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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G36270
Z-value: 1.04
Transcription factors associated with AT2G36270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G36270
|
AT2G36270 | Basic-leucine zipper (bZIP) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ABI5 | arTal_v1_Chr2_-_15206660_15206660 | -0.47 | 8.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 1.43 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 1.42 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 1.25 |
AT1G04560.1
|
AWPM-19-like family protein |
|
| arTal_v1_Chr2_-_16780368_16780368 Show fit | 1.04 |
AT2G40170.1
|
Stress induced protein |
|
| arTal_v1_Chr2_+_19568464_19568464 Show fit | 1.04 |
AT2G47770.1
|
TSPO(outer membrane tryptophan-rich sensory protein)-like protein |
|
| arTal_v1_Chr1_-_2747936_2747967 Show fit | 0.94 |
AT1G08630.6
AT1G08630.7 AT1G08630.5 AT1G08630.2 |
threonine aldolase 1 |
|
| arTal_v1_Chr1_+_20458952_20459006 Show fit | 0.93 |
AT1G54870.2
AT1G54870.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_15230008_15230008 Show fit | 0.92 |
AT4G31380.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 0.89 |
AT4G24570.1
|
dicarboxylate carrier 2 |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 0.87 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G36270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.5 | 3.0 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 2.7 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 2.4 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 2.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 2.0 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.6 | 1.7 | GO:0015709 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.4 | 1.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.2 | 1.7 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
| 0.1 | 1.7 | GO:0010187 | negative regulation of seed germination(GO:0010187) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 1.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 1.3 | GO:0045177 | apical part of cell(GO:0045177) |
| 0.0 | 1.0 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 1.0 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 0.9 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 0.8 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 0.8 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.2 | 0.7 | GO:0070382 | exocytic vesicle(GO:0070382) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 3.6 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.1 | 3.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.6 | 3.0 | GO:0008732 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 2.7 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.2 | 2.5 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.1 | 2.5 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 2.3 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 2.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 1.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 0.4 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.1 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.1 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.5 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.4 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.3 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.1 | 0.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |