ISMARA results: AT2G36010

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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G36010_AT5G02470

Z-value: 0.99

Transcription factors associated with AT2G36010_AT5G02470

Gene Symbol	Gene ID	Gene Info
AT2G36010 TAIR	AT2G36010	E2F transcription factor 3
AT5G02470 TAIR	AT5G02470	Transcription factor DP

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
E2F3	arTal_v1_Chr2_+_15119516_15119589	0.47	9.0e-02	Click!
DPA	arTal_v1_Chr5_-_544715_544715	0.34	2.4e-01	Click!

Activity profile of AT2G36010_AT5G02470 motif

Sorted Z-values of AT2G36010_AT5G02470 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr3_-_9981620_9981620 Show fit	1.29	AT3G27060.1	TSO2 TAIR Show fit	Ferritin/ribonucleotide reductase-like family protein
arTal_v1_Chr1_+_2263037_2263037 Show fit	1.22	AT1G07370.1	PCNA1 TAIR Show fit	proliferating cellular nuclear antigen 1
arTal_v1_Chr1_+_9298670_9298670 Show fit	1.10	AT1G26840.1	ORC6 TAIR Show fit	origin recognition complex protein 6
arTal_v1_Chr2_-_12651753_12651753 Show fit	1.07	AT2G29570.1	PCNA2 TAIR Show fit	proliferating cell nuclear antigen 2
arTal_v1_Chr2_+_9293261_9293261 Show fit	0.98	AT2G21790.1	RNR1 TAIR Show fit	ribonucleotide reductase 1
arTal_v1_Chr5_+_16760846_16760846 Show fit	0.85	AT5G41880.1	POLA3 TAIR Show fit	DNA primase POLA3
arTal_v1_Chr3_-_17288953_17289006 Show fit	0.84	AT3G46940.1 AT3G46940.2	DUT1 TAIR Show fit	DUTP-PYROPHOSPHATASE-LIKE 1
arTal_v1_Chr4_-_7462447_7462447 Show fit	0.83	AT4G12620.1	ORC1B TAIR Show fit	origin of replication complex 1B
arTal_v1_Chr3_+_9143916_9143916 Show fit	0.81	AT3G25100.1	CDC45 TAIR Show fit	cell division cycle 45
arTal_v1_Chr2_+_16934621_16934621 Show fit	0.79	AT2G40550.1	ETG1 TAIR Show fit	E2F target protein 1 (ETG1)

Showing 1 to 10 of 87 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36010_AT5G02470

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.9	GO:0006260	DNA replication(GO:0006260)
0.5	3.1	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)
0.4	2.6	GO:0006272	leading strand elongation(GO:0006272)
0.1	2.6	GO:0006270	DNA replication initiation(GO:0006270)
0.6	1.9	GO:2000045	regulation of G1/S transition of mitotic cell cycle(GO:2000045)
0.4	1.3	GO:1902315	cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
0.1	0.8	GO:0006336	DNA replication-independent nucleosome assembly(GO:0006336)
0.0	0.8	GO:0048544	recognition of pollen(GO:0048544)
0.2	0.7	GO:0010069	zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.1	0.7	GO:0006265	DNA topological change(GO:0006265)

Showing 1 to 10 of 25 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	2.1	GO:0042555	MCM complex(GO:0042555)
0.3	1.9	GO:0000808	origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.4	1.3	GO:0005658	alpha DNA polymerase:primase complex(GO:0005658)
0.4	1.1	GO:0005656	nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.1	0.8	GO:0005662	DNA replication factor A complex(GO:0005662)
0.1	0.6	GO:0001673	male germ cell nucleus(GO:0001673)
0.1	0.6	GO:0030892	nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0	0.6	GO:0048471	perinuclear region of cytoplasm(GO:0048471)
0.1	0.4	GO:0030896	checkpoint clamp complex(GO:0030896)
0.1	0.4	GO:0009330	DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)

Showing 1 to 10 of 18 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.6	GO:0003688	DNA replication origin binding(GO:0003688)
0.8	2.3	GO:0061731	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.2	1.1	GO:0001102	RNA polymerase II activating transcription factor binding(GO:0001102)
0.0	0.9	GO:0003899	DNA-directed RNA polymerase activity(GO:0003899)
0.1	0.8	GO:0047429	nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0	0.8	GO:0003697	single-stranded DNA binding(GO:0003697)
0.1	0.7	GO:0003886	DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.2	0.6	GO:0070182	DNA polymerase binding(GO:0070182)
0.0	0.6	GO:1901981	phosphatidylinositol phosphate binding(GO:1901981)
0.0	0.5	GO:0010485	H4 histone acetyltransferase activity(GO:0010485)

Showing 1 to 10 of 16 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.4	PID ATR PATHWAY	ATR signaling pathway
0.1	0.8	PID CMYB PATHWAY	C-MYB transcription factor network
0.0	0.3	PID ATM PATHWAY	ATM pathway

Showing 1 to 3 of 3 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	2.2	REACTOME UNWINDING OF DNA	Genes involved in Unwinding of DNA
0.3	1.4	REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION	Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.2	1.3	REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND	Genes involved in Processive synthesis on the lagging strand
0.1	0.6	REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE	Genes involved in Dopamine Neurotransmitter Release Cycle
0.0	0.3	REACTOME MEIOTIC RECOMBINATION	Genes involved in Meiotic Recombination
0.0	0.0	REACTOME ORC1 REMOVAL FROM CHROMATIN	Genes involved in Orc1 removal from chromatin

Showing 1 to 6 of 6 entries

Results for AT2G36010_AT5G02470

Z-value: 0.99

Transcription factors associated with AT2G36010_AT5G02470

Activity-expression correlation:

Activity profile of AT2G36010_AT5G02470 motif

Sorted Z-values of AT2G36010_AT5G02470 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36010_AT5G02470

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: