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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G36270

Z-value: 1.04

Transcription factors associated with AT2G36270

Gene Symbol Gene ID Gene Info
AT2G36270
AT2G36270 Basic-leucine zipper (bZIP) transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ABI5arTal_v1_Chr2_-_15206660_15206660-0.478.7e-02Click!

Activity profile of AT2G36270 motif

Sorted Z-values of AT2G36270 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_6130025 1.43 AT1G17810.1
BETA-TIP
beta-tonoplast intrinsic protein
Chr1_+_12851983 1.42 AT1G35140.1
PHI-1
Phosphate-responsive 1 family protein
Chr1_+_1244947 1.25 AT1G04560.1
AT1G04560
AWPM-19-like family protein
Chr2_-_16780368 1.04 AT2G40170.1
GEA6
Stress induced protein
Chr2_+_19568464 1.04 AT2G47770.1
TSPO
TSPO(outer membrane tryptophan-rich sensory protein)-like protein
Chr1_-_2747936 0.94 AT1G08630.6
AT1G08630.7
AT1G08630.5
AT1G08630.2
THA1
threonine aldolase 1
Chr1_+_20458952 0.93 AT1G54870.2
AT1G54870.1
AT1G54870
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_15230008 0.92 AT4G31380.1
FLP1
flowering-promoting factor-like protein
Chr4_+_12686459 0.89 AT4G24570.1
DIC2
dicarboxylate carrier 2
Chr3_-_2130451 0.87 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
Chr1_+_18542061 0.87 AT1G50040.1
AT1G50040
formin-like protein, putative (DUF1005)
Chr2_+_19469571 0.86 AT2G47440.2
AT2G47440.1
AT2G47440
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_14863412 0.85 AT2G35300.1
LEA18
Late embryogenesis abundant protein, group 1 protein
Chr2_+_13677986 0.85 AT2G32210.3
AT2G32210.2
AT2G32210.1
AT2G32210
cysteine-rich/transmembrane domain A-like protein
Chr1_+_17780429 0.84 AT1G48130.1
PER1
1-cysteine peroxiredoxin 1
Chr3_-_6000447 0.82 AT3G17520.1
AT3G17520
Late embryogenesis abundant protein (LEA) family protein
Chr4_+_17524461 0.82 AT4G37240.1
AT4G37240
HTH-type transcriptional regulator
Chr5_+_16441655 0.81 AT5G41080.1
GDPD2
PLC-like phosphodiesterases superfamily protein
Chr5_+_16441808 0.81 AT5G41080.2
GDPD2
PLC-like phosphodiesterases superfamily protein
Chr3_-_5310988 0.80 AT3G15670.1
AT3G15670
Late embryogenesis abundant protein (LEA) family protein
Chr3_+_18941925 0.80 AT3G50980.1
XERO1
dehydrin xero 1
Chr5_-_18506382 0.80 AT5G45630.1
AT5G45630
senescence regulator (Protein of unknown function, DUF584)
Chr4_-_16168711 0.80 AT4G33660.1
AT4G33660
cysteine-rich TM module stress tolerance protein
Chr1_-_16838562 0.78 AT1G44350.1
ILL6
IAA-amino acid hydrolase ILR1-like 6
Chr5_+_1568694 0.77 AT5G05290.1
EXPA2
expansin A2
Chr2_+_15859204 0.76 AT2G37870.1
AT2G37870
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_-_18401339 0.76 AT2G44578.1
AT2G44578
RING/U-box superfamily protein
Chr2_-_16244531 0.76 AT2G38905.1
AT2G38905
Low temperature and salt responsive protein family
Chr5_+_24248920 0.76 AT5G60220.1
TET4
tetraspanin4
Chr4_-_17979740 0.74 AT4G38400.1
AT4G38401.1
EXLA2
AT4G38401
expansin-like A2
hypothetical protein
Chr1_+_4433605 0.73 AT1G12990.1
AT1G12990
beta-1,4-N-acetylglucosaminyltransferase family protein
Chr1_+_29178705 0.73 AT1G77640.1
AT1G77640
Integrase-type DNA-binding superfamily protein
Chr5_-_17758275 0.73 AT5G44120.2
AT5G44120.1
AT5G44120.3
CRA1
RmlC-like cupins superfamily protein
Chr1_+_22628264 0.72 AT1G61340.1
AT1G61340.2
FBS1
F-box family protein
Chr1_-_2746526 0.71 AT1G08630.4
THA1
threonine aldolase 1
Chr1_+_6463849 0.70 AT1G18740.1
AT1G18740
ROH1, putative (DUF793)
Chr1_-_2746740 0.70 AT1G08630.3
THA1
threonine aldolase 1
Chr1_+_26400694 0.69 AT1G70090.1
AT1G70090.2
LGT8
glucosyl transferase family 8
Chr3_+_5692607 0.69 AT3G16720.1
ATL2
TOXICOS EN LEVADURA 2
Chr5_-_17331646 0.69 AT5G43170.1
ZF3
zinc-finger protein 3
Chr4_-_14883583 0.68 AT4G30440.1
GAE1
UDP-D-glucuronate 4-epimerase 1
Chr1_-_2747243 0.68 AT1G08630.1
THA1
threonine aldolase 1
Chr5_-_20940895 0.68 AT5G51550.1
EXL3
EXORDIUM like 3
Chr4_-_9754161 0.67 AT4G17490.1
ERF6
ethylene responsive element binding factor 6
Chr5_+_2680401 0.67 AT5G08330.1
TCP11
TCP family transcription factor
Chr1_+_19619724 0.67 AT1G52690.2
AT1G52690.1
LEA7
Late embryogenesis abundant protein (LEA) family protein
Chr4_+_18519599 0.67 AT4G39940.1
AKN2
APS-kinase 2
Chr2_-_10267607 0.66 AT2G24150.1
HHP3
heptahelical protein 3
Chr2_-_17115047 0.66 AT2G41010.1
CAMBP25
calmodulin (CAM)-binding protein of 25 kDa
Chr5_+_14912659 0.66 AT5G37540.1
AT5G37540
Eukaryotic aspartyl protease family protein
Chr4_-_12886695 0.66 AT4G25100.1
AT4G25100.3
AT4G25100.4
FSD1
Fe superoxide dismutase 1
Chr2_-_10267405 0.66 AT2G24150.2
HHP3
heptahelical protein 3
Chr5_+_5718498 0.66 AT5G17350.1
AT5G17350
hypothetical protein
Chr1_+_852151 0.65 AT1G03440.1
AT1G03440
Leucine-rich repeat (LRR) family protein
Chr1_-_18430497 0.64 AT1G49780.1
PUB26
plant U-box 26
Chr3_+_23201032 0.64 AT3G62720.2
AT3G62720.1
XT1
xylosyltransferase 1
Chr2_-_16563441 0.64 AT2G39710.1
AT2G39710
Eukaryotic aspartyl protease family protein
Chr1_-_9753952 0.64 AT1G27990.1
AT1G27990
transmembrane protein
Chr4_+_14087556 0.64 AT4G28520.1
AT4G28520.2
AT4G28520.4
AT4G28520.5
AT4G28520.3
CRU3
cruciferin 3
Chr4_-_947075 0.64 AT4G02130.2
AT4G02130.3
GATL6
galacturonosyltransferase 6
Chr4_+_160643 0.63 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr3_+_512220 0.63 AT3G02480.1
AT3G02480
Late embryogenesis abundant protein (LEA) family protein
Chr3_-_222827 0.62 AT3G01570.1
AT3G01570
Oleosin family protein
Chr1_+_2274926 0.62 AT1G07400.1
AT1G07400
HSP20-like chaperones superfamily protein
Chr1_-_4970311 0.61 AT1G14520.1
AT1G14520.3
AT1G14520.4
MIOX1
myo-inositol oxygenase 1
Chr4_-_947249 0.61 AT4G02130.1
GATL6
galacturonosyltransferase 6
Chr5_-_23992908 0.60 AT5G59520.1
ZIP2
ZRT/IRT-like protein 2
Chr2_+_11809279 0.60 AT2G27690.1
CYP94C1
cytochrome P450, family 94, subfamily C, polypeptide 1
Chr1_-_3481041 0.60 AT1G10550.1
XTH33
xyloglucan:xyloglucosyl transferase 33
Chr4_+_10372658 0.59 AT4G18940.1
AT4G18940
RNA ligase/cyclic nucleotide phosphodiesterase family protein
Chr1_-_20967162 0.59 AT1G56060.2
AT1G56060.1
AT1G56060
cysteine-rich/transmembrane domain protein B
Chr1_-_7040231 0.59 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr1_-_59215 0.58 AT1G01120.1
KCS1
3-ketoacyl-CoA synthase 1
Chr5_-_3517035 0.58 AT5G11070.1
AT5G11070
hypothetical protein
Chr1_+_7238693 0.58 AT1G20823.1
AT1G20823
RING/U-box superfamily protein
Chr3_-_22375822 0.58 AT3G60540.3
AT3G60540.1
AT3G60540.2
AT3G60540
Preprotein translocase Sec, Sec61-beta subunit protein
Chr4_-_12886902 0.57 AT4G25100.2
AT4G25100.5
FSD1
Fe superoxide dismutase 1
Chr2_+_10072057 0.57 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr1_-_4855287 0.57 AT1G14200.1
AT1G14200
RING/U-box superfamily protein
Chr3_+_21621994 0.57 AT3G58450.2
AT3G58450.1
AT3G58450
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr4_+_1415953 0.56 AT4G03210.2
XTH9
xyloglucan endotransglucosylase/hydrolase 9
Chr3_+_5121303 0.56 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
Chr4_+_1415617 0.55 AT4G03210.1
XTH9
xyloglucan endotransglucosylase/hydrolase 9
Chr3_+_10255906 0.55 AT3G27690.2
AT3G27690.1
LHCB2.3
photosystem II light harvesting complex protein 2.3
Chr5_+_25784404 0.54 AT5G64510.1
TIN1
tunicamycin induced protein
Chr5_-_4939207 0.54 AT5G15210.1
HB30
homeobox protein 30
Chr4_+_17263564 0.54 AT4G36600.2
AT4G36600.1
AT4G36600
Late embryogenesis abundant (LEA) protein
Chr1_-_105330 0.54 AT1G01250.1
AT1G01250
Integrase-type DNA-binding superfamily protein
Chr2_-_19440355 0.54 AT2G47370.2
AT2G47370.1
AT2G47370
Calcium-dependent phosphotriesterase superfamily protein
Chr2_-_19512728 0.54 AT2G47560.1
AT2G47560
RING/U-box superfamily protein
Chr2_-_17716912 0.53 AT2G42560.1
AT2G42560
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Chr4_+_13812989 0.53 AT4G27657.1
AT4G27657
hypothetical protein
Chr1_+_22073352 0.53 AT1G59970.1
AT1G59970
Matrixin family protein
Chr1_+_15081952 0.52 AT1G40104.1
AT1G40104
hypothetical protein
Chr1_+_7289973 0.52 AT1G20925.1
AT1G20925
Auxin efflux carrier family protein
Chr5_-_23896702 0.52 AT5G59220.2
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr5_-_16236 0.52 AT5G01040.1
LAC8
laccase 8
Chr3_-_2264721 0.52 AT3G07150.1
AT3G07150
amino acid-ligase
Chr3_+_20296416 0.52 AT3G54810.1
BME3
Plant-specific GATA-type zinc finger transcription factor family protein
Chr2_-_17837618 0.52 AT2G42870.1
PAR1
phy rapidly regulated 1
Chr5_-_26519242 0.52 AT5G66400.2
RAB18
Dehydrin family protein
Chr4_-_17777445 0.52 AT4G37800.1
XTH7
xyloglucan endotransglucosylase/hydrolase 7
Chr1_+_30370474 0.52 AT1G80820.1
AT1G80820.2
CCR2
cinnamoyl coa reductase
Chr5_-_26456154 0.52 AT5G66200.1
ARO2
armadillo repeat only 2
Chr2_+_13647699 0.52 AT2G32100.1
OFP16
ovate family protein 16
Chr3_+_20296130 0.51 AT3G54810.2
BME3
Plant-specific GATA-type zinc finger transcription factor family protein
Chr2_-_15846051 0.51 AT2G37810.1
AT2G37810
Cysteine/Histidine-rich C1 domain family protein
Chr5_-_23896939 0.51 AT5G59220.1
HAI1
PP2C protein (Clade A protein phosphatases type 2C)
Chr4_+_17515042 0.51 AT4G37220.1
AT4G37220
Cold acclimation protein WCOR413 family
Chr3_+_23282583 0.51 AT3G62990.1
AT3G62990
myelin transcription factor-like protein
Chr1_-_25670345 0.51 AT1G68460.1
IPT1
isopentenyltransferase 1
Chr3_-_10358281 0.51 AT3G27910.1
AT3G27910
Galactose oxidase/kelch repeat superfamily protein
Chr5_-_4986377 0.51 AT5G15350.1
ENODL17
early nodulin-like protein 17
Chr3_+_18029659 0.51 AT3G48660.1
AT3G48660
transmembrane protein, putative (DUF 3339)
Chr5_-_507244 0.50 AT5G02380.1
MT2B
metallothionein 2B
Chr2_-_18914739 0.50 AT2G45970.1
CYP86A8
cytochrome P450, family 86, subfamily A, polypeptide 8
Chr1_+_4934120 0.50 AT1G14430.1
AT1G14430
glyoxal oxidase-related protein
Chr2_+_19375985 0.50 AT2G47190.1
MYB2
myb domain protein 2
Chr1_-_958383 0.50 AT1G03800.1
ERF10
ERF domain protein 10
Chr3_-_13893141 0.50 AT3G33118.1
AT3G33118

Chr2_-_9564850 0.50 AT2G22500.1
UCP5
uncoupling protein 5
Chr5_-_26519447 0.50 AT5G66400.1
RAB18
Dehydrin family protein
Chr1_-_3764483 0.49 AT1G11230.2
AT1G11230.1
AT1G11230
transmembrane protein, putative (DUF761)
Chr3_+_3698658 0.49 AT3G11700.1
FLA18
FASCICLIN-like arabinogalactan protein 18 precursor
Chr1_+_4298666 0.49 AT1G12630.1
AT1G12630
Integrase-type DNA-binding superfamily protein
Chr4_+_12900430 0.49 AT4G25140.1
OLEO1
oleosin 1
Chr4_+_13297695 0.49 AT4G26260.1
AT4G26260.2
MIOX4
myo-inositol oxygenase 4
Chr3_+_18481027 0.49 AT3G49820.1
AT3G49820
hypothetical protein
Chr5_-_3402389 0.49 AT5G10760.1
AT5G10760
Eukaryotic aspartyl protease family protein
Chr3_-_15953346 0.49 AT3G44260.1
CAF1a
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr4_-_13460105 0.48 AT4G26690.1
SHV3
PLC-like phosphodiesterase family protein
Chr1_-_7989217 0.48 AT1G22600.1
AT1G22600
Late embryogenesis abundant protein (LEA) family protein
Chr3_+_21680027 0.48 AT3G58620.1
AT3G58620.2
TTL4
tetratricopetide-repeat thioredoxin-like 4
Chr5_+_208866 0.48 AT5G01530.1
LHCB4.1
light harvesting complex photosystem II
Chr3_-_19099849 0.48 AT3G51470.2
AT3G51470
Protein phosphatase 2C family protein
Chr5_-_3027114 0.48 AT5G09750.1
HEC3
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_14002069 0.48 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
EXPB3
expansin B3
Chr4_-_13069762 0.47 AT4G25620.1
AT4G25620
hydroxyproline-rich glycoprotein family protein
Chr1_+_4899045 0.47 AT1G14345.1
AT1G14345
NAD(P)-linked oxidoreductase superfamily protein
Chr5_-_1081096 0.47 AT5G04010.1
AT5G04010
F-box family protein
Chr1_+_739544 0.47 AT1G03090.2
AT1G03090.1
MCCA
methylcrotonyl-CoA carboxylase alpha chain
Chr4_-_18077369 0.47 AT4G38700.1
AT4G38700
Disease resistance-responsive (dirigent-like protein) family protein
Chr1_+_8922416 0.47 AT1G25425.1
CLE43
CLAVATA3/ESR-RELATED 43
Chr5_-_7026533 0.47 AT5G20740.1
AT5G20740
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_+_11228187 0.47 AT4G21020.1
AT4G21020
Late embryogenesis abundant protein (LEA) family protein
Chr5_-_25029933 0.47 AT5G62320.1
MYB99
myb domain protein 99
Chr5_-_7026753 0.47 AT5G20740.2
AT5G20740
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_+_5644593 0.46 AT3G16570.1
AT3G16570.2
AT3G16570.3
RALF23
rapid alkalinization factor 23
Chr3_-_6491429 0.46 AT3G18830.1
PMT5
polyol/monosaccharide transporter 5
Chr2_-_8045008 0.46 AT2G18540.1
AT2G18540.2
AT2G18540
RmlC-like cupins superfamily protein
Chr1_-_4970007 0.45 AT1G14520.2
MIOX1
myo-inositol oxygenase 1
Chr1_-_22595338 0.45 AT1G61260.1
AT1G61260
cotton fiber (DUF761)
Chr2_-_7768040 0.45 AT2G17880.1
AT2G17880
Chaperone DnaJ-domain superfamily protein
Chr5_-_19299174 0.45 AT5G47590.1
AT5G47590.2
AT5G47590
Heat shock protein HSP20/alpha crystallin family
Chr4_+_13275200 0.45 AT4G26200.1
ACS7
1-amino-cyclopropane-1-carboxylate synthase 7
Chr5_-_442187 0.45 AT5G02220.1
AT5G02220
cyclin-dependent kinase inhibitor
Chr4_-_11623797 0.45 AT4G21903.2
AT4G21903.1
AT4G21903
MATE efflux family protein
Chr5_+_9683988 0.45 AT5G27420.1
CNI1
carbon/nitrogen insensitive 1
Chr5_-_26607012 0.45 AT5G66650.1
AT5G66650
calcium uniporter (DUF607)
Chr4_+_5792137 0.44 AT4G09030.1
AGP10
arabinogalactan protein 10
Chr2_+_6213972 0.44 AT2G14560.2
AT2G14560.1
LURP1
LURP-one-like protein (DUF567)
Chr1_-_20703460 0.44 AT1G55440.1
AT1G55440
Cysteine/Histidine-rich C1 domain family protein
Chr4_-_14665583 0.44 AT4G29980.1
AT4G29980
fasciclin-like arabinogalactan protein
Chr3_-_12366047 0.44 AT3G30737.1
AT3G30737

Chr1_+_28163344 0.44 AT1G75000.1
AT1G75000
GNS1/SUR4 membrane protein family
Chr2_+_3618058 0.44 AT2G08986.1
AT2G08986
hypothetical protein
Chr5_-_3845711 0.44 AT5G11930.1
AT5G11930
Thioredoxin superfamily protein
Chr3_+_19569256 0.44 AT3G52800.1
AT3G52800.2
AT3G52800
A20/AN1-like zinc finger family protein
Chr1_-_8175819 0.44 AT1G23070.1
AT1G23070
organic solute transporter ostalpha protein (DUF300)
Chr3_-_5254458 0.44 AT3G15530.2
AT3G15530.1
AT3G15530
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_-_15824538 0.43 AT2G37730.1
AT2G37730
glycosyltransferase (DUF604)
Chr4_-_16255760 0.43 AT4G33905.1
AT4G33905
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Chr2_+_19008175 0.43 AT2G46300.1
AT2G46300
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_+_280674 0.43 AT5G01740.1
AT5G01740
Nuclear transport factor 2 (NTF2) family protein
Chr5_-_14194096 0.43 AT5G36100.1
AT5G36100.2
AT5G36100
transmembrane protein
Chr1_-_7902427 0.43 AT1G22380.1
UGT85A3
UDP-glucosyl transferase 85A3
Chr5_+_11615250 0.43 AT5G30500.2
AT5G30500.1
GolS10
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_-_9207125 0.43 AT2G21490.1
LEA
dehydrin LEA
Chr3_-_4834015 0.43 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
Chr1_-_3272110 0.43 AT1G10020.1
AT1G10020
formin-like protein (DUF1005)
Chr5_+_22716917 0.43 AT5G56100.1
AT5G56100
glycine-rich protein / oleosin
Chr3_+_22738353 0.43 AT3G61450.2
AT3G61450.4
AT3G61450.3
AT3G61450.6
AT3G61450.5
AT3G61450.1
SYP73
syntaxin of plants 73
Chr2_-_832619 0.43 AT2G02860.2
AT2G02860.1
SUT2
sucrose transporter 2
Chr2_+_16049918 0.43 AT2G38310.1
PYL4
PYR1-like 4
Chr2_-_16725774 0.43 AT2G40050.2
AT2G40050.1
AT2G40050
Cysteine/Histidine-rich C1 domain family protein
Chr1_-_7469995 0.43 AT1G21326.1
AT1G21326
VQ motif-containing protein
Chr4_-_15459781 0.43 AT4G31960.1
AT4G31960
hypothetical protein
Chr2_+_19570040 0.43 AT2G47780.1
AT2G47780
Rubber elongation factor protein (REF)
Chr5_+_2112716 0.43 AT5G06820.1
SRF2
STRUBBELIG-receptor family 2
Chr2_+_6213617 0.42 AT2G14560.3
AT2G14560.4
LURP1
LURP-one-like protein (DUF567)
Chr3_+_22492811 0.42 AT3G60870.1
AHL18
AT-hook motif nuclear-localized protein 18
Chr3_+_8997370 0.42 AT3G24650.1
ABI3
AP2/B3-like transcriptional factor family protein
Chr5_+_1746548 0.42 AT5G05810.1
ATL43
RING/U-box superfamily protein
Chr1_-_4959529 0.42 AT1G14490.2
AT1G14490
Putative AT-hook DNA-binding family protein
Chr4_+_18576216 0.42 AT4G40070.1
AT4G40070
RING/U-box superfamily protein
Chr1_+_25053673 0.42 AT1G67100.1
LBD40
LOB domain-containing protein 40
Chr3_+_8992265 0.42 AT3G24640.1
AT3G24640
lyase
Chr4_-_17355891 0.42 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr1_+_7886323 0.42 AT1G22330.1
AT1G22330
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_5744636 0.42 AT1G16780.3
AT1G16780.2
VHP2%3B2
Inorganic H pyrophosphatase family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36270

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.7 GO:0015709 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.5 3.0 GO:0006567 threonine catabolic process(GO:0006567)
0.4 1.7 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.3 1.4 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.3 1.6 GO:0019310 inositol catabolic process(GO:0019310)
0.3 1.1 GO:0010500 transmitting tissue development(GO:0010500)
0.2 1.1 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
0.2 0.7 GO:0098740 pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
0.2 0.7 GO:0090207 regulation of triglyceride metabolic process(GO:0090207)
0.2 1.3 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.2 0.9 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.2 1.7 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.2 0.5 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.2 0.3 GO:0048833 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.2 0.7 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 0.9 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 2.7 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.1 1.4 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.1 0.8 GO:1990019 protein storage vacuole organization(GO:1990019)
0.1 0.4 GO:0033530 raffinose metabolic process(GO:0033530)
0.1 0.4 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.1 1.2 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.4 GO:0033477 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.1 0.8 GO:0006552 leucine catabolic process(GO:0006552)
0.1 0.3 GO:0033321 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.1 0.3 GO:0070150 mitochondrial glycyl-tRNA aminoacylation(GO:0070150)
0.1 0.4 GO:0090603 sieve element differentiation(GO:0090603)
0.1 0.8 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.1 0.8 GO:0097437 maintenance of seed dormancy(GO:0010231) maintenance of dormancy(GO:0097437)
0.1 0.8 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.1 0.3 GO:0016107 sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345)
0.1 0.3 GO:0046386 deoxyribonucleoside triphosphate catabolic process(GO:0009204) deoxyribose phosphate catabolic process(GO:0046386)
0.1 0.4 GO:0051320 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.1 0.3 GO:0070509 calcium ion import(GO:0070509)
0.1 0.8 GO:2000114 regulation of establishment of cell polarity(GO:2000114)
0.1 0.2 GO:2000082 regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.1 0.4 GO:0042549 photosystem II stabilization(GO:0042549)
0.1 0.4 GO:0046622 positive regulation of organ growth(GO:0046622)
0.1 0.4 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.1 0.4 GO:1900034 regulation of cellular response to heat(GO:1900034)
0.1 0.5 GO:0009187 cyclic nucleotide metabolic process(GO:0009187)
0.1 0.4 GO:0006569 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 1.5 GO:0009901 anther dehiscence(GO:0009901)
0.1 1.0 GO:0042372 phylloquinone biosynthetic process(GO:0042372) phylloquinone metabolic process(GO:0042374)
0.1 0.2 GO:1902000 homogentisate metabolic process(GO:1901999) homogentisate catabolic process(GO:1902000)
0.1 0.5 GO:0080117 secondary growth(GO:0080117)
0.1 0.4 GO:0070141 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.1 0.2 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.1 0.5 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.1 1.2 GO:0071451 removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451)
0.1 0.2 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.2 GO:0046505 sulfolipid metabolic process(GO:0046505) sulfolipid biosynthetic process(GO:0046506)
0.1 0.4 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.1 0.9 GO:1902183 regulation of shoot apical meristem development(GO:1902183)
0.1 0.1 GO:0070127 tRNA aminoacylation for mitochondrial protein translation(GO:0070127)
0.1 0.5 GO:0090059 protoxylem development(GO:0090059)
0.1 0.3 GO:0048480 stigma development(GO:0048480)
0.1 0.2 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.1 0.2 GO:0010351 lithium ion transport(GO:0010351)
0.1 0.4 GO:0000710 meiotic mismatch repair(GO:0000710)
0.1 0.3 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 2.4 GO:0016126 sterol biosynthetic process(GO:0016126)
0.1 0.3 GO:0050810 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.1 0.5 GO:0071249 cellular response to nitrate(GO:0071249)
0.1 1.7 GO:0010187 negative regulation of seed germination(GO:0010187)
0.1 0.3 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.1 0.6 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 0.2 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.1 0.2 GO:0032963 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.1 0.6 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.1 0.2 GO:2000692 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438) negative regulation of seed maturation(GO:2000692)
0.1 0.2 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.1 0.2 GO:0046499 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.1 0.4 GO:0048446 petal morphogenesis(GO:0048446)
0.1 0.3 GO:0010390 histone monoubiquitination(GO:0010390)
0.1 0.2 GO:0031023 microtubule organizing center organization(GO:0031023)
0.1 1.7 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.1 0.3 GO:0006449 regulation of translational termination(GO:0006449)
0.1 0.6 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.1 0.2 GO:0000730 DNA recombinase assembly(GO:0000730) strand invasion(GO:0042148)
0.1 0.2 GO:0010269 response to selenium ion(GO:0010269)
0.1 0.4 GO:0090057 root radial pattern formation(GO:0090057)
0.0 0.6 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.3 GO:0080148 negative regulation of response to water deprivation(GO:0080148)
0.0 0.4 GO:0006488 dolichol-linked oligosaccharide biosynthetic process(GO:0006488)
0.0 0.2 GO:0019323 pentose catabolic process(GO:0019323)
0.0 0.4 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.0 0.6 GO:0006949 syncytium formation(GO:0006949)
0.0 0.2 GO:0033386 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0 0.3 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.2 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.0 2.0 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.1 GO:0010541 acropetal auxin transport(GO:0010541)
0.0 0.5 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.0 0.3 GO:0000187 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.0 0.2 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.0 0.1 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.0 0.2 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.6 GO:0015770 sucrose transport(GO:0015770)
0.0 0.2 GO:0035725 sodium ion transmembrane transport(GO:0035725) sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.0 0.4 GO:0007143 female meiotic division(GO:0007143)
0.0 1.4 GO:0030433 ER-associated ubiquitin-dependent protein catabolic process(GO:0030433) ERAD pathway(GO:0036503)
0.0 0.1 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.1 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.0 0.1 GO:0080051 cutin transport(GO:0080051)
0.0 5.1 GO:0010200 response to chitin(GO:0010200)
0.0 2.3 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.1 GO:2000736 regulation of stem cell population maintenance(GO:2000036) regulation of stem cell differentiation(GO:2000736)
0.0 0.1 GO:0051289 protein homotetramerization(GO:0051289)
0.0 0.8 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.2 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.2 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.0 0.9 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.6 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.0 0.5 GO:0006574 valine catabolic process(GO:0006574)
0.0 0.1 GO:0046786 viral replication complex formation and maintenance(GO:0046786)
0.0 0.8 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.6 GO:0010337 regulation of salicylic acid metabolic process(GO:0010337)
0.0 0.4 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.0 0.5 GO:0052541 plant-type cell wall cellulose metabolic process(GO:0052541)
0.0 0.7 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 1.0 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.5 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.2 GO:2000014 regulation of endosperm development(GO:2000014)
0.0 0.9 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.4 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.0 0.3 GO:0001709 cell fate determination(GO:0001709)
0.0 0.1 GO:0010226 response to lithium ion(GO:0010226)
0.0 0.2 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.3 GO:0006560 proline metabolic process(GO:0006560)
0.0 0.3 GO:0009750 response to fructose(GO:0009750)
0.0 0.2 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.0 0.8 GO:0006506 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.0 0.1 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.0 0.1 GO:1901336 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.0 0.4 GO:0009098 leucine biosynthetic process(GO:0009098)
0.0 0.5 GO:0035265 organ growth(GO:0035265)
0.0 0.4 GO:0030497 fatty acid elongation(GO:0030497)
0.0 1.1 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 0.3 GO:0016553 base conversion or substitution editing(GO:0016553)
0.0 0.1 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.0 0.2 GO:0071588 chloroplast-nucleus signaling pathway(GO:0010019) hydrogen peroxide mediated signaling pathway(GO:0071588)
0.0 0.4 GO:0009556 microsporogenesis(GO:0009556)
0.0 0.1 GO:0006421 asparaginyl-tRNA aminoacylation(GO:0006421)
0.0 0.6 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.2 GO:0010152 pollen maturation(GO:0010152)
0.0 0.2 GO:0051262 protein tetramerization(GO:0051262)
0.0 0.2 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 0.1 GO:0030100 regulation of endocytosis(GO:0030100)
0.0 0.1 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.0 0.1 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.1 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.0 0.2 GO:0010358 leaf shaping(GO:0010358)
0.0 0.1 GO:0043981 histone H4-K5 acetylation(GO:0043981)
0.0 0.1 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.0 0.7 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.0 0.2 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.1 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.0 0.2 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.0 0.1 GO:0008300 isoprenoid catabolic process(GO:0008300)
0.0 0.2 GO:0015914 phospholipid transport(GO:0015914)
0.0 0.3 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.2 GO:0009649 entrainment of circadian clock(GO:0009649)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.1 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
0.0 0.1 GO:0046865 isoprenoid transport(GO:0046864) terpenoid transport(GO:0046865)
0.0 0.2 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.1 GO:0042770 signal transduction in response to DNA damage(GO:0042770)
0.0 0.1 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.0 0.2 GO:0016104 triterpenoid biosynthetic process(GO:0016104)
0.0 0.1 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.0 1.1 GO:0007267 cell-cell signaling(GO:0007267)
0.0 0.1 GO:0010222 stem vascular tissue pattern formation(GO:0010222)
0.0 0.2 GO:0080086 stamen filament development(GO:0080086)
0.0 1.1 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.0 0.1 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.0 0.1 GO:0048766 root hair initiation(GO:0048766)
0.0 0.5 GO:0022611 seed dormancy process(GO:0010162) dormancy process(GO:0022611)
0.0 0.1 GO:0019408 dolichol metabolic process(GO:0019348) dolichol biosynthetic process(GO:0019408)
0.0 0.1 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.0 0.1 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.4 GO:0046470 phosphatidylcholine metabolic process(GO:0046470)
0.0 0.1 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.0 0.5 GO:0010431 seed maturation(GO:0010431)
0.0 0.4 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 0.5 GO:0006098 pentose-phosphate shunt(GO:0006098)
0.0 0.2 GO:0070193 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.0 0.5 GO:0071805 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.0 0.1 GO:0048533 sporocyte differentiation(GO:0048533)
0.0 0.1 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.0 0.3 GO:0045493 xylan catabolic process(GO:0045493)
0.0 0.7 GO:0045292 mRNA cis splicing, via spliceosome(GO:0045292)
0.0 0.1 GO:0006661 phosphatidylinositol biosynthetic process(GO:0006661)
0.0 0.1 GO:0010508 positive regulation of autophagy(GO:0010508)
0.0 0.1 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.0 GO:0034764 positive regulation of transmembrane transport(GO:0034764)
0.0 0.3 GO:0010089 xylem development(GO:0010089)
0.0 0.1 GO:0034497 protein localization to pre-autophagosomal structure(GO:0034497)
0.0 0.7 GO:0010224 response to UV-B(GO:0010224)
0.0 0.3 GO:0042330 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.0 0.2 GO:0006189 'de novo' IMP biosynthetic process(GO:0006189)
0.0 0.2 GO:0009686 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.0 0.2 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.0 0.7 GO:0009627 systemic acquired resistance(GO:0009627)
0.0 0.1 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.0 0.1 GO:0015689 molybdate ion transport(GO:0015689)
0.0 1.1 GO:0043086 negative regulation of catalytic activity(GO:0043086)
0.0 0.1 GO:0006103 2-oxoglutarate metabolic process(GO:0006103)
0.0 0.3 GO:0008643 carbohydrate transport(GO:0008643)
0.0 0.1 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.0 0.1 GO:0070919 production of siRNA involved in chromatin silencing by small RNA(GO:0070919)
0.0 0.1 GO:0080119 ER body organization(GO:0080119)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0070382 exocytic vesicle(GO:0070382)
0.2 0.5 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.1 0.3 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.1 0.9 GO:0009517 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.1 0.3 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.1 0.3 GO:0000839 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.1 0.7 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.1 0.4 GO:0044545 NSL complex(GO:0044545)
0.1 0.4 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.1 0.5 GO:0009538 photosystem I reaction center(GO:0009538)
0.1 0.2 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.1 0.8 GO:0005801 cis-Golgi network(GO:0005801)
0.1 1.4 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.1 1.3 GO:0045177 apical part of cell(GO:0045177)
0.0 0.1 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0 0.3 GO:0043073 germ cell nucleus(GO:0043073)
0.0 0.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.1 GO:0009501 amyloplast(GO:0009501)
0.0 2.3 GO:0010287 plastoglobule(GO:0010287)
0.0 0.2 GO:0009522 photosystem I(GO:0009522)
0.0 0.3 GO:0031298 replication fork protection complex(GO:0031298)
0.0 1.0 GO:0005811 lipid particle(GO:0005811)
0.0 0.8 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.2 GO:0031379 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 0.1 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.0 0.1 GO:0010369 chromocenter(GO:0010369)
0.0 0.4 GO:0031304 intrinsic component of mitochondrial inner membrane(GO:0031304)
0.0 0.2 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.3 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.1 GO:0009897 external side of plasma membrane(GO:0009897)
0.0 0.2 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.1 GO:0000938 GARP complex(GO:0000938)
0.0 0.2 GO:0008180 COP9 signalosome(GO:0008180)
0.0 0.1 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.0 5.7 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.2 GO:0000427 plastid-encoded plastid RNA polymerase complex(GO:0000427)
0.0 0.1 GO:0032807 DNA ligase IV complex(GO:0032807)
0.0 0.1 GO:0030893 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0 0.2 GO:0035267 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.6 GO:0042644 chloroplast nucleoid(GO:0042644)
0.0 0.5 GO:0009521 photosystem(GO:0009521)
0.0 1.0 GO:0090406 pollen tube(GO:0090406)
0.0 0.5 GO:0071004 U2-type prespliceosome(GO:0071004) prespliceosome(GO:0071010)
0.0 0.0 GO:0000110 nucleotide-excision repair factor 1 complex(GO:0000110)
0.0 0.1 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.0 0.2 GO:0000124 SAGA complex(GO:0000124)
0.0 0.1 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.1 GO:0030870 Mre11 complex(GO:0030870)
0.0 0.1 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.0 0.0 GO:0030874 nucleolar chromatin(GO:0030874)
0.0 0.0 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.0 0.1 GO:0043076 megasporocyte nucleus(GO:0043076) polar nucleus(GO:0043078)
0.0 0.1 GO:0005720 nuclear heterochromatin(GO:0005720)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 3.0 GO:0008732 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.6 1.7 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.3 1.6 GO:0050113 inositol oxygenase activity(GO:0050113)
0.3 1.0 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.2 0.6 GO:0080106 3-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080102) 5-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080104) 7-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080106)
0.2 0.6 GO:0000249 C-22 sterol desaturase activity(GO:0000249)
0.2 2.5 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.2 1.2 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.2 0.3 GO:0052736 beta-glucanase activity(GO:0052736)
0.2 0.5 GO:0018685 alkane 1-monooxygenase activity(GO:0018685)
0.2 0.5 GO:0000248 C-5 sterol desaturase activity(GO:0000248)
0.2 0.5 GO:0015146 pentose transmembrane transporter activity(GO:0015146)
0.1 0.6 GO:0052739 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.1 3.7 GO:0016168 chlorophyll binding(GO:0016168)
0.1 0.4 GO:0004424 imidazoleglycerol-phosphate dehydratase activity(GO:0004424)
0.1 0.4 GO:0004557 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 0.5 GO:0004112 cyclic-nucleotide phosphodiesterase activity(GO:0004112) 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity(GO:0004113)
0.1 2.7 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 0.4 GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.1 0.9 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 0.4 GO:0000225 N-acetylglucosaminylphosphatidylinositol deacetylase activity(GO:0000225)
0.1 0.5 GO:0015245 fatty acid transporter activity(GO:0015245)
0.1 0.6 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.1 0.3 GO:0015292 uniporter activity(GO:0015292)
0.1 0.7 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 0.8 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 1.2 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.1 0.8 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.1 0.7 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.1 0.6 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
0.1 0.4 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.1 0.8 GO:0042299 lupeol synthase activity(GO:0042299)
0.1 0.4 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.1 0.5 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.1 0.4 GO:0019784 NEDD8-specific protease activity(GO:0019784)
0.1 0.4 GO:0003862 3-isopropylmalate dehydrogenase activity(GO:0003862)
0.1 0.8 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.1 3.1 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.1 0.4 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.1 0.3 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.1 0.8 GO:0051920 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.1 0.2 GO:0046524 sucrose-phosphate synthase activity(GO:0046524)
0.1 0.3 GO:0016649 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.1 2.3 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.4 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.1 0.3 GO:0010296 prenylcysteine methylesterase activity(GO:0010296)
0.1 0.6 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.1 0.3 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.1 0.2 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.1 0.2 GO:0035671 enone reductase activity(GO:0035671)
0.1 0.2 GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity(GO:0008963)
0.1 0.7 GO:0017048 Rho GTPase binding(GO:0017048)
0.1 0.2 GO:0008909 isochorismate synthase activity(GO:0008909)
0.1 0.6 GO:0046923 ER retention sequence binding(GO:0046923)
0.1 0.2 GO:0043812 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.1 1.1 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.1 0.2 GO:0004647 phosphoserine phosphatase activity(GO:0004647)
0.1 0.2 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.1 0.3 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.1 2.5 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 0.2 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.2 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.1 0.3 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.1 0.6 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.1 0.5 GO:0016421 CoA carboxylase activity(GO:0016421) ligase activity, forming carbon-carbon bonds(GO:0016885)
0.1 0.2 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.0 0.6 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.3 GO:0004449 isocitrate dehydrogenase (NAD+) activity(GO:0004449)
0.0 0.2 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.0 0.1 GO:0004828 serine-tRNA ligase activity(GO:0004828)
0.0 0.3 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.3 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.0 0.2 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.3 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.0 0.2 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.0 0.4 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.4 GO:0009922 fatty acid elongase activity(GO:0009922)
0.0 0.7 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)
0.0 0.9 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 0.4 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.5 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.2 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.1 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.1 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.2 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 0.4 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.2 GO:0000150 recombinase activity(GO:0000150)
0.0 1.5 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.2 GO:0008430 selenium binding(GO:0008430)
0.0 0.2 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.2 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 1.0 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.3 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.0 0.3 GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165)
0.0 0.5 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.0 0.5 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.1 GO:0052594 tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596)
0.0 0.3 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.0 0.2 GO:0004096 catalase activity(GO:0004096)
0.0 0.1 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.0 0.3 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 1.8 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 1.3 GO:0070001 aspartic-type peptidase activity(GO:0070001)
0.0 0.1 GO:0004816 asparagine-tRNA ligase activity(GO:0004816)
0.0 0.5 GO:0070063 RNA polymerase binding(GO:0070063)
0.0 0.7 GO:0008810 cellulase activity(GO:0008810)
0.0 0.2 GO:0004860 protein kinase inhibitor activity(GO:0004860)
0.0 0.4 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.7 GO:0005179 hormone activity(GO:0005179)
0.0 0.4 GO:0035064 methylated histone binding(GO:0035064)
0.0 0.4 GO:0051119 sugar transmembrane transporter activity(GO:0051119)
0.0 0.4 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 2.3 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 0.1 GO:0080118 brassinosteroid sulfotransferase activity(GO:0080118)
0.0 0.8 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 0.1 GO:0008883 glutamyl-tRNA reductase activity(GO:0008883)
0.0 0.2 GO:0005496 steroid binding(GO:0005496)
0.0 0.1 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.0 0.3 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.6 GO:0044390 ubiquitin-like protein conjugating enzyme binding(GO:0044390)
0.0 0.4 GO:0010333 terpene synthase activity(GO:0010333)
0.0 0.4 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.3 GO:0070628 proteasome binding(GO:0070628)
0.0 0.1 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.2 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.1 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.8 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.0 0.1 GO:0010428 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.0 0.7 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.1 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.0 3.6 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012)
0.0 1.7 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.1 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.1 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.1 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.0 0.1 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.0 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.0 0.2 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.0 0.2 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 0.1 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.0 0.2 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.6 GO:0015079 potassium ion transmembrane transporter activity(GO:0015079)
0.0 0.2 GO:0005504 fatty acid binding(GO:0005504)
0.0 1.1 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.1 GO:0003987 acetate-CoA ligase activity(GO:0003987)
0.0 0.1 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.1 0.1 PID PI3KCI PATHWAY Class I PI3K signaling events
0.1 0.2 PID ARF 3PATHWAY Arf1 pathway
0.0 0.4 ST FAS SIGNALING PATHWAY Fas Signaling Pathway
0.0 0.1 PID MYC PATHWAY C-MYC pathway
0.0 0.1 SA G1 AND S PHASES Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition.
0.0 0.1 PID HES HEY PATHWAY Notch-mediated HES/HEY network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.1 0.8 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.1 0.2 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.1 0.2 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.1 0.1 REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE Genes involved in Synthesis of PIPs at the Golgi membrane
0.0 0.4 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.0 0.3 REACTOME NEUROTRANSMITTER RELEASE CYCLE Genes involved in Neurotransmitter Release Cycle
0.0 0.5 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination
0.0 0.4 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism
0.0 0.1 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System
0.0 0.1 REACTOME REGULATION OF INSULIN SECRETION Genes involved in Regulation of Insulin Secretion
0.0 0.0 REACTOME FORMATION OF INCISION COMPLEX IN GG NER Genes involved in Formation of incision complex in GG-NER