA polymerase II elongation factor
Chr2_-_7496292 1.04 AT2G17230.1
EXL5
EXORDIUM like 5
Chr3_-_2825114 1.02 AT3G09200.2
AT3G09200.1
AT3G09200
Ribosomal protein L10 family protein
Chr3_+_2441565 1.00 AT3G07650.4
AT3G07650.1
AT3G07650.3
AT3G07650.2
COL9
CONSTANS-like 9
Chr5_-_8406132 1.00 AT5G24570.1
AT5G24575.1
AT5G24570
AT5G24575
hypothetical protein
hypothetical protein
Chr3_-_23046153 0.96 AT3G62270.1
AT3G62270
HCO3- transporter family
Chr4_+_16542242 0.94 AT4G34650.1
SQS2
squalene synthase 2
Chr3_-_20816035 0.92 AT3G56090.1
FER3
ferritin 3
Chr3_+_8550037 0.92 AT3G23730.1
XTH16
xyloglucan endotransglucosylase/hydrolase 16
Chr4_+_15819489 0.92 AT4G32800.1
AT4G32800
Integrase-type DNA-binding superfamily protein
Chr5_-_20489727 0.92 AT5G50335.1
AT5G50335
hypothetical protein
Chr4_+_7758275 0.86 AT4G13340.1
LRX3
Leucine-rich repeat (LRR) family protein
Chr3_-_1970946 0.85 AT3G06435.2
AT3G06435
Expressed protein
Chr5_+_23701392 0.83 AT5G58660.1
AT5G58660.2
AT5G58660
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_+_4408925 0.83 AT3G13520.1
AGP12
arabinogalactan protein 12
Chr3_+_18249663 0.82 AT3G49220.2
AT3G49220.3
AT3G49220.1
AT3G49220
Plant invertase/pectin methylesterase inhibitor superfamily
Chr2_-_5675995 0.82 AT2G13610.1
ABCG5
ABC-2 type transporter family protein
Chr3_+_20991280 0.81 AT3G56680.1
AT3G56680
Single-stranded nucleic acid binding R3H protein
Chr4_+_11663186 0.81 AT4G22010.1
sks4
SKU5 similar 4
Chr3_-_565801 0.80 AT3G02640.1
AT3G02640
transmembrane protein
Chr5_-_25813620 0.79 AT5G64570.3
AT5G64570.2
AT5G64570.1
XYL4
beta-D-xylosidase 4
Chr3_-_1970784 0.78 AT3G06435.1
AT3G06435
Expressed protein
Chr1_-_10473502 0.78 AT1G29910.1
CAB3
chlorophyll A/B binding protein 3
Chr3_-_6212551 0.78 AT3G18130.1
RACK1C_AT
receptor for activated C kinase 1C
Chr1_-_4398193 0.78 AT1G12920.1
ERF1-2
eukaryotic release factor 1-2
Chr5_-_14868758 0.78 AT5G37475.2
AT5G37475.1
AT5G37475.3
AT5G37475
Translation initiation factor eIF3 subunit
Chr4_+_16543154 0.78 AT4G34650.2
SQS2
squalene synthase 2
Chr2_-_8088302 0.78 AT2G18650.1
MEE16
RING/U-box superfamily protein
Chr1_+_20963686 0.76 AT1G56050.1
AT1G56050
GTP-binding protein-like protein
Chr1_-_2392500 0.76 AT1G07720.1
AT1G07720.2
KCS3
3-ketoacyl-CoA synthase 3
Chr4_-_347191 0.76 AT4G00810.1
AT4G00810.2
AT4G00810
60S acidic ribosomal protein family
Chr4_+_9257869 0.75 AT4G16390.1
SVR7
pentatricopeptide (PPR) repeat-containing protein
Chr2_+_10759724 0.74 AT2G25270.1
AT2G25270
transmembrane protein
Chr5_+_18945543 0.72 AT5G46690.2
AT5G46690.1
bHLH071
beta HLH protein 71
Chr5_+_3111945 0.72 AT5G09970.1
CYP78A7
cytochrome P450, family 78, subfamily A, polypeptide 7
Chr1_+_18416474 0.71 AT1G49760.2
AT1G49760.1
PAB8
poly(A) binding protein 8
Chr1_-_37757 0.71 AT1G01060.3
AT1G01060.2
AT1G01060.4
AT1G01060.1
AT1G01060.6
AT1G01060.7
AT1G01060.5
LHY
Homeodomain-like superfamily protein
Chr1_+_28756521 0.71 AT1G76620.1
AT1G76620.2
AT1G76620
Serine/Threonine-kinase, putative (Protein of unknown function, DUF547)
Chr5_-_1293723 0.70 AT5G04530.1
KCS19
3-ketoacyl-CoA synthase 19
Chr1_-_11719988 0.70 AT1G32450.1
NRT1.5
nitrate transporter 1.5
Chr4_-_947075 0.70 AT4G02130.2
AT4G02130.3
GATL6
galacturonosyltransferase 6
Chr1_-_1307973 0.70 AT1G04680.1
AT1G04680
Pectin lyase-like superfamily protein
Chr5_+_26671273 0.70 AT5G66800.1
AT5G66800
membrane-associated kinase regulator-like protein
Chr3_-_19063538 0.70 AT3G51350.1
AT3G51350
Eukaryotic aspartyl protease family protein
Chr2_-_19361162 0.70 AT2G47160.2
BOR1
HCO3- transporter family
Chr2_-_19361328 0.70 AT2G47160.1
BOR1
HCO3- transporter family
Chr5_+_14273535 0.70 AT5G36230.2
AT5G36230
ARM repeat superfamily protein
Chr4_-_14886784 0.70 AT4G30450.1
AT4G30450
glycine-rich protein
Chr2_-_17827648 0.70 AT2G42840.1
PDF1
protodermal factor 1
Chr5_-_22906764 0.69 AT5G56580.1
MKK6
MAP kinase kinase 6
Chr1_+_22767617 0.69 AT1G61667.1
AT1G61667
serine protease, putative (Protein of unknown function, DUF538)
Chr2_-_784880 0.69 AT2G02780.3
AT2G02780.1
AT2G02780.2
AT2G02780
Leucine-rich repeat protein kinase family protein
Chr5_+_14273345 0.68 AT5G36230.1
AT5G36230
ARM repeat superfamily protein
Chr1_-_6940832 0.66 AT1G20010.1
TUB5
tubulin beta-5 chain
Chr5_+_23693259 0.66 AT5G58620.1
AT5G58620
zinc finger (CCCH-type) family protein
Chr2_-_14592140 0.66 AT2G34650.1
PID
Protein kinase superfamily protein
Chr4_-_7414955 0.66 AT4G12500.1
AT4G12500
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_17728479 0.66 AT2G42580.1
TTL3
tetratricopetide-repeat thioredoxin-like 3
Chr3_+_19825267 0.65 AT3G53480.1
ABCG37
pleiotropic drug resistance 9
Chr5_-_13911225 0.65 AT5G35740.1
AT5G35740
Carbohydrate-binding X8 domain superfamily protein
Chr3_+_4403355 0.65 AT3G13510.1
AT3G13510
carboxyl-terminal peptidase, putative (DUF239)
Chr5_+_15208358 0.64 AT5G38110.1
ASF1B
anti- silencing function 1b
Chr1_-_12224000 0.64 AT1G33720.5
AT1G33720.1
AT1G33720.3
AT1G33720.2
AT1G33720.4
CYP76C6
cytochrome P450, family 76, subfamily C, polypeptide 6
Chr5_+_17951442 0.64 AT5G44565.2
AT5G44565.1
AT5G44565.3
AT5G44565
transmembrane protein
Chr5_+_22492892 0.64 AT5G55530.2
AT5G55530.1
AT5G55530
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr3_+_16163709 0.63 AT3G44590.1
AT3G44590.2
AT3G44590
60S acidic ribosomal protein family
Chr5_-_6684744 0.63 AT5G19770.1
TUA3
tubulin alpha-3
Chr4_+_1249971 0.63 AT4G02800.1
AT4G02800
GRIP/coiled-coil protein
Chr2_+_9942915 0.62 AT2G23350.1
PAB4
poly(A) binding protein 4
Chr3_+_6840281 0.62 AT3G19680.1
AT3G19680
hypothetical protein (DUF1005)
Chr2_+_6761635 0.62 AT2G15490.2
AT2G15490.3
AT2G15490.1
UGT73B4
UDP-glycosyltransferase 73B4
Chr3_+_18940643 0.62 AT3G50970.1
LTI30
dehydrin family protein
Chr2_-_13012043 0.62 AT2G30540.1
AT2G30540
Thioredoxin superfamily protein
Chr1_-_6904155 0.62 AT1G19880.1
AT1G19880
Regulator of chromosome condensation (RCC1) family protein
Chr4_-_18098633 0.62 AT4G38770.1
PRP4
proline-rich protein 4
Chr5_+_5223934 0.62 AT5G16000.1
NIK1
NSP-interacting kinase 1
Chr5_+_7014662 0.62 AT5G20720.1
AT5G20720.4
AT5G20720.2
AT5G20720.3
CPN20
chaperonin 20
Chr1_+_22767464 0.62 AT1G61667.2
AT1G61667
serine protease, putative (Protein of unknown function, DUF538)
Chr3_+_247192 0.61 AT3G01670.2
AT3G01670.1
SEOa
sieve element occlusion protein
Chr3_+_22268688 0.61 AT3G60245.1
AT3G60245
Zinc-binding ribosomal protein family protein
Chr3_+_2167730 0.60 AT3G06868.1
AT3G06868
vitellogenin-like protein
Chr1_-_22417244 0.60 AT1G60890.2
AT1G60890.1
AT1G60890
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr1_-_29005281 0.60 AT1G77200.1
AT1G77200
Integrase-type DNA-binding superfamily protein
Chr5_+_18530834 0.60 AT5G45680.1
FKBP13
FK506-binding protein 13
Chr4_-_947249 0.60 AT4G02130.1
GATL6
galacturonosyltransferase 6
Chr1_+_28098464 0.59 AT1G74790.1
AT1G74790
catalytics
Chr3_+_10505711 0.59 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr5_-_22500564 0.59 AT5G55540.2
AT5G55540.1
TRN1
tornado 1
Chr5_+_22493103 0.59 AT5G55530.3
AT5G55530
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_+_625254 0.59 AT5G02760.1
AT5G02760
Protein phosphatase 2C family protein
Chr5_-_22944970 0.58 AT5G56710.2
AT5G56710.1
AT5G56710
Ribosomal protein L31e family protein
Chr3_-_11269228 0.58 AT3G29360.2
AT3G29360.1
UGD2
UDP-glucose 6-dehydrogenase family protein
Chr2_-_18428397 0.58 AT2G44680.1
AT2G44680.3
AT2G44680.2
CKB4
casein kinase II beta subunit 4
Chr2_-_12646057 0.58 AT2G29550.1
TUB7
tubulin beta-7 chain
Chr1_-_8559066 0.58 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_+_25721733 0.58 AT5G64310.1
AGP1
arabinogalactan protein 1
Chr2_-_17720366 0.58 AT2G42570.1
TBL39
TRICHOME BIREFRINGENCE-LIKE 39
Chr4_-_682601 0.57 AT4G01575.1
AT4G01575
serine protease inhibitor, Kazal-type family protein
Chr2_+_17513008 0.57 AT2G41950.1
AT2G41950
DNA-directed RNA polymerase subunit beta
Chr1_+_23527570 0.57 AT1G63440.1
HMA5
heavy metal atpase 5
Chr5_-_24559879 0.57 AT5G61020.2
AT5G61020.1
ECT3
evolutionarily conserved C-terminal region 3
Chr5_+_19736540 0.56 AT5G48660.1
AT5G48660.2
AT5G48660
B-cell receptor-associated protein 31-like protein
Chr4_-_17123855 0.56 AT4G36180.1
AT4G36180
Leucine-rich receptor-like protein kinase family protein
Chr1_-_21580766 0.56 AT1G58235.1
AT1G58235
hypothetical protein
Chr4_-_9331646 0.55 AT4G16563.1
AT4G16563
Eukaryotic aspartyl protease family protein
Chr4_-_13836661 0.55 AT4G27730.1
OPT6
oligopeptide transporter 1
Chr5_+_7912652 0.55 AT5G23460.1
AT5G23460
hypothetical protein
Chr3_-_7457393 0.55 AT3G21240.2
AT3G21240.1
AT3G21240.3
4CL2
4-coumarate:CoA ligase 2
Chr2_+_6950041 0.54 AT2G15970.2
COR413-PM1
cold regulated 413 plasma membrane 1
Chr2_+_6949851 0.54 AT2G15970.1
COR413-PM1
cold regulated 413 plasma membrane 1
Chr1_-_21581165 0.54 AT1G58235.2
AT1G58235
hypothetical protein
Chr3_+_18534450 0.54 AT3G50000.1
CKA2
casein kinase II, alpha chain 2
Chr1_+_7785708 0.54 AT1G22065.1
AT1G22065
hypothetical protein
Chr5_+_17980850 0.54 AT5G44582.1
AT5G44582
hypothetical protein
Chr4_-_10309591 0.54 AT4G18760.1
RLP51
receptor like protein 51
Chr3_-_8456708 0.54 AT3G23560.1
AT3G23560.2
ALF5
MATE efflux family protein
Chr4_-_14257965 0.54 AT4G28890.1
AT4G28890
RING/U-box superfamily protein
Chr4_-_15394626 0.54 AT4G31820.1
AT4G31820.2
ENP
Phototropic-responsive NPH3 family protein
Chr3_-_545602 0.54 AT3G02570.1
MEE31
Mannose-6-phosphate isomerase, type I
Chr3_+_5116021 0.53 AT3G15190.1
PRPS20
chloroplast 30S ribosomal protein S20
Chr3_-_14196865 0.53 AT3G41762.1
AT3G41762
hypothetical protein
Chr1_+_5668384 0.53 AT1G16560.2
AT1G16560.6
AT1G16560.5
AT1G16560.7
AT1G16560.8
AT1G16560.3
AT1G16560.9
AT1G16560.1
AT1G16560.4
AT1G16560
Per1-like family protein
Chr3_-_10030087 0.53 AT3G27180.1
AT3G27180
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_-_9839824 0.53 AT2G23100.1
AT2G23100
Cysteine/Histidine-rich C1 domain family protein
Chr3_+_22630331 0.53 AT3G61150.1
HDG1
homeodomain GLABROUS 1
Chr1_-_26917727 0.53 AT1G71410.1
AT1G71410.2
AT1G71410
ARM repeat superfamily protein
Chr5_+_22388782 0.53 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr4_-_14439723 0.53 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr3_+_8519136 0.53 AT3G23670.1
AT3G23670.2
KINESIN-12B
phragmoplast-associated kinesin-related protein
Chr1_+_5705897 0.53 AT1G16690.1
AT1G16690
Enhancer of polycomb-like transcription factor protein
Chr4_-_8794433 0.52 AT4G15390.1
AT4G15390.2
AT4G15390
HXXXD-type acyl-transferase family protein
Chr1_-_28598420 0.52 AT1G76220.1
AT1G76220
hypothetical protein (DUF241)
Chr1_+_20614573 0.52 AT1G55260.1
AT1G55260.2
AT1G55260
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_18374162 0.52 AT2G44500.1
AT2G44500.2
AT2G44500
O-fucosyltransferase family protein
Chr4_+_131422 0.52 AT4G00305.1
AT4G00305
RING/U-box superfamily protein
Chr1_+_20052393 0.52 AT1G53708.1
RTFL9
ROTUNDIFOLIA like 9
Chr4_-_14958080 0.52 AT4G30670.1
AT4G30670
Putative membrane lipoprotein
Chr5_+_883311 0.52 AT5G03520.1
RAB8C
RAB GTPase homolog 8C
Chr1_+_26329863 0.52 AT1G69910.1
AT1G69910
Protein kinase superfamily protein
Chr4_-_9250343 0.52 AT4G16370.1
OPT3
oligopeptide transporter
Chr5_+_883463 0.52 AT5G03520.2
RAB8C
RAB GTPase homolog 8C
Chr5_-_24984044 0.52 AT5G62190.1
PRH75
DEAD box RNA helicase (PRH75)
Chr4_+_15599475 0.52 AT4G32300.1
SD2-5
S-domain-2 5
Chr5_+_26172009 0.52 AT5G65470.1
AT5G65470
O-fucosyltransferase family protein
Chr1_-_5758583 0.52 AT1G16820.4
AT1G16820.1
AT1G16820
vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein
Chr5_+_13761823 0.51 AT5G35580.2
AT5G35580.1
AT5G35580
Protein kinase superfamily protein
Chr5_+_4768263 0.51 AT5G14760.1
AO
L-aspartate oxidase
Chr3_-_4123582 0.51 AT3G12920.1
BRG3
SBP (S-ribonuclease binding protein) family protein
Chr4_+_18209399 0.51 AT4G39080.1
VHA-A3
vacuolar proton ATPase A3
Chr3_+_5585872 0.51 AT3G16440.2
AT3G16440.1
MLP-300B
myrosinase-binding protein-like protein-300B
Chr3_+_6154363 0.51 AT3G18000.1
XPL1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_14579563 0.51 AT4G29780.1
AT4G29780
nuclease
Chr2_+_8431363 0.51 AT2G19460.2
AT2G19460.1
AT2G19460
DUF3511 domain protein (DUF3511)
Chr5_+_17585523 0.50 AT5G43760.1
KCS20
3-ketoacyl-CoA synthase 20
Chr1_+_7696427 0.50 AT1G21910.1
DREB26
Integrase-type DNA-binding superfamily protein
Chr1_-_7958464 0.50 AT1G22530.2
AT1G22530.1
PATL2
PATELLIN 2
Chr1_+_22139170 0.50 AT1G60060.1
AT1G60060
Serine/threonine-protein kinase WNK (With No Lysine)-like protein
Chr5_-_22658084 0.50 AT5G55940.1
emb2731
Uncharacterized protein family (UPF0172)
Chr5_-_25398282 0.50 AT5G63410.1
AT5G63410
Leucine-rich repeat protein kinase family protein
Chr3_-_1526166 0.50 AT3G05340.1
AT3G05340
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_5648636 0.49 AT1G16520.1
AT1G16520
interactor of constitutive active ROPs protein
Chr5_+_22388521 0.49 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr5_+_3157694 0.49 AT5G10100.1
AT5G10100.3
AT5G10100.4
TPPI
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_-_14623093 0.49 AT5G37010.1
AT5G37010
rho GTPase-activating protein
Chr2_-_14390317 0.49 AT2G34070.1
AT2G34070.2
TBL37
TRICHOME BIREFRINGENCE-LIKE 37
Chr5_-_16353898 0.49 AT5G40820.3
AT5G40820.2
AT5G40820.1
AT5G40820.4
ATR
Ataxia telangiectasia-mutated and RAD3-like protein
Chr2_+_6640154 0.49 AT2G15280.2
AT2G15280
Reticulon family protein
Chr2_+_6639973 0.49 AT2G15280.1
AT2G15280
Reticulon family protein
Chr4_+_16881336 0.49 AT4G35560.1
AT4G35560.2
DAW1
Transducin/WD40 repeat-like superfamily protein
Chr1_+_218834 0.49 AT1G01600.1
CYP86A4
cytochrome P450, family 86, subfamily A, polypeptide 4
Chr5_-_18566470 0.49 AT5G45775.1
AT5G45775.2
AT5G45775
Ribosomal L5P family protein
Chr1_+_10371675 0.49 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_-_556623 0.49 AT5G02500.1
HSC70-1
heat shock cognate protein 70-1
Chr5_-_556442 0.48 AT5G02500.2
HSC70-1
heat shock cognate protein 70-1
Chr1_-_27648604 0.48 AT1G73550.2
AT1G73550.1
AT1G73550
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_12851983 0.48 AT1G35140.1
PHI-1
Phosphate-responsive 1 family protein
Chr5_-_16610692 0.48 AT5G41520.1
AT5G41520.2
RPS10B
RNA binding Plectin/S10 domain-containing protein
Chr1_+_3888610 0.48 AT1G11580.2
AT1G11580.1
PMEPCRA
methylesterase PCR A
Chr1_+_4342209 0.48 AT1G12740.1
AT1G12740.2
AT1G12740.3
AT1G12740.4
CYP87A2
cytochrome P450, family 87, subfamily A, polypeptide 2
Chr1_+_22444307 0.48 AT1G60950.1
FED A
2Fe-2S ferredoxin-like superfamily protein
Chr3_-_7002435 0.48 AT3G20050.1
TCP-1
T-complex protein 1 alpha subunit
Chr2_+_13712928 0.48 AT2G32280.1
AT2G32280.2
AT2G32280
GPI inositol-deacylase C, putative (DUF1218)
Chr1_-_1659437 0.48 AT1G05570.2
CALS1
callose synthase 1
Chr5_-_4582856 0.48 AT5G14210.1
AT5G14210.2
AT5G14210.3
AT5G14210
Leucine-rich repeat protein kinase family protein
Chr1_-_1659079 0.48 AT1G05570.3
CALS1
callose synthase 1
Chr5_-_22080341 0.48 AT5G54380.1
THE1
protein kinase family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G40620

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 0.4 GO:0090435 protein localization to nuclear envelope(GO:0090435)
0.4 1.1 GO:0070922 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.3 1.4 GO:0046713 borate transport(GO:0046713)
0.3 1.0 GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity(GO:0043433)
0.2 0.7 GO:0010254 nectary development(GO:0010254) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.2 0.7 GO:0055047 generative cell mitosis(GO:0055047)
0.2 1.3 GO:0072344 rescue of stalled ribosome(GO:0072344)
0.2 0.2 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.2 0.6 GO:0071258 cellular response to gravity(GO:0071258)
0.2 0.6 GO:0051291 protein heterooligomerization(GO:0051291) regulation of oxidoreductase activity(GO:0051341) regulation of response to reactive oxygen species(GO:1901031)
0.2 1.2 GO:0007112 male meiosis cytokinesis(GO:0007112)
0.2 0.6 GO:1904580 regulation of intracellular mRNA localization(GO:1904580)
0.2 0.8 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.2 0.9 GO:0070863 regulation of protein exit from endoplasmic reticulum(GO:0070861) positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.2 0.7 GO:0071415 cellular response to alkaloid(GO:0071312) cellular response to caffeine(GO:0071313) cellular response to purine-containing compound(GO:0071415) negative regulation of cellular response to caffeine(GO:1901181)
0.2 0.5 GO:0000032 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.2 0.5 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.2 2.9 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.2 0.5 GO:0019695 choline metabolic process(GO:0019695)
0.2 0.5 GO:0000349 generation of catalytic spliceosome for first transesterification step(GO:0000349)
0.2 0.5 GO:0033321 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.2 2.3 GO:1903530 regulation of secretion(GO:0051046) regulation of secretion by cell(GO:1903530)
0.2 0.6 GO:0080140 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.2 0.3 GO:0045332 phospholipid translocation(GO:0045332)
0.2 0.5 GO:0034058 endosomal vesicle fusion(GO:0034058)
0.2 0.5 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.2 0.6 GO:0019567 pentose biosynthetic process(GO:0019322) arabinose biosynthetic process(GO:0019567)
0.2 0.5 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
0.2 1.5 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.1 0.4 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.1 0.6 GO:0006023 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.1 0.4 GO:0048729 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.1 0.4 GO:0008334 histone mRNA metabolic process(GO:0008334)
0.1 0.4 GO:1990532 stress response to nickel ion(GO:1990532)
0.1 0.4 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.1 0.4 GO:0071763 nuclear membrane organization(GO:0071763)
0.1 0.7 GO:0071366 cellular response to indolebutyric acid stimulus(GO:0071366)
0.1 0.4 GO:0010541 acropetal auxin transport(GO:0010541)
0.1 0.6 GO:0010271 regulation of chlorophyll catabolic process(GO:0010271) regulation of tetrapyrrole catabolic process(GO:1901404)
0.1 0.6 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.1 0.4 GO:0045002 DNA double-strand break processing involved in repair via single-strand annealing(GO:0010792) double-strand break repair via single-strand annealing(GO:0045002)
0.1 1.0 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.1 0.5 GO:0009660 amyloplast organization(GO:0009660)
0.1 0.3 GO:0043181 vacuolar sequestering(GO:0043181)
0.1 0.5 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 0.5 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 0.6 GO:0006106 fumarate metabolic process(GO:0006106)
0.1 0.5 GO:0010080 regulation of floral meristem growth(GO:0010080) inflorescence meristem growth(GO:0010450)
0.1 0.6 GO:0006336 DNA replication-independent nucleosome assembly(GO:0006336)
0.1 0.4 GO:2000036 regulation of stem cell population maintenance(GO:2000036) regulation of stem cell differentiation(GO:2000736)
0.1 0.4 GO:0050792 regulation of viral process(GO:0050792)
0.1 0.4 GO:0010480 microsporocyte differentiation(GO:0010480)
0.1 0.5 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.1 1.0 GO:0006450 regulation of translational fidelity(GO:0006450)
0.1 0.3 GO:0051703 pollen tube reception(GO:0010483) intraspecies interaction between organisms(GO:0051703)
0.1 0.3 GO:0032000 positive regulation of fatty acid beta-oxidation(GO:0032000) positive regulation of lipid catabolic process(GO:0050996)
0.1 0.1 GO:1902407 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.1 0.2 GO:0080171 lytic vacuole organization(GO:0080171)
0.1 0.4 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.4 GO:0070509 calcium ion import(GO:0070509)
0.1 0.3 GO:0010045 response to nickel cation(GO:0010045)
0.1 0.6 GO:1990169 detoxification of copper ion(GO:0010273) stress response to copper ion(GO:1990169)
0.1 0.5 GO:0060919 auxin influx(GO:0060919)
0.1 0.9 GO:0006880 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.1 0.5 GO:0048455 stamen formation(GO:0048455)
0.1 0.4 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.1 0.3 GO:0032196 transposition(GO:0032196)
0.1 0.3 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 0.2 GO:0080119 ER body organization(GO:0080119)
0.1 1.3 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.1 0.6 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.1 0.5 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.1 0.7 GO:0046473 phosphatidic acid metabolic process(GO:0046473)
0.1 0.5 GO:0048530 fruit morphogenesis(GO:0048530)
0.1 0.3 GO:0071260 cellular response to mechanical stimulus(GO:0071260)
0.1 0.7 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.1 0.3 GO:0009945 radial axis specification(GO:0009945)
0.1 0.8 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.1 0.5 GO:0006723 cuticle hydrocarbon biosynthetic process(GO:0006723)
0.1 0.3 GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine(GO:0019279) 'de novo' L-methionine biosynthetic process(GO:0071266)
0.1 0.5 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
0.1 0.4 GO:0007035 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.1 1.2 GO:0009645 response to low light intensity stimulus(GO:0009645)
0.1 0.2 GO:0048478 replication fork protection(GO:0048478)
0.1 0.2 GO:0090392 regulation of multicellular organism growth(GO:0040014) sepal giant cell differentiation(GO:0090392) regulation of adaxial/abaxial pattern formation(GO:2000011)
0.1 0.2 GO:0009233 menaquinone metabolic process(GO:0009233) menaquinone biosynthetic process(GO:0009234)
0.1 0.3 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 0.7 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.1 0.4 GO:0032012 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.1 0.2 GO:1902066 regulation of cell wall pectin metabolic process(GO:1902066)
0.1 3.2 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 2.3 GO:0070417 cellular response to cold(GO:0070417)
0.1 0.2 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.1 0.4 GO:0006471 protein ADP-ribosylation(GO:0006471) protein poly-ADP-ribosylation(GO:0070212)
0.1 0.4 GO:0090342 regulation of cell aging(GO:0090342)
0.1 0.3 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.1 0.4 GO:0060148 positive regulation of posttranscriptional gene silencing(GO:0060148)
0.1 0.4 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 0.3 GO:0010067 procambium histogenesis(GO:0010067)
0.1 0.2 GO:0042351 'de novo' GDP-L-fucose biosynthetic process(GO:0042351)
0.1 0.2 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 0.6 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.1 0.1 GO:0016093 polyprenol metabolic process(GO:0016093)
0.1 0.7 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 0.2 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.1 0.3 GO:0032465 regulation of cytokinesis(GO:0032465)
0.1 0.5 GO:0031572 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572)
0.1 1.2 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.1 1.3 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.1 0.3 GO:0033512 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
0.1 0.3 GO:0052541 plant-type cell wall cellulose metabolic process(GO:0052541)
0.1 0.3 GO:0000480 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000472) endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000480)
0.1 0.3 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.1 0.3 GO:0071323 cellular response to chitin(GO:0071323)
0.1 0.1 GO:0046398 UDP-glucuronate metabolic process(GO:0046398)
0.1 0.6 GO:0010088 phloem development(GO:0010088)
0.1 0.5 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.1 0.5 GO:0009643 photosynthetic acclimation(GO:0009643)
0.1 0.3 GO:0080009 mRNA methylation(GO:0080009)
0.1 0.2 GO:0071163 regulation of DNA-dependent DNA replication initiation(GO:0030174) DNA replication preinitiation complex assembly(GO:0071163)
0.1 1.3 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.1 0.2 GO:0000492 box C/D snoRNP assembly(GO:0000492) regulation of defense response to fungus, incompatible interaction(GO:2000072)
0.1 0.6 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.1 0.1 GO:0043954 cellular component maintenance(GO:0043954) chromatin maintenance(GO:0070827)
0.1 0.3 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 0.3 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 0.6 GO:0016925 protein sumoylation(GO:0016925)
0.1 0.8 GO:0048766 root hair initiation(GO:0048766)
0.1 1.2 GO:0048768 root hair cell tip growth(GO:0048768)
0.1 0.5 GO:1901970 positive regulation of mitotic nuclear division(GO:0045840) positive regulation of mitotic metaphase/anaphase transition(GO:0045842) positive regulation of mitotic sister chromatid separation(GO:1901970) positive regulation of metaphase/anaphase transition of cell cycle(GO:1902101)
0.1 0.5 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.1 0.5 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.1 0.3 GO:0070072 proton-transporting V-type ATPase complex assembly(GO:0070070) vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072)
0.1 0.2 GO:0018027 peptidyl-lysine dimethylation(GO:0018027)
0.1 0.3 GO:0051647 nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023) nucleus localization(GO:0051647)
0.1 0.4 GO:0045899 regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045898) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045899)
0.1 0.4 GO:0000055 ribosomal large subunit export from nucleus(GO:0000055)
0.1 0.6 GO:0010540 basipetal auxin transport(GO:0010540)
0.1 0.2 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.1 2.9 GO:0002181 cytoplasmic translation(GO:0002181)
0.1 0.3 GO:0000212 meiotic spindle organization(GO:0000212)
0.0 0.1 GO:0071461 cellular response to redox state(GO:0071461)
0.0 0.4 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.0 0.0 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.0 0.4 GO:0051785 positive regulation of nuclear division(GO:0051785)
0.0 0.6 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.0 0.1 GO:1990882 rRNA acetylation involved in maturation of SSU-rRNA(GO:1904812) rRNA acetylation(GO:1990882) RNA acetylation(GO:1990884)
0.0 0.6 GO:0060321 acceptance of pollen(GO:0060321)
0.0 0.5 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.5 GO:0010233 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.0 0.4 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.0 0.2 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.0 1.5 GO:0043449 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.0 0.3 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.0 0.2 GO:0051455 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.0 0.3 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.1 GO:0034969 histone arginine methylation(GO:0034969)
0.0 0.5 GO:0018342 protein prenylation(GO:0018342) prenylation(GO:0097354)
0.0 0.6 GO:0006265 DNA topological change(GO:0006265)
0.0 0.4 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 1.2 GO:0006661 phosphatidylinositol biosynthetic process(GO:0006661)
0.0 0.4 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.5 GO:0080144 amino acid homeostasis(GO:0080144)
0.0 0.2 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.0 0.1 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.0 1.0 GO:0031647 regulation of protein stability(GO:0031647)
0.0 0.4 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.3 GO:0010821 regulation of mitochondrion organization(GO:0010821)
0.0 0.3 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.2 GO:0000084 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.0 0.2 GO:0006517 protein deglycosylation(GO:0006517)
0.0 0.9 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.0 0.2 GO:0043100 pyrimidine nucleobase salvage(GO:0043100)
0.0 0.1 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.0 0.2 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 1.0 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.2 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.1 GO:0006620 posttranslational protein targeting to membrane(GO:0006620)
0.0 0.2 GO:0080151 positive regulation of salicylic acid mediated signaling pathway(GO:0080151)
0.0 0.7 GO:0045927 positive regulation of growth(GO:0045927)
0.0 0.5 GO:0045492 xylan biosynthetic process(GO:0045492) cell wall polysaccharide biosynthetic process(GO:0070592)
0.0 0.6 GO:0046688 response to copper ion(GO:0046688)
0.0 0.1 GO:0042256 mature ribosome assembly(GO:0042256)
0.0 0.3 GO:0046512 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.0 0.4 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.0 0.6 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 0.5 GO:0006547 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.0 0.1 GO:0046786 viral replication complex formation and maintenance(GO:0046786)
0.0 0.6 GO:0009638 phototropism(GO:0009638)
0.0 0.1 GO:0015739 sialic acid transport(GO:0015739)
0.0 0.2 GO:0019264 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.0 0.3 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.0 0.4 GO:0006353 DNA-templated transcription, termination(GO:0006353)
0.0 0.3 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.3 GO:0017182 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.3 GO:0007021 tubulin complex assembly(GO:0007021)
0.0 0.2 GO:0045793 positive regulation of cell size(GO:0045793)
0.0 0.3 GO:0010222 stem vascular tissue pattern formation(GO:0010222)
0.0 0.1 GO:0090603 sieve element differentiation(GO:0090603)
0.0 0.6 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 0.7 GO:0070816 phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)
0.0 0.1 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.0 0.4 GO:0036297 interstrand cross-link repair(GO:0036297)
0.0 0.3 GO:0030071 regulation of mitotic metaphase/anaphase transition(GO:0030071) regulation of metaphase/anaphase transition of cell cycle(GO:1902099)
0.0 0.7 GO:0015936 coenzyme A metabolic process(GO:0015936)
0.0 0.2 GO:0031119 tRNA pseudouridine synthesis(GO:0031119)
0.0 1.8 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.1 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.0 0.2 GO:0010117 photoprotection(GO:0010117)
0.0 0.7 GO:0045727 positive regulation of cellular amide metabolic process(GO:0034250) positive regulation of translation(GO:0045727)
0.0 0.2 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.1 GO:0046209 nitric oxide metabolic process(GO:0046209)
0.0 0.9 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.8 GO:0006414 translational elongation(GO:0006414)
0.0 0.1 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.0 0.4 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.2 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.0 0.1 GO:0031116 microtubule bundle formation(GO:0001578) positive regulation of microtubule polymerization or depolymerization(GO:0031112) regulation of microtubule polymerization(GO:0031113) positive regulation of microtubule polymerization(GO:0031116)
0.0 0.2 GO:0097034 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.0 0.4 GO:0051026 chiasma assembly(GO:0051026)
0.0 0.4 GO:1902074 response to salt(GO:1902074)
0.0 0.5 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.1 GO:0016046 detection of fungus(GO:0016046)
0.0 0.2 GO:0010315 auxin efflux(GO:0010315)
0.0 0.5 GO:0031167 rRNA methylation(GO:0031167)
0.0 0.1 GO:0044208 'de novo' AMP biosynthetic process(GO:0044208)
0.0 0.1 GO:0010337 regulation of salicylic acid metabolic process(GO:0010337)
0.0 0.9 GO:0010043 response to zinc ion(GO:0010043)
0.0 0.3 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.0 2.3 GO:0009741 response to brassinosteroid(GO:0009741)
0.0 0.4 GO:0045040 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.0 0.1 GO:0015785 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.0 0.6 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 0.8 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.0 0.0 GO:0090207 regulation of triglyceride metabolic process(GO:0090207)
0.0 0.0 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.0 0.3 GO:0090333 regulation of stomatal closure(GO:0090333)
0.0 0.1 GO:0019627 urea metabolic process(GO:0019627)
0.0 0.2 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.0 1.5 GO:0009627 systemic acquired resistance(GO:0009627)
0.0 0.1 GO:0009113 purine nucleobase biosynthetic process(GO:0009113)
0.0 0.4 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.1 GO:0016540 protein autoprocessing(GO:0016540)
0.0 0.2 GO:0010044 response to aluminum ion(GO:0010044)
0.0 0.2 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.3 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.3 GO:0033674 positive regulation of kinase activity(GO:0033674)
0.0 0.3 GO:0048017 phosphatidylinositol-mediated signaling(GO:0048015) inositol lipid-mediated signaling(GO:0048017)
0.0 0.1 GO:0043970 histone H3-K9 acetylation(GO:0043970)
0.0 0.3 GO:0007009 plasma membrane organization(GO:0007009)
0.0 0.2 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.0 0.2 GO:0043966 histone H3 acetylation(GO:0043966)
0.0 0.3 GO:0016104 triterpenoid biosynthetic process(GO:0016104)
0.0 3.4 GO:0046777 protein autophosphorylation(GO:0046777)
0.0 0.9 GO:0006897 endocytosis(GO:0006897)
0.0 0.1 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.0 0.1 GO:0070536 protein K63-linked deubiquitination(GO:0070536)
0.0 0.1 GO:0044773 mitotic DNA damage checkpoint(GO:0044773)
0.0 0.1 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.0 0.2 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.0 0.1 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.4 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 0.8 GO:0048825 cotyledon development(GO:0048825)
0.0 0.5 GO:0042335 cuticle development(GO:0042335)
0.0 0.1 GO:1901269 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.0 0.1 GO:0042144 regulation of vacuole fusion, non-autophagic(GO:0032889) vacuole fusion, non-autophagic(GO:0042144)
0.0 0.5 GO:0002237 response to molecule of bacterial origin(GO:0002237)
0.0 0.1 GO:0015693 magnesium ion transport(GO:0015693)
0.0 0.1 GO:0071491 red light signaling pathway(GO:0010161) cellular response to red light(GO:0071491)
0.0 0.3 GO:0052543 callose deposition in cell wall(GO:0052543)
0.0 0.2 GO:0043248 proteasome assembly(GO:0043248)
0.0 1.8 GO:0009101 protein glycosylation(GO:0006486) glycoprotein biosynthetic process(GO:0009101) macromolecule glycosylation(GO:0043413)
0.0 0.2 GO:0009641 shade avoidance(GO:0009641)
0.0 0.2 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.6 GO:0070585 protein targeting to mitochondrion(GO:0006626) protein localization to mitochondrion(GO:0070585) establishment of protein localization to mitochondrion(GO:0072655)
0.0 0.4 GO:0042752 regulation of circadian rhythm(GO:0042752)
0.0 0.2 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.2 GO:0032544 plastid translation(GO:0032544)
0.0 0.1 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.0 0.3 GO:0000387 spliceosomal snRNP assembly(GO:0000387)
0.0 0.1 GO:0006346 methylation-dependent chromatin silencing(GO:0006346)
0.0 0.6 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.0 GO:0010235 guard mother cell cytokinesis(GO:0010235)
0.0 0.3 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.3 GO:0006754 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.0 0.0 GO:0009726 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.1 GO:0006103 2-oxoglutarate metabolic process(GO:0006103)
0.0 0.3 GO:0007030 Golgi organization(GO:0007030)
0.0 0.4 GO:0006888 ER to Golgi vesicle-mediated transport(GO:0006888)
0.0 0.2 GO:0018345 protein palmitoylation(GO:0018345)
0.0 0.2 GO:0042493 response to drug(GO:0042493)
0.0 0.1 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.0 0.4 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.1 GO:0080113 regulation of seed growth(GO:0080113)
0.0 0.4 GO:0010075 regulation of meristem growth(GO:0010075)
0.0 0.2 GO:0046501 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.0 0.1 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.0 0.2 GO:0010093 specification of floral organ identity(GO:0010093)
0.0 0.3 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 0.2 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.0 GO:0070601 centromeric sister chromatid cohesion(GO:0070601)
0.0 0.4 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 0.1 GO:0007584 response to nutrient(GO:0007584)
0.0 0.3 GO:0006744 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.0 0.4 GO:0071805 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.0 0.0 GO:0031087 nuclear-transcribed mRNA catabolic process, deadenylation-independent decay(GO:0031086) deadenylation-independent decapping of nuclear-transcribed mRNA(GO:0031087)
0.0 0.8 GO:0048511 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.0 0.1 GO:0006535 cysteine biosynthetic process from serine(GO:0006535)
0.0 0.3 GO:0009664 plant-type cell wall organization(GO:0009664)
0.0 0.0 GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000479)
0.0 0.1 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.1 GO:0044070 regulation of anion transport(GO:0044070)
0.0 0.1 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.3 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.0 0.4 GO:0006458 'de novo' protein folding(GO:0006458)
0.0 0.1 GO:0042793 transcription from plastid promoter(GO:0042793)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0043673 lateral plasma membrane(GO:0016328) pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.2 0.6 GO:0042709 succinate-CoA ligase complex(GO:0042709)
0.2 0.8 GO:0018444 translation release factor complex(GO:0018444)
0.2 3.6 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.2 1.5 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.2 0.5 GO:1990112 RQC complex(GO:1990112)
0.2 1.6 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.2 0.6 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.2 0.8 GO:0034425 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.2 0.3 GO:0044462 cell wall part(GO:0044426) external encapsulating structure part(GO:0044462)
0.1 0.6 GO:0044420 extracellular matrix component(GO:0044420)
0.1 1.9 GO:0045298 tubulin complex(GO:0045298)
0.1 1.4 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.1 0.5 GO:0030870 Mre11 complex(GO:0030870)
0.1 0.7 GO:0090395 plant cell papilla(GO:0090395)
0.1 0.3 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.1 0.3 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.1 0.3 GO:0032133 chromosome passenger complex(GO:0032133)
0.1 0.2 GO:0016323 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.1 0.4 GO:0034515 proteasome storage granule(GO:0034515)
0.1 0.4 GO:0000938 GARP complex(GO:0000938)
0.1 1.2 GO:0030125 clathrin vesicle coat(GO:0030125)
0.1 0.4 GO:0031597 cytosolic proteasome complex(GO:0031597)
0.1 0.5 GO:0030897 HOPS complex(GO:0030897)
0.1 0.3 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.1 0.3 GO:0030663 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.1 0.6 GO:0030118 clathrin coat(GO:0030118)
0.1 0.2 GO:0005712 chiasma(GO:0005712)
0.1 0.7 GO:0043189 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.1 0.6 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.1 0.6 GO:0072546 ER membrane protein complex(GO:0072546)
0.1 0.7 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.1 0.4 GO:0016471 vacuolar proton-transporting V-type ATPase complex(GO:0016471)
0.1 0.4 GO:0031372 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.1 1.4 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 0.3 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.1 0.5 GO:0000813 ESCRT I complex(GO:0000813)
0.1 0.1 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 0.3 GO:0048475 membrane coat(GO:0030117) coated membrane(GO:0048475)
0.0 0.2 GO:0030119 AP-type membrane coat adaptor complex(GO:0030119)
0.0 0.3 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.0 0.2 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 0.4 GO:0071256 translocon complex(GO:0071256)
0.0 0.4 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.0 0.7 GO:0031902 late endosome membrane(GO:0031902)
0.0 0.4 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.3 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.5 GO:0000974 Prp19 complex(GO:0000974)
0.0 0.3 GO:0000778 condensed nuclear chromosome kinetochore(GO:0000778)
0.0 0.2 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 0.3 GO:0031298 replication fork protection complex(GO:0031298)
0.0 0.2 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 1.5 GO:0005643 nuclear pore(GO:0005643)
0.0 0.3 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.0 7.6 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.3 GO:0089701 U2AF(GO:0089701)
0.0 0.1 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.0 0.1 GO:0032301 MutSalpha complex(GO:0032301)
0.0 0.2 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.0 0.2 GO:0070652 HAUS complex(GO:0070652)
0.0 0.8 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.8 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 4.0 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.2 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.0 0.2 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.0 0.2 GO:0000408 EKC/KEOPS complex(GO:0000408)
0.0 0.2 GO:0032153 cell division site(GO:0032153)
0.0 1.1 GO:0000145 exocyst(GO:0000145)
0.0 0.2 GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.0 0.5 GO:0005769 early endosome(GO:0005769)
0.0 0.2 GO:0055037 recycling endosome(GO:0055037)
0.0 0.1 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.0 0.5 GO:0005685 U1 snRNP(GO:0005685)
0.0 0.4 GO:0033176 proton-transporting V-type ATPase complex(GO:0033176)
0.0 0.7 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 2.2 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.9 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.0 0.1 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 6.5 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.4 GO:0030686 90S preribosome(GO:0030686)
0.0 0.1 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.0 0.7 GO:0055028 cortical microtubule(GO:0055028)
0.0 2.7 GO:0015935 small ribosomal subunit(GO:0015935)
0.0 0.1 GO:0005942 phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.0 0.2 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.0 0.8 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.2 GO:0031358 intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359)
0.0 0.2 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.2 GO:0031234 extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)
0.0 0.2 GO:0005844 polysome(GO:0005844)
0.0 0.8 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.5 GO:0005871 kinesin complex(GO:0005871)
0.0 0.4 GO:0030134 ER to Golgi transport vesicle(GO:0030134)
0.0 0.2 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.5 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 1.0 GO:0031227 intrinsic component of endoplasmic reticulum membrane(GO:0031227)
0.0 0.1 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0 0.1 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.4 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.7 GO:0016592 mediator complex(GO:0016592)
0.0 0.2 GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)(GO:0045261)
0.0 0.1 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.0 0.1 GO:0070552 BRISC complex(GO:0070552)
0.0 0.1 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 0.3 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.1 GO:0031209 SCAR complex(GO:0031209)
0.0 0.5 GO:0005770 late endosome(GO:0005770)
0.0 0.1 GO:0030076 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.0 1.3 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 2.1 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 0.1 GO:0031379 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 0.3 GO:0071013 catalytic step 2 spliceosome(GO:0071013)
0.0 7.7 GO:0005911 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0 0.7 GO:0042995 cell projection(GO:0042995)
0.0 0.1 GO:0009986 cell surface(GO:0009986)
0.0 0.0 GO:0008622 epsilon DNA polymerase complex(GO:0008622)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.7 GO:0004310 farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996)
0.3 1.4 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.3 0.8 GO:0035591 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.2 0.6 GO:0004774 succinate-CoA ligase activity(GO:0004774) succinate-CoA ligase (ADP-forming) activity(GO:0004775) succinate-CoA ligase (GDP-forming) activity(GO:0004776)
0.2 3.6 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.2 0.9 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.2 0.5 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.2 0.9 GO:0004322 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.2 0.5 GO:0000234 phosphoethanolamine N-methyltransferase activity(GO:0000234)
0.2 0.8 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.2 0.5 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.2 0.5 GO:0019003 GDP binding(GO:0019003)
0.1 0.4 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.1 0.4 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 0.4 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
0.1 0.7 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.1 0.7 GO:0051019 mitogen-activated protein kinase binding(GO:0051019)
0.1 0.7 GO:0004594 pantothenate kinase activity(GO:0004594)
0.1 0.5 GO:0004400 histidinol-phosphate transaminase activity(GO:0004400)
0.1 1.6 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.1 0.4 GO:0000403 Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)
0.1 1.6 GO:0002020 protease binding(GO:0002020)
0.1 1.4 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.1 0.6 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.1 0.7 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.1 0.4 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 0.6 GO:0004333 fumarate hydratase activity(GO:0004333)
0.1 1.0 GO:0009922 fatty acid elongase activity(GO:0009922)
0.1 2.8 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.4 GO:0045181 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.1 3.2 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 0.6 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.1 1.1 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.7 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 1.6 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 0.3 GO:0035174 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.1 0.3 GO:0047804 cysteine-S-conjugate beta-lyase activity(GO:0047804)
0.1 0.8 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.1 0.5 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.1 0.4 GO:0038199 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.1 0.5 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 2.6 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.1 0.4 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 0.3 GO:0070034 telomerase RNA binding(GO:0070034)
0.1 0.4 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.1 0.3 GO:0052924 trans-octaprenyltranstransferase activity(GO:0050347) all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity(GO:0052924)
0.1 0.9 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 0.8 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 0.2 GO:0098748 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.1 0.8 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.1 1.1 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.1 0.4 GO:0017050 D-erythro-sphingosine kinase activity(GO:0017050)
0.1 0.7 GO:0034979 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.1 0.3 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.1 0.3 GO:0016433 rRNA (adenine) methyltransferase activity(GO:0016433)
0.1 0.3 GO:0035197 siRNA binding(GO:0035197)
0.1 0.3 GO:0016748 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
0.1 0.4 GO:0009884 cytokinin receptor activity(GO:0009884)
0.1 1.0 GO:0051879 Hsp90 protein binding(GO:0051879)
0.1 0.5 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.1 1.6 GO:0016168 chlorophyll binding(GO:0016168)
0.1 0.3 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.1 0.3 GO:0003785 actin monomer binding(GO:0003785)
0.1 0.2 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.1 1.1 GO:0008536 Ran GTPase binding(GO:0008536)
0.1 0.5 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.1 0.2 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.1 0.2 GO:0004647 phosphoserine phosphatase activity(GO:0004647)
0.1 0.6 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.1 0.8 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1 0.4 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 0.5 GO:0008318 protein prenyltransferase activity(GO:0008318)
0.1 0.5 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.1 0.3 GO:0034511 U3 snoRNA binding(GO:0034511)
0.1 0.2 GO:0000035 acyl binding(GO:0000035)
0.1 0.9 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.1 0.2 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.1 0.4 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.5 GO:0017022 myosin binding(GO:0017022)
0.0 0.3 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.0 0.5 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.1 GO:1990883 rRNA cytidine N-acetyltransferase activity(GO:1990883)
0.0 0.5 GO:0000014 single-stranded DNA endodeoxyribonuclease activity(GO:0000014)
0.0 0.7 GO:0008028 monocarboxylic acid transmembrane transporter activity(GO:0008028)
0.0 1.2 GO:0004693 cyclin-dependent protein serine/threonine kinase activity(GO:0004693) cyclin-dependent protein kinase activity(GO:0097472)
0.0 0.3 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.0 0.4 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.0 0.9 GO:0030276 clathrin binding(GO:0030276)
0.0 0.2 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.3 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.0 0.4 GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
0.0 0.9 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.6 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.5 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.4 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.0 0.1 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.0 0.1 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.0 1.4 GO:0043022 ribosome binding(GO:0043022)
0.0 0.2 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.0 0.2 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.0 0.9 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 0.5 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.1 GO:0035516 oxidative DNA demethylase activity(GO:0035516)
0.0 0.1 GO:0032138 single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405)
0.0 0.5 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.5 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.1 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.6 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.1 GO:0008469 histone-arginine N-methyltransferase activity(GO:0008469)
0.0 0.2 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.2 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)
0.0 0.5 GO:0004630 phospholipase D activity(GO:0004630) N-acylphosphatidylethanolamine-specific phospholipase D activity(GO:0070290)
0.0 0.2 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 1.4 GO:0030145 manganese ion binding(GO:0030145)
0.0 0.1 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.0 0.1 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.0 0.1 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.0 1.8 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.1 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216) SUMO transferase activity(GO:0019789)
0.0 0.1 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.2 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.6 GO:0036002 pre-mRNA binding(GO:0036002)
0.0 0.3 GO:0003996 acyl-CoA ligase activity(GO:0003996) decanoate--CoA ligase activity(GO:0102391)
0.0 0.1 GO:0008192 mRNA guanylyltransferase activity(GO:0004484) polynucleotide 5'-phosphatase activity(GO:0004651) RNA guanylyltransferase activity(GO:0008192) polynucleotide phosphatase activity(GO:0098518)
0.0 0.1 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 0.1 GO:0004366 glycerol-3-phosphate O-acyltransferase activity(GO:0004366) linoleic acid epoxygenase activity(GO:0071614)
0.0 0.1 GO:0052626 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628)
0.0 0.2 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.5 GO:0019199 transmembrane receptor protein kinase activity(GO:0019199)
0.0 0.2 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.0 0.4 GO:0060090 binding, bridging(GO:0060090)
0.0 0.3 GO:0008061 chitin binding(GO:0008061)
0.0 0.4 GO:0008144 drug binding(GO:0008144)
0.0 0.1 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.0 0.1 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.0 0.3 GO:0034647 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 0.6 GO:0051087 chaperone binding(GO:0051087)
0.0 0.5 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.2 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.2 GO:0050307 sucrose-phosphate phosphatase activity(GO:0050307)
0.0 0.2 GO:0003916 DNA topoisomerase activity(GO:0003916)
0.0 1.5 GO:0051082 unfolded protein binding(GO:0051082)
0.0 0.8 GO:0016597 amino acid binding(GO:0016597)
0.0 1.2 GO:0044389 ubiquitin-like protein ligase binding(GO:0044389)
0.0 0.3 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.9 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.7 GO:0004713 protein tyrosine kinase activity(GO:0004713)
0.0 0.1 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.0 0.1 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.9 GO:0019887 protein kinase regulator activity(GO:0019887)
0.0 0.3 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.1 GO:0030371 translation repressor activity(GO:0030371) translation regulator activity(GO:0045182)
0.0 0.3 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.1 GO:0019904 protein domain specific binding(GO:0019904)
0.0 0.2 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0 0.3 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.1 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.0 0.4 GO:0004564 beta-fructofuranosidase activity(GO:0004564)
0.0 0.1 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.0 0.6 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.3 GO:0008641 small protein activating enzyme activity(GO:0008641)
0.0 0.1 GO:0004049 anthranilate synthase activity(GO:0004049)
0.0 0.1 GO:0019172 glyoxalase III activity(GO:0019172)
0.0 0.1 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 0.3 GO:0022843 voltage-gated cation channel activity(GO:0022843)
0.0 0.1 GO:0035198 miRNA binding(GO:0035198)
0.0 0.8 GO:0008173 RNA methyltransferase activity(GO:0008173)
0.0 0.1 GO:0004075 biotin carboxylase activity(GO:0004075)
0.0 0.3 GO:0032296 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)
0.0 0.4 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 1.1 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.1 GO:0052852 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.0 0.8 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.2 GO:0051117 ATPase binding(GO:0051117)
0.0 1.4 GO:0016298 lipase activity(GO:0016298)
0.0 0.1 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.4 GO:0061733 histone acetyltransferase activity(GO:0004402) peptide-lysine-N-acetyltransferase activity(GO:0061733)
0.0 0.1 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.1 GO:0000150 recombinase activity(GO:0000150)
0.0 0.1 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367) oxidative phosphorylation uncoupler activity(GO:0017077)
0.0 0.9 GO:0036459 thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459)
0.0 0.1 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.1 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.0 3.5 GO:0005198 structural molecule activity(GO:0005198)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.1 GO:0016151 nickel cation binding(GO:0016151)
0.0 1.3 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.3 GO:0080031 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.0 0.8 GO:0043621 protein self-association(GO:0043621)
0.0 0.3 GO:0033558 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.0 0.1 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.3 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.4 GO:0015079 potassium ion transmembrane transporter activity(GO:0015079)
0.0 0.1 GO:0008409 5'-3' exonuclease activity(GO:0008409)
0.0 0.8 GO:0000149 SNARE binding(GO:0000149)
0.0 8.9 GO:0004672 protein kinase activity(GO:0004672)
0.0 0.9 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.0 GO:0010296 prenylcysteine methylesterase activity(GO:0010296)
0.0 0.2 GO:0000049 tRNA binding(GO:0000049)
0.0 0.1 GO:0032977 membrane insertase activity(GO:0032977)
0.0 0.1 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.2 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:0101005 ubiquitinyl hydrolase activity(GO:0101005)
0.0 0.4 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 0.0 GO:0008297 single-stranded DNA exodeoxyribonuclease activity(GO:0008297)
0.0 0.1 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 0.1 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 PID TCPTP PATHWAY Signaling events mediated by TCPTP
0.1 0.4 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.1 0.6 PID KIT PATHWAY Signaling events mediated by Stem cell factor receptor (c-Kit)
0.1 0.1 PID ARF 3PATHWAY Arf1 pathway
0.1 0.1 PID IL4 2PATHWAY IL4-mediated signaling events
0.1 0.2 PID RAS PATHWAY Regulation of Ras family activation
0.1 0.2 PID VEGFR1 2 PATHWAY Signaling events mediated by VEGFR1 and VEGFR2
0.1 0.3 SIG CHEMOTAXIS Genes related to chemotaxis
0.1 0.3 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.1 0.5 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.1 0.5 PID TELOMERASE PATHWAY Regulation of Telomerase
0.0 0.1 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway
0.0 0.2 PID ATM PATHWAY ATM pathway
0.0 0.2 ST FAS SIGNALING PATHWAY Fas Signaling Pathway
0.0 0.1 PID SHP2 PATHWAY SHP2 signaling
0.0 0.1 SA G1 AND S PHASES Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition.

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.0 REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES Genes involved in Loss of Nlp from mitotic centrosomes
0.2 1.4 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.2 0.6 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.2 0.8 REACTOME GLUCOSE TRANSPORT Genes involved in Glucose transport
0.1 0.6 REACTOME SIGNALING BY SCF KIT Genes involved in Signaling by SCF-KIT
0.1 0.2 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism
0.1 0.1 REACTOME FRS2 MEDIATED CASCADE Genes involved in FRS2-mediated cascade
0.1 0.1 REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE Genes involved in Synthesis of PIPs at the Golgi membrane
0.0 0.1 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.0 0.2 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.3 REACTOME SIGNALING BY RHO GTPASES Genes involved in Signaling by Rho GTPases
0.0 0.1 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
0.0 0.1 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.0 0.3 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination
0.0 0.3 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.5 REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex
0.0 0.2 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism