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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G40260

Z-value: 1.58

Transcription factors associated with AT2G40260

Gene Symbol Gene ID Gene Info
AT2G40260
AT2G40260 Homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT2G40260arTal_v1_Chr2_-_16818730_16818730-0.391.6e-01Click!

Activity profile of AT2G40260 motif

Sorted Z-values of AT2G40260 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_2449434 2.35 AT4G04840.1
MSRB6
methionine sulfoxide reductase B6
Chr4_+_6826587 2.03 AT4G11190.1
AT4G11190
Disease resistance-responsive (dirigent-like protein) family protein
Chr1_-_4835089 1.97 AT1G14120.2
AT1G14120.1
AT1G14120.3
AT1G14120
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_-_11194897 1.90 AT3G29250.2
AT3G29250.1
SDR4
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_2747936 1.83 AT1G08630.6
AT1G08630.7
AT1G08630.5
AT1G08630.2
THA1
threonine aldolase 1
Chr2_-_8533779 1.73 AT2G19800.1
MIOX2
myo-inositol oxygenase 2
Chr1_+_12851983 1.73 AT1G35140.1
PHI-1
Phosphate-responsive 1 family protein
Chr3_-_12451556 1.71 AT3G30775.2
AT3G30775.1
ERD5
Methylenetetrahydrofolate reductase family protein
Chr1_-_7391603 1.64 AT1G21110.1
IGMT3
O-methyltransferase family protein
Chr4_-_9754161 1.62 AT4G17490.1
ERF6
ethylene responsive element binding factor 6
Chr5_-_19036938 1.58 AT5G46890.1
AT5G46890
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_11195171 1.50 AT3G29250.3
SDR4
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_+_13036814 1.49 AT2G30600.4
AT2G30600.5
AT2G30600.1
AT2G30600.3
AT2G30600
BTB/POZ domain-containing protein
Chr2_+_13037238 1.47 AT2G30600.6
AT2G30600.2
AT2G30600
BTB/POZ domain-containing protein
Chr5_+_1119937 1.46 AT5G04120.1
AT5G04120
Phosphoglycerate mutase family protein
Chr1_-_5160179 1.41 AT1G14960.1
AT1G14960
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr2_+_12588191 1.40 AT2G29300.2
AT2G29300.1
AT2G29300
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_29130375 1.36 AT1G77520.1
AT1G77520
O-methyltransferase family protein
Chr4_-_11592238 1.34 AT4G21850.2
MSRB9
methionine sulfoxide reductase B9
Chr3_+_18465318 1.34 AT3G49780.1
PSK4
phytosulfokine 4 precursor
Chr4_+_9759203 1.33 AT4G17500.1
ERF-1
ethylene responsive element binding factor 1
Chr4_-_11592425 1.33 AT4G21850.1
MSRB9
methionine sulfoxide reductase B9
Chr4_+_5740219 1.31 AT4G08950.1
EXO
Phosphate-responsive 1 family protein
Chr2_+_3618058 1.30 AT2G08986.1
AT2G08986
hypothetical protein
Chr5_+_26772644 1.21 AT5G67080.1
MAPKKK19
mitogen-activated protein kinase kinase kinase 19
Chr4_+_13297695 1.21 AT4G26260.1
AT4G26260.2
MIOX4
myo-inositol oxygenase 4
Chr4_-_7786161 1.20 AT4G13395.1
RTFL12
ROTUNDIFOLIA like 12
Chr1_-_9128568 1.20 AT1G26380.1
AT1G26380
FAD-binding Berberine family protein
Chr1_+_28746833 1.20 AT1G76600.1
AT1G76600
poly polymerase
Chr1_-_19493122 1.18 AT1G52342.1
AT1G52342
hypothetical protein
Chr4_+_17752079 1.14 AT4G37770.1
ACS8
1-amino-cyclopropane-1-carboxylate synthase 8
Chr5_-_20016857 1.14 AT5G49360.1
BXL1
beta-xylosidase 1
Chr2_-_9896325 1.13 AT2G23240.2
AT2G23240.1
AtMT4b
Plant EC metallothionein-like protein, family 15
Chr2_-_19019255 1.13 AT2G46330.2
AT2G46330.1
AGP16
arabinogalactan protein 16
Chr4_-_16703486 1.11 AT4G35090.3
AT4G35090.1
CAT2
catalase 2
Chr4_-_17355891 1.11 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr5_+_26447642 1.11 AT5G66170.3
AT5G66170.2
AT5G66170.1
STR18
sulfurtransferase 18
Chr1_-_575085 1.11 AT1G02660.1
AT1G02660
alpha/beta-Hydrolases superfamily protein
Chr4_-_16703286 1.11 AT4G35090.2
CAT2
catalase 2
Chr1_+_3777236 1.10 AT1G11260.1
STP1
sugar transporter 1
Chr2_+_15706285 1.09 AT2G37430.1
ZAT11
C2H2 and C2HC zinc fingers superfamily protein
Chr3_-_18469962 1.08 AT3G49790.1
AT3G49790
Carbohydrate-binding protein
Chr1_-_2747243 1.07 AT1G08630.1
THA1
threonine aldolase 1
Chr4_+_6832650 1.06 AT4G11210.1
AT4G11210
Disease resistance-responsive (dirigent-like protein) family protein
Chr1_-_2746526 1.05 AT1G08630.4
THA1
threonine aldolase 1
Chr1_-_2746740 1.05 AT1G08630.3
THA1
threonine aldolase 1
Chr4_-_12006209 1.05 AT4G22880.2
AT4G22880.1
AT4G22880.3
LDOX
leucoanthocyanidin dioxygenase
Chr5_+_22652715 1.05 AT5G55930.1
OPT1
oligopeptide transporter 1
Chr2_+_10992728 1.04 AT2G25770.1
AT2G25770.2
AT2G25770
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr1_-_9956960 1.03 AT1G28370.1
AT1G28370.2
ERF11
ERF domain protein 11
Chr5_+_3783930 1.02 AT5G11740.1
AGP15
arabinogalactan protein 15
Chr5_-_17962276 1.01 AT5G44568.1
AT5G44568
transmembrane protein
Chr2_+_13820909 1.01 AT2G32550.3
AT2G32550.1
AT2G32550
Cell differentiation, Rcd1-like protein
Chr2_+_16507882 1.01 AT2G39570.1
ACR9
ACT domain-containing protein
Chr4_+_15676240 1.00 AT4G32480.1
AT4G32480
sugar phosphate exchanger, putative (DUF506)
Chr1_+_2927502 1.00 AT1G09070.1
SRC2
soybean gene regulated by cold-2
Chr2_-_16545746 1.00 AT2G39700.1
EXPA4
expansin A4
Chr4_+_14026577 0.99 AT4G28350.1
AT4G28350
Concanavalin A-like lectin protein kinase family protein
Chr1_-_8310916 0.96 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
Chr5_-_7366799 0.94 AT5G22250.1
CAF1b
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr4_+_10375244 0.92 AT4G18950.1
AT4G18950.2
AT4G18950
Integrin-linked protein kinase family
Chr5_-_17025361 0.92 AT5G42580.1
CYP705A12
cytochrome P450, family 705, subfamily A, polypeptide 12
Chr4_-_8138392 0.92 AT4G14130.1
XTH15
xyloglucan endotransglucosylase/hydrolase 15
Chr5_+_20051829 0.91 AT5G49450.1
bZIP1
basic leucine-zipper 1
Chr1_+_26464226 0.90 AT1G70270.2
AT1G70270.1
AT1G70270
transcription factor
Chr5_-_26906517 0.90 AT5G67420.1
AT5G67420.2
LBD37
LOB domain-containing protein 37
Chr1_+_5596633 0.90 AT1G16370.1
OCT6
organic cation/carnitine transporter 6
Chr5_+_13949228 0.89 AT5G35777.1
AT5G35777

Chr1_+_29502506 0.89 AT1G78410.1
AT1G78410.2
AT1G78410
VQ motif-containing protein
Chr1_-_21063047 0.89 AT1G56250.1
PP2-B14
phloem protein 2-B14
Chr5_+_14912659 0.89 AT5G37540.1
AT5G37540
Eukaryotic aspartyl protease family protein
Chr1_+_852151 0.87 AT1G03440.1
AT1G03440
Leucine-rich repeat (LRR) family protein
Chr5_+_6921509 0.87 AT5G20480.2
AT5G20480.1
EFR
EF-TU receptor
Chr4_-_6632641 0.86 AT4G10770.2
AT4G10770.1
OPT7
oligopeptide transporter 7
Chr5_-_442187 0.86 AT5G02220.1
AT5G02220
cyclin-dependent kinase inhibitor
Chr2_-_108803 0.86 AT2G01180.7
AT2G01180.2
AT2G01180.5
AT2G01180.1
AT2G01180.8
AT2G01180.4
AT2G01180.3
PAP1
phosphatidic acid phosphatase 1
Chr5_-_14999619 0.85 AT5G37770.1
AT5G37770.2
TCH2
EF hand calcium-binding protein family
Chr5_-_19447149 0.84 AT5G48000.7
AT5G48000.4
AT5G48000.2
AT5G48000.3
AT5G48000.5
AT5G48000.6
CYP708A2
cytochrome P450, family 708, subfamily A, polypeptide 2
Chr4_-_524249 0.84 AT4G01250.1
WRKY22
WRKY family transcription factor
Chr4_-_7421828 0.83 AT4G12520.1
AT4G12520
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_18767529 0.83 AT3G50570.1
AT3G50570.2
AT3G50570
hydroxyproline-rich glycoprotein family protein
Chr2_-_16111911 0.82 AT2G38480.1
AT2G38480
Uncharacterized protein family (UPF0497)
Chr2_-_18401339 0.82 AT2G44578.1
AT2G44578
RING/U-box superfamily protein
Chr2_+_16108235 0.82 AT2G38470.1
WRKY33
WRKY DNA-binding protein 33
Chr2_+_9903215 0.82 AT2G23270.1
AT2G23270
transmembrane protein
Chr3_-_18611262 0.81 AT3G50190.2
AT3G50190.1
AT3G50190.3
AT3G50190.4
AT3G50190
transmembrane protein, putative (DUF247)
Chr5_+_9656949 0.81 AT5G27360.3
AT5G27360.2
AT5G27360.1
AT5G27360.4
SFP2
Major facilitator superfamily protein
Chr5_+_7205477 0.81 AT5G21170.1
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr5_-_23992908 0.81 AT5G59520.1
ZIP2
ZRT/IRT-like protein 2
Chr4_-_3950602 0.81 AT4G06700.1
AT4G06700

Chr3_+_9208861 0.79 AT3G25290.1
AT3G25290.2
AT3G25290
Auxin-responsive family protein
Chr5_-_4206458 0.79 AT5G13190.2
AT5G13190.1
GILP
GSH-induced LITAF domain protein
Chr4_+_15230008 0.79 AT4G31380.1
FLP1
flowering-promoting factor-like protein
Chr1_-_749034 0.79 AT1G03106.1
AT1G03106
hypothetical protein
Chr4_+_17524461 0.78 AT4G37240.1
AT4G37240
HTH-type transcriptional regulator
Chr5_+_15949910 0.78 AT5G39850.1
AT5G39850
Ribosomal protein S4
Chr1_-_22595338 0.77 AT1G61260.1
AT1G61260
cotton fiber (DUF761)
Chr1_-_12897675 0.77 AT1G35210.1
AT1G35210
hypothetical protein
Chr5_-_20940895 0.77 AT5G51550.1
EXL3
EXORDIUM like 3
Chr3_-_9712826 0.77 AT3G26510.5
AT3G26510.4
AT3G26510.1
AT3G26510.6
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr5_+_7205667 0.77 AT5G21170.2
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr3_+_8610979 0.76 AT3G23840.1
AT3G23840
HXXXD-type acyl-transferase family protein
Chr4_+_10372658 0.76 AT4G18940.1
AT4G18940
RNA ligase/cyclic nucleotide phosphodiesterase family protein
Chr3_-_9712659 0.76 AT3G26510.3
AT3G26510.7
AT3G26510.2
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr2_+_10995095 0.76 AT2G25780.1
AT2G25780
hypothetical protein (DUF1677)
Chr3_+_1172687 0.75 AT3G04420.2
AT3G04420.1
NAC048
NAC domain containing protein 48
Chr4_-_18275017 0.75 AT4G39260.4
AT4G39260.3
AT4G39260.2
AT4G39260.1
CCR1
cold, circadian rhythm, and RNA binding 1
Chr1_+_5058583 0.74 AT1G14700.4
AT1G14700.1
AT1G14700.3
AT1G14700.2
PAP3
purple acid phosphatase 3
Chr2_+_13256091 0.73 AT2G31090.1
AT2G31090
transmembrane protein
Chr1_+_7346156 0.73 AT1G21010.1
AT1G21010
poly polymerase
Chr4_+_16277282 0.72 AT4G33960.1
AT4G33960
hypothetical protein
Chr5_-_26804249 0.72 AT5G67180.1
AT5G67180.3
AT5G67180.4
AT5G67180.2
TOE3
target of early activation tagged (EAT) 3
Chr5_+_8042853 0.71 AT5G23860.1
AT5G23860.2
TUB8
tubulin beta 8
Chr1_+_25493193 0.71 AT1G68010.1
AT1G68010.2
AT1G68010.3
HPR
hydroxypyruvate reductase
Chr1_-_25065446 0.71 AT1G67110.1
AT1G67110.2
CYP735A2
cytochrome P450, family 735, subfamily A, polypeptide 2
Chr5_+_4541780 0.71 AT5G14070.1
ROXY2
Thioredoxin superfamily protein
Chr1_-_2621545 0.71 AT1G08315.1
AT1G08315
ARM repeat superfamily protein
Chr4_+_9906821 0.71 AT4G17810.1
AT4G17810.2
AT4G17810
C2H2 and C2HC zinc fingers superfamily protein
Chr3_+_17051520 0.70 AT3G46370.1
AT3G46370.2
AT3G46370
Leucine-rich repeat protein kinase family protein
Chr1_+_10244453 0.70 AT1G29290.1
AT1G29290
B-cell lymphoma 6 protein
Chr2_+_5741592 0.70 AT2G13790.1
SERK4
somatic embryogenesis receptor-like kinase 4
Chr1_+_2873465 0.70 AT1G08930.2
ERD6
Major facilitator superfamily protein
Chr1_+_2873300 0.69 AT1G08930.1
ERD6
Major facilitator superfamily protein
Chr5_+_21216772 0.69 AT5G52250.1
RUP1
Transducin/WD40 repeat-like superfamily protein
Chr4_-_17550257 0.69 AT4G37290.1
AT4G37290
transmembrane protein
Chr5_+_427642 0.69 AT5G02170.1
AT5G02170.2
AT5G02170
Transmembrane amino acid transporter family protein
Chr4_-_17300367 0.69 AT4G36700.1
AT4G36700
RmlC-like cupins superfamily protein
Chr3_-_17902872 0.68 AT3G48344.1
AT3G48344
hypothetical protein
Chr2_-_13631929 0.68 AT2G32020.1
AT2G32020
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr5_-_2622900 0.68 AT5G08150.1
SOB5
suppressor of phytochrome b 5
Chr2_+_8093220 0.68 AT2G18670.1
AT2G18670
RING/U-box superfamily protein
Chr4_+_18539511 0.68 AT4G39980.1
DHS1
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1
Chr5_-_573634 0.67 AT5G02550.1
AT5G02550
hypothetical protein
Chr2_-_13523918 0.67 AT2G31800.1
AT2G31800
Integrin-linked protein kinase family
Chr3_-_6491429 0.67 AT3G18830.1
PMT5
polyol/monosaccharide transporter 5
Chr2_-_108231 0.67 AT2G01180.6
PAP1
phosphatidic acid phosphatase 1
Chr1_+_27127170 0.67 AT1G72100.1
AT1G72100
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Chr2_+_15553651 0.67 AT2G37030.1
AT2G37030
SAUR-like auxin-responsive protein family
Chr1_-_22243760 0.66 AT1G60360.1
AT1G60360
RING/U-box superfamily protein
Chr1_-_28765866 0.66 AT1G76640.1
AT1G76640
Calcium-binding EF-hand family protein
Chr2_+_17495506 0.65 AT2G41905.1
AT2G41905
transmembrane protein
Chr1_-_436922 0.65 AT1G02230.1
NAC004
NAC domain containing protein 4
Chr3_+_16123426 0.65 AT3G44540.1
AT3G44540.3
FAR4
fatty acid reductase 4
Chr5_+_1231609 0.65 AT5G04370.1
AT5G04370.3
AT5G04370.2
NAMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_8890927 0.65 AT3G24460.1
AT3G24460
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr5_-_25931384 0.65 AT5G64870.1
AT5G64870
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr5_-_19542760 0.65 AT5G48180.1
NSP5
nitrile specifier protein 5
Chr4_-_18459257 0.65 AT4G39780.1
AT4G39780
Integrase-type DNA-binding superfamily protein
Chr5_+_9658422 0.64 AT5G27360.5
SFP2
Major facilitator superfamily protein
Chr2_+_13819352 0.64 AT2G32550.2
AT2G32550
Cell differentiation, Rcd1-like protein
Chr1_+_27446236 0.64 AT1G72960.2
AT1G72960
Root hair defective 3 GTP-binding protein (RHD3)
Chr1_+_27446069 0.64 AT1G72960.1
AT1G72960
Root hair defective 3 GTP-binding protein (RHD3)
Chr5_-_157601 0.64 AT5G01380.1
AT5G01380
Homeodomain-like superfamily protein
Chr5_-_19447866 0.64 AT5G48000.1
CYP708A2
cytochrome P450, family 708, subfamily A, polypeptide 2
Chr4_+_18519599 0.64 AT4G39940.1
AKN2
APS-kinase 2
Chr4_-_8464485 0.64 AT4G14746.1
AT4G14746.2
AT4G14746
neurogenic locus notch-like protein
Chr5_+_20820068 0.64 AT5G51210.1
OLEO3
oleosin3
Chr1_+_25957823 0.64 AT1G69040.1
ACR4
ACT domain repeat 4
Chr3_+_1121950 0.64 AT3G04250.1
AT3G04250
F-box associated ubiquitination effector family protein
Chr5_-_8707885 0.63 AT5G25190.1
ESE3
Integrase-type DNA-binding superfamily protein
Chr1_+_25957567 0.63 AT1G69040.2
ACR4
ACT domain repeat 4
Chr4_-_16740601 0.63 AT4G35180.2
AT4G35180.1
LHT7
LYS/HIS transporter 7
Chr1_+_30191538 0.63 AT1G80300.1
NTT1
nucleotide transporter 1
Chr2_+_18333370 0.63 AT2G44430.1
AT2G44430
DNA-binding bromodomain-containing protein
Chr1_-_23392873 0.63 AT1G63090.1
PP2-A11
phloem protein 2-A11
Chr1_-_7989217 0.63 AT1G22600.1
AT1G22600
Late embryogenesis abundant protein (LEA) family protein
Chr5_-_18371021 0.62 AT5G45340.2
AT5G45340.1
CYP707A3
cytochrome P450, family 707, subfamily A, polypeptide 3
Chr1_-_25670345 0.62 AT1G68460.1
IPT1
isopentenyltransferase 1
Chr3_-_15355494 0.62 AT3G43430.1
AT3G43430
RING/U-box superfamily protein
Chr3_+_9413052 0.62 AT3G25790.2
AT3G25790.1
AT3G25790
myb-like transcription factor family protein
Chr5_-_26218623 0.61 AT5G65600.1
AT5G65600
Concanavalin A-like lectin protein kinase family protein
Chr3_+_7166027 0.61 AT3G20530.1
AT3G20530.2
AT3G20530
Protein kinase superfamily protein
Chr2_-_13488691 0.61 AT2G31730.2
AT2G31730
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_25502864 0.61 AT1G68040.1
AT1G68040
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_550349 0.61 AT4G01330.2
AT4G01330.3
AT4G01330
Protein kinase superfamily protein
Chr1_+_21707175 0.61 AT1G58420.1
AT1G58420
Uncharacterized conserved protein UCP031279
Chr5_+_21582614 0.61 AT5G53200.1
TRY
Homeodomain-like superfamily protein
Chr2_-_425810 0.60 AT2G01918.1
PQL3
PsbQ-like 3
Chr5_+_8773734 0.60 AT5G25280.1
AT5G25280.3
AT5G25280.2
AT5G25280
serine-rich protein-like protein
Chr1_-_4090857 0.60 AT1G12090.1
ELP
extensin-like protein
Chr2_-_2603484 0.60 AT2G06550.1
AT2G06550

Chr3_-_7113899 0.60 AT3G20395.1
AT3G20395
RING/U-box superfamily protein
Chr1_+_4318309 0.60 AT1G12672.2
AT1G12672
thionin-like protein
Chr4_-_14012583 0.60 AT4G28290.1
AT4G28290.2
AT4G28290
hypothetical protein
Chr1_+_26079956 0.60 AT1G69370.1
CM3
chorismate mutase 3
Chr1_+_11188120 0.60 AT1G31290.2
AT1G31290.3
AT1G31290.1
AGO3
ARGONAUTE 3
Chr3_-_9964737 0.59 AT3G27020.1
YSL6
YELLOW STRIPE like 6
Chr1_+_7886323 0.59 AT1G22330.1
AT1G22330
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr2_-_15014147 0.59 AT2G35710.3
AT2G35710.4
AT2G35710.1
PGSIP7
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_26126560 0.59 AT5G65380.1
AT5G65380
MATE efflux family protein
Chr4_+_550175 0.59 AT4G01330.1
AT4G01330
Protein kinase superfamily protein
Chr1_+_20525654 0.59 AT1G55020.1
LOX1
lipoxygenase 1
Chr2_-_13489679 0.59 AT2G31730.1
AT2G31730
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_-_12334788 0.59 AT2G28755.2
AT2G28755.1
AT2G28755
UDP-D-glucuronate carboxy-lyase-like protein
Chr3_-_19453212 0.58 AT3G52480.1
AT3G52480
transmembrane protein
Chr1_-_25176230 0.58 AT1G67265.1
RTFL21
ROTUNDIFOLIA like 21
Chr2_+_13581534 0.58 AT2G31945.1
AT2G31945
transmembrane protein
Chr2_-_13657369 0.58 AT2G32140.1
AT2G32140
transmembrane receptor
Chr3_-_20338598 0.58 AT3G54880.1
AT3G54880
zinc finger protein
Chr2_+_14836062 0.58 AT2G35210.2
AT2G35210.1
RPA
root and pollen arfgap

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G40260

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 5.0 GO:0006567 threonine catabolic process(GO:0006567)
0.6 2.9 GO:0019310 inositol catabolic process(GO:0019310)
0.4 1.5 GO:0080003 thalianol metabolic process(GO:0080003)
0.4 1.5 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.4 1.1 GO:0010045 response to nickel cation(GO:0010045)
0.3 1.3 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.2 0.5 GO:0051176 positive regulation of sulfur metabolic process(GO:0051176)
0.2 0.7 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.2 1.1 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.2 1.1 GO:0097036 regulation of plasma membrane sterol distribution(GO:0097036)
0.2 0.8 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322)
0.2 0.6 GO:0006210 thymine catabolic process(GO:0006210) thymine metabolic process(GO:0019859)
0.2 0.6 GO:0055089 fatty acid homeostasis(GO:0055089)
0.2 2.8 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.2 0.6 GO:0071422 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.2 0.7 GO:0015720 allantoin transport(GO:0015720)
0.2 1.4 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.2 1.3 GO:0031222 arabinan catabolic process(GO:0031222)
0.2 0.8 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.2 4.1 GO:0030091 protein repair(GO:0030091)
0.2 0.5 GO:0055064 chloride ion homeostasis(GO:0055064)
0.2 1.1 GO:0009187 cyclic nucleotide metabolic process(GO:0009187)
0.2 0.9 GO:0016107 sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345)
0.1 0.6 GO:0048205 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.1 1.7 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.1 1.6 GO:0015749 monosaccharide transport(GO:0015749)
0.1 1.2 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.9 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.1 0.5 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.1 0.4 GO:0015840 urea transport(GO:0015840)
0.1 0.7 GO:1901271 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.1 1.1 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.1 1.0 GO:0045903 positive regulation of translational fidelity(GO:0045903)
0.1 0.4 GO:0010062 negative regulation of cell fate specification(GO:0009996) negative regulation of trichoblast fate specification(GO:0010062) negative regulation of plant epidermal cell differentiation(GO:1903889)
0.1 2.0 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.1 0.5 GO:0070509 calcium ion import(GO:0070509)
0.1 1.6 GO:0010120 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.1 0.4 GO:0010269 response to selenium ion(GO:0010269)
0.1 0.8 GO:0080117 secondary growth(GO:0080117)
0.1 0.8 GO:0009745 sucrose mediated signaling(GO:0009745)
0.1 0.6 GO:0043409 negative regulation of MAP kinase activity(GO:0043407) negative regulation of MAPK cascade(GO:0043409)
0.1 0.3 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.1 0.9 GO:0016045 detection of bacterium(GO:0016045)
0.1 0.4 GO:0006768 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102) pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
0.1 0.8 GO:0048446 petal morphogenesis(GO:0048446)
0.1 0.3 GO:0017145 stem cell division(GO:0017145)
0.1 0.6 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.1 0.3 GO:0045827 negative regulation of isoprenoid metabolic process(GO:0045827)
0.1 1.4 GO:0006949 syncytium formation(GO:0006949)
0.1 0.4 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.1 0.5 GO:0007043 cell-cell junction assembly(GO:0007043)
0.1 0.3 GO:0042148 DNA recombinase assembly(GO:0000730) strand invasion(GO:0042148)
0.1 1.6 GO:0006521 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.1 0.9 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.1 0.5 GO:0070199 establishment of mitotic sister chromatid cohesion(GO:0034087) establishment of protein localization to chromosome(GO:0070199) rDNA condensation(GO:0070550) establishment of protein localization to chromatin(GO:0071169) transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.1 0.3 GO:0010185 regulation of cellular defense response(GO:0010185)
0.1 0.4 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.1 2.0 GO:0009556 microsporogenesis(GO:0009556)
0.1 0.3 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.1 0.3 GO:0045332 phospholipid translocation(GO:0045332)
0.1 0.5 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.1 0.2 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.1 0.4 GO:0015940 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.1 0.2 GO:0019695 choline metabolic process(GO:0019695)
0.1 1.0 GO:0046620 regulation of organ growth(GO:0046620)
0.1 0.8 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.1 1.1 GO:0015976 carbon utilization(GO:0015976)
0.1 0.5 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.1 0.6 GO:0018344 protein geranylgeranylation(GO:0018344)
0.1 0.4 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.1 0.7 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.1 0.3 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.1 0.2 GO:0030811 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.1 0.3 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.1 0.5 GO:0080187 floral organ senescence(GO:0080187)
0.1 0.2 GO:0072337 modified amino acid transport(GO:0072337)
0.1 0.5 GO:0045487 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.1 0.5 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.1 0.2 GO:0046786 viral replication complex formation and maintenance(GO:0046786)
0.1 1.9 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.1 0.6 GO:0048236 plant-type spore development(GO:0048236)
0.1 0.5 GO:0046337 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.1 0.2 GO:0043181 vacuolar sequestering(GO:0043181)
0.1 0.2 GO:1902289 negative regulation of defense response to oomycetes(GO:1902289)
0.1 1.0 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.1 0.4 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.1 0.4 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.1 0.9 GO:0046417 chorismate metabolic process(GO:0046417)
0.1 2.3 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.1 0.5 GO:0050667 transsulfuration(GO:0019346) homocysteine metabolic process(GO:0050667)
0.1 0.2 GO:0042766 nucleosome mobilization(GO:0042766)
0.1 0.2 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.1 0.8 GO:0030497 fatty acid elongation(GO:0030497)
0.1 0.4 GO:0090057 root radial pattern formation(GO:0090057)
0.1 0.5 GO:1990118 sodium ion transmembrane transport(GO:0035725) sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.1 0.1 GO:0006427 histidyl-tRNA aminoacylation(GO:0006427)
0.1 0.5 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.1 0.2 GO:0042539 hypotonic salinity response(GO:0042539)
0.1 4.8 GO:0010087 phloem or xylem histogenesis(GO:0010087)
0.1 0.2 GO:1990428 miRNA transport(GO:1990428)
0.1 0.8 GO:0080027 response to herbivore(GO:0080027)
0.1 0.3 GO:0022610 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.1 0.2 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.0 0.4 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.0 0.1 GO:0016118 tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
0.0 0.1 GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.0 0.3 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.3 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.0 0.1 GO:0050000 chromosome localization(GO:0050000) protein localization to nuclear envelope(GO:0090435)
0.0 0.8 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 0.2 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.0 0.7 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.0 0.2 GO:0006651 diacylglycerol biosynthetic process(GO:0006651)
0.0 0.8 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.0 0.2 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.0 0.2 GO:0010500 transmitting tissue development(GO:0010500)
0.0 0.7 GO:0006032 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.2 GO:0010677 negative regulation of cellular carbohydrate metabolic process(GO:0010677)
0.0 1.0 GO:0019915 lipid storage(GO:0019915)
0.0 0.3 GO:2000779 regulation of double-strand break repair(GO:2000779)
0.0 0.3 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.2 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.0 0.2 GO:0008300 isoprenoid catabolic process(GO:0008300)
0.0 0.5 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 1.1 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 1.2 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 1.2 GO:0006829 zinc II ion transport(GO:0006829)
0.0 0.2 GO:0051031 tRNA export from nucleus(GO:0006409) tRNA transport(GO:0051031) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431)
0.0 1.8 GO:0009690 cytokinin metabolic process(GO:0009690)
0.0 1.0 GO:0060548 negative regulation of cell death(GO:0060548)
0.0 0.1 GO:0001578 microtubule bundle formation(GO:0001578)
0.0 0.3 GO:0016094 polyprenol biosynthetic process(GO:0016094)
0.0 0.5 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.1 GO:1904580 regulation of intracellular mRNA localization(GO:1904580)
0.0 1.1 GO:0042335 cuticle development(GO:0042335)
0.0 0.4 GO:0080086 stamen filament development(GO:0080086)
0.0 0.2 GO:0043153 entrainment of circadian clock by photoperiod(GO:0043153)
0.0 0.8 GO:0008360 regulation of cell shape(GO:0008360)
0.0 0.1 GO:0000256 allantoin catabolic process(GO:0000256)
0.0 0.4 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 0.2 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.0 0.3 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.0 0.7 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 0.2 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.0 0.6 GO:0009685 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.0 1.4 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.1 GO:0006426 glycyl-tRNA aminoacylation(GO:0006426)
0.0 0.6 GO:0010048 vernalization response(GO:0010048)
0.0 0.3 GO:0045116 protein neddylation(GO:0045116)
0.0 0.1 GO:0009915 phloem sucrose loading(GO:0009915)
0.0 0.1 GO:0006425 glutaminyl-tRNA aminoacylation(GO:0006425)
0.0 0.7 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 0.1 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.0 0.2 GO:0032878 regulation of establishment or maintenance of cell polarity(GO:0032878) regulation of establishment of cell polarity(GO:2000114)
0.0 0.5 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 1.1 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.3 GO:0007143 female meiotic division(GO:0007143)
0.0 0.3 GO:0097577 intracellular sequestering of iron ion(GO:0006880) cellular manganese ion homeostasis(GO:0030026) sequestering of iron ion(GO:0097577)
0.0 0.5 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862)
0.0 1.5 GO:0048278 vesicle docking(GO:0048278)
0.0 0.2 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.0 0.2 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.0 1.1 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.1 GO:0006531 2-oxoglutarate metabolic process(GO:0006103) aspartate metabolic process(GO:0006531)
0.0 0.2 GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288)
0.0 0.1 GO:0010508 positive regulation of autophagy(GO:0010508)
0.0 0.3 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0 1.2 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.0 0.3 GO:0010337 regulation of salicylic acid metabolic process(GO:0010337)
0.0 0.3 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.1 GO:0071323 cellular response to chitin(GO:0071323)
0.0 0.2 GO:1902533 positive regulation of intracellular signal transduction(GO:1902533)
0.0 5.0 GO:0071456 cellular response to hypoxia(GO:0071456)
0.0 0.3 GO:0001709 cell fate determination(GO:0001709)
0.0 0.4 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.0 0.6 GO:0009083 branched-chain amino acid catabolic process(GO:0009083)
0.0 0.1 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
0.0 0.5 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 2.2 GO:0009860 pollen tube growth(GO:0009860)
0.0 0.1 GO:0015914 phospholipid transport(GO:0015914)
0.0 0.2 GO:0010158 abaxial cell fate specification(GO:0010158)
0.0 1.7 GO:0010876 lipid localization(GO:0010876)
0.0 0.8 GO:0009851 auxin biosynthetic process(GO:0009851)
0.0 0.2 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.2 GO:0034311 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.0 0.1 GO:0071423 malate transmembrane transport(GO:0071423)
0.0 0.2 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.0 0.6 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.6 GO:0042147 retrograde transport, endosome to Golgi(GO:0042147)
0.0 0.3 GO:0000122 negative regulation of transcription from RNA polymerase II promoter(GO:0000122)
0.0 0.1 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.2 GO:0080060 integument development(GO:0080060)
0.0 0.4 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 0.6 GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.0 0.2 GO:0015977 carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253)
0.0 0.4 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 0.1 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.0 0.3 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.0 0.2 GO:0043547 positive regulation of GTPase activity(GO:0043547)
0.0 0.1 GO:0036260 7-methylguanosine RNA capping(GO:0009452) RNA capping(GO:0036260)
0.0 0.1 GO:0051952 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.0 0.3 GO:0009937 regulation of gibberellic acid mediated signaling pathway(GO:0009937)
0.0 0.1 GO:0048830 adventitious root development(GO:0048830)
0.0 0.5 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.2 GO:1900426 positive regulation of defense response to bacterium(GO:1900426)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 1.2 GO:0000160 phosphorelay signal transduction system(GO:0000160)
0.0 0.1 GO:0045732 positive regulation of protein catabolic process(GO:0045732)
0.0 0.3 GO:0006935 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.0 0.3 GO:0010584 pollen exine formation(GO:0010584)
0.0 0.2 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.0 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.0 0.4 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 0.1 GO:0007009 plasma membrane organization(GO:0007009)
0.0 0.1 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.1 GO:0080186 developmental vegetative growth(GO:0080186)
0.0 0.4 GO:0009559 embryo sac central cell differentiation(GO:0009559)
0.0 0.3 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.2 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.5 GO:0018394 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.3 2.5 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.2 0.9 GO:0030062 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.1 0.4 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.1 0.6 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.1 0.7 GO:0030139 endocytic vesicle(GO:0030139)
0.1 0.4 GO:0000938 GARP complex(GO:0000938)
0.1 0.3 GO:0032044 DSIF complex(GO:0032044)
0.1 0.2 GO:0002178 palmitoyltransferase complex(GO:0002178) serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.1 0.6 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.1 0.6 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 2.2 GO:0010319 stromule(GO:0010319)
0.1 0.7 GO:0045298 tubulin complex(GO:0045298)
0.0 0.3 GO:0043078 megasporocyte nucleus(GO:0043076) polar nucleus(GO:0043078)
0.0 0.1 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.0 0.3 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 0.2 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.0 0.5 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 0.2 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.0 0.2 GO:0005719 nuclear euchromatin(GO:0005719)
0.0 1.0 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.4 GO:0043189 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.7 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.2 GO:0005776 autophagosome(GO:0005776)
0.0 0.3 GO:0010168 ER body(GO:0010168)
0.0 0.3 GO:0048226 Casparian strip(GO:0048226)
0.0 0.6 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.2 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.0 0.3 GO:0005688 U6 snRNP(GO:0005688)
0.0 0.2 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.2 GO:0030665 clathrin vesicle coat(GO:0030125) clathrin-coated vesicle membrane(GO:0030665)
0.0 0.4 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.3 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.0 0.1 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.0 0.3 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.3 GO:0031012 extracellular matrix(GO:0031012)
0.0 0.2 GO:0035861 site of double-strand break(GO:0035861)
0.0 0.3 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.2 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.2 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.0 0.1 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.1 GO:0000813 ESCRT I complex(GO:0000813)
0.0 0.3 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.0 0.2 GO:0016602 CCAAT-binding factor complex(GO:0016602)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 5.0 GO:0004793 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.6 2.9 GO:0050113 inositol oxygenase activity(GO:0050113)
0.5 2.1 GO:0048030 disaccharide binding(GO:0048030) maltose binding(GO:1901982)
0.5 5.0 GO:0033743 peptide-methionine (R)-S-oxide reductase activity(GO:0033743)
0.4 1.5 GO:0004647 phosphoserine phosphatase activity(GO:0004647)
0.2 0.7 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.2 0.7 GO:0015146 pentose transmembrane transporter activity(GO:0015146)
0.2 1.9 GO:0004096 catalase activity(GO:0004096)
0.2 0.6 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.2 0.6 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.2 0.4 GO:0015292 uniporter activity(GO:0015292)
0.2 0.6 GO:0004106 chorismate mutase activity(GO:0004106)
0.2 1.0 GO:0043682 copper-transporting ATPase activity(GO:0043682)
0.2 0.6 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.2 1.0 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.2 0.8 GO:0004112 cyclic-nucleotide phosphodiesterase activity(GO:0004112) 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity(GO:0004113)
0.2 0.9 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.2 1.1 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.2 0.5 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.2 0.9 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.2 1.4 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.2 0.7 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.2 0.5 GO:0015377 cation:chloride symporter activity(GO:0015377)
0.2 0.9 GO:0003826 alpha-ketoacid dehydrogenase activity(GO:0003826)
0.2 0.5 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.1 0.4 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.1 1.2 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 2.0 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.1 0.4 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.1 1.6 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.4 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.1 0.5 GO:0005460 UDP-glucose transmembrane transporter activity(GO:0005460)
0.1 0.7 GO:0015505 allantoin uptake transmembrane transporter activity(GO:0005274) uracil:cation symporter activity(GO:0015505) uptake transmembrane transporter activity(GO:0015563)
0.1 0.9 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.1 0.8 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 0.5 GO:0035197 siRNA binding(GO:0035197)
0.1 1.2 GO:0008199 ferric iron binding(GO:0008199)
0.1 0.3 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.1 0.6 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.1 0.3 GO:0019788 NEDD8 transferase activity(GO:0019788)
0.1 0.6 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.1 0.3 GO:0010354 homogentisate prenyltransferase activity(GO:0010354)
0.1 0.2 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 0.8 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.1 1.1 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044)
0.1 1.9 GO:0102338 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.1 1.2 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 0.3 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.1 0.2 GO:0070003 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.1 0.6 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.1 0.3 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.1 0.4 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 0.9 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 3.1 GO:0008171 O-methyltransferase activity(GO:0008171)
0.1 0.6 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.1 0.4 GO:0008430 selenium binding(GO:0008430)
0.1 0.7 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.1 1.6 GO:0010333 terpene synthase activity(GO:0010333)
0.1 2.0 GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645)
0.1 0.5 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 0.3 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.1 0.1 GO:0015116 sulfate transmembrane transporter activity(GO:0015116)
0.1 0.5 GO:0045543 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.1 0.6 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.1 0.8 GO:0008061 chitin binding(GO:0008061)
0.1 0.7 GO:0033613 activating transcription factor binding(GO:0033613)
0.1 1.5 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 0.2 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.1 0.2 GO:0047874 dolichyldiphosphatase activity(GO:0047874)
0.1 0.5 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.5 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.7 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.1 0.2 GO:0004385 guanylate kinase activity(GO:0004385)
0.1 0.2 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.1 0.8 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.1 0.5 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.1 0.3 GO:0000150 recombinase activity(GO:0000150)
0.1 0.8 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.1 0.4 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.1 0.2 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.1 1.2 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.3 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.2 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.0 0.1 GO:0051010 microtubule plus-end binding(GO:0051010)
0.0 0.3 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.0 0.1 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.0 0.3 GO:0004383 guanylate cyclase activity(GO:0004383)
0.0 0.2 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.0 0.7 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.4 GO:0008083 growth factor activity(GO:0008083)
0.0 1.3 GO:0005179 hormone activity(GO:0005179)
0.0 1.2 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.1 GO:0008665 tRNA 2'-phosphotransferase activity(GO:0000215) 2'-phosphotransferase activity(GO:0008665)
0.0 0.5 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.2 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.0 0.1 GO:1901474 L-ornithine transmembrane transporter activity(GO:0000064) azole transmembrane transporter activity(GO:1901474)
0.0 1.8 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.0 0.5 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 1.4 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 0.4 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.2 GO:0001159 core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.0 0.5 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 2.3 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.9 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.2 GO:0016004 phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229)
0.0 0.9 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.1 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.0 0.1 GO:0004819 glutamine-tRNA ligase activity(GO:0004819)
0.0 0.4 GO:0004713 protein tyrosine kinase activity(GO:0004713)
0.0 0.3 GO:0002094 polyprenyltransferase activity(GO:0002094)
0.0 0.4 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.3 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.0 0.6 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.2 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.0 0.1 GO:0098748 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.0 0.5 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 2.0 GO:0015144 carbohydrate transmembrane transporter activity(GO:0015144)
0.0 0.4 GO:0016018 cyclosporin A binding(GO:0016018)
0.0 0.1 GO:0015928 fucosidase activity(GO:0015928)
0.0 0.3 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.3 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.0 1.1 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.2 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.0 0.4 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.0 0.2 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.0 1.3 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 1.0 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.2 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.0 0.3 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.2 GO:0043855 intracellular cyclic nucleotide activated cation channel activity(GO:0005221) cyclic nucleotide-gated ion channel activity(GO:0043855)
0.0 0.2 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 0.6 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.0 0.4 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.2 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.0 0.3 GO:0045551 cinnamyl-alcohol dehydrogenase activity(GO:0045551)
0.0 0.1 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.0 0.1 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.0 0.6 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.0 0.2 GO:0031127 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.0 0.6 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.3 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 1.1 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.4 GO:0051213 dioxygenase activity(GO:0051213)
0.0 0.8 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 0.3 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.4 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.9 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 0.5 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 0.1 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.0 0.1 GO:0017136 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.0 0.2 GO:0004575 sucrose alpha-glucosidase activity(GO:0004575)
0.0 0.2 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.9 GO:0016410 N-acyltransferase activity(GO:0016410)
0.0 1.0 GO:0019901 protein kinase binding(GO:0019901)
0.0 0.3 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.0 GO:0001047 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.0 0.2 GO:0019199 transmembrane receptor protein kinase activity(GO:0019199)
0.0 0.0 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.0 0.1 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.6 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 0.1 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.1 GO:0043495 protein anchor(GO:0043495)
0.0 3.2 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012)
0.0 0.3 GO:0008810 cellulase activity(GO:0008810)
0.0 0.1 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.2 GO:0004864 protein phosphatase inhibitor activity(GO:0004864) phosphatase inhibitor activity(GO:0019212)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.5 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins
0.2 0.6 PID IL12 2PATHWAY IL12-mediated signaling events
0.1 0.3 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.4 PID CDC42 PATHWAY CDC42 signaling events
0.0 0.1 PID AVB3 INTEGRIN PATHWAY Integrins in angiogenesis
0.0 0.1 SA G1 AND S PHASES Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition.
0.0 0.2 PID ATM PATHWAY ATM pathway
0.0 0.2 PID FANCONI PATHWAY Fanconi anemia pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.1 1.0 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.1 0.6 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.1 0.1 REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE Genes involved in Synthesis of PIPs at the Golgi membrane
0.1 0.7 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.1 0.3 REACTOME BIOLOGICAL OXIDATIONS Genes involved in Biological oxidations
0.1 0.3 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.2 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.0 0.4 REACTOME MEIOSIS Genes involved in Meiosis
0.0 0.3 REACTOME TRANSCRIPTION Genes involved in Transcription
0.0 0.1 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.0 0.1 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.0 0.1 REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS Genes involved in Glycerophospholipid biosynthesis