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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G38470
Z-value: 1.68
Transcription factors associated with AT2G38470
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G38470
|
AT2G38470 | WRKY DNA-binding protein 33 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY33 | arTal_v1_Chr2_+_16108235_16108235 | 0.39 | 1.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_23308680_23308680 Show fit | 3.64 |
AT5G57560.1
|
Xyloglucan endotransglucosylase/hydrolase family protein |
|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 3.24 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.78 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 2.63 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 2.53 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr1_+_6697874_6697874 Show fit | 2.50 |
AT1G19380.1
|
sugar, putative (DUF1195) |
|
| arTal_v1_Chr5_-_14566439_14566439 Show fit | 2.47 |
AT5G36925.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_11005638_11005638 Show fit | 2.45 |
AT3G29000.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr2_-_10454591_10454593 Show fit | 2.38 |
AT2G24600.2
AT2G24600.3 AT2G24600.4 AT2G24600.1 |
Ankyrin repeat family protein |
|
| arTal_v1_Chr1_-_21057577_21057577 Show fit | 2.35 |
AT1G56240.1
|
phloem protein 2-B13 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G38470
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 37.3 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 28.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 6.4 | GO:0009814 | defense response, incompatible interaction(GO:0009814) |
| 0.2 | 5.5 | GO:0010193 | response to ozone(GO:0010193) |
| 0.3 | 4.4 | GO:0009554 | megasporogenesis(GO:0009554) |
| 0.4 | 4.3 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.3 | 4.1 | GO:0080086 | stamen filament development(GO:0080086) |
| 0.1 | 4.1 | GO:0009875 | pollen-pistil interaction(GO:0009875) |
| 0.2 | 3.7 | GO:0006857 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
| 0.0 | 3.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 34.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 6.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 6.0 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 5.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 3.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.0 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 3.0 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.2 | 1.8 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.6 | 1.7 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.1 | 1.6 | GO:0005801 | cis-Golgi network(GO:0005801) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.0 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.0 | 7.4 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 5.9 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 5.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 4.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 4.4 | GO:0001012 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.1 | 4.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.0 | 3.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.3 | 3.5 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.0 | 3.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 1.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 1.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.2 | 0.7 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.2 | 0.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.5 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.0 | 0.2 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.1 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |
| 0.0 | 0.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |