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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G37590
Z-value: 0.60
Transcription factors associated with AT2G37590
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G37590
|
AT2G37590 | DNA binding with one finger 2.4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DOF2.4 | arTal_v1_Chr2_+_15769086_15769086 | 0.26 | 3.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 0.98 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 0.90 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 0.88 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 0.87 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr4_-_7417873_7417873 Show fit | 0.80 |
AT4G12510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 0.78 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 0.77 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 0.76 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 0.72 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 0.71 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G37590
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 4.8 | GO:0010410 | hemicellulose metabolic process(GO:0010410) |
| 0.1 | 2.9 | GO:0030091 | protein repair(GO:0030091) |
| 0.0 | 2.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.5 | 1.8 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 1.8 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 1.5 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 1.5 | GO:0010311 | lateral root formation(GO:0010311) |
| 0.1 | 1.4 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.0 | 1.3 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 2.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 1.8 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 1.7 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 1.4 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 0.8 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 0.7 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.1 | 0.7 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.5 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.0 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 2.4 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.0 | 1.9 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 1.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 1.7 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.2 | 1.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 1.5 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 1.2 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.1 | 1.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.4 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.4 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 0.1 | 0.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.2 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.2 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.2 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.0 | 0.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |