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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G36010_AT5G02470

Z-value: 0.99

Transcription factors associated with AT2G36010_AT5G02470

Gene Symbol Gene ID Gene Info
AT2G36010
AT2G36010 E2F transcription factor 3
AT5G02470
AT5G02470 Transcription factor DP

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
E2F3arTal_v1_Chr2_+_15119516_151195890.479.0e-02Click!
DPAarTal_v1_Chr5_-_544715_5447150.342.4e-01Click!

Activity profile of AT2G36010_AT5G02470 motif

Sorted Z-values of AT2G36010_AT5G02470 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_9981620 1.29 AT3G27060.1
TSO2
Ferritin/ribonucleotide reductase-like family protein
Chr1_+_2263037 1.22 AT1G07370.1
PCNA1
proliferating cellular nuclear antigen 1
Chr1_+_9298670 1.10 AT1G26840.1
ORC6
origin recognition complex protein 6
Chr2_-_12651753 1.07 AT2G29570.1
PCNA2
proliferating cell nuclear antigen 2
Chr2_+_9293261 0.98 AT2G21790.1
RNR1
ribonucleotide reductase 1
Chr5_+_16760846 0.85 AT5G41880.1
POLA3
DNA primase POLA3
Chr3_-_17288953 0.84 AT3G46940.1
AT3G46940.2
DUT1
DUTP-PYROPHOSPHATASE-LIKE 1
Chr4_-_7462447 0.83 AT4G12620.1
ORC1B
origin of replication complex 1B
Chr3_+_9143916 0.81 AT3G25100.1
CDC45
cell division cycle 45
Chr2_+_16934621 0.79 AT2G40550.1
ETG1
E2F target protein 1 (ETG1)
Chr3_-_654480 0.79 AT3G02920.3
AT3G02920.1
AT3G02920.2
RPA32B
Replication protein A, subunit RPA32
Chr5_-_967432 0.78 AT5G03700.1
AT5G03700
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr2_-_7130729 0.76 AT2G16440.1
MCM4
Minichromosome maintenance (MCM2/3/5) family protein
Chr3_+_20059671 0.72 AT3G54180.1
CDKB1%3B1
cyclin-dependent kinase B1;1
Chr2_-_13462431 0.64 AT2G31650.1
ATX1
homologue of trithorax
Chr2_+_13328862 0.63 AT2G31270.1
CDT1A
CDT1-like protein A
Chr4_-_15019771 0.62 AT4G30840.1
AT4G30840
Transducin/WD40 repeat-like superfamily protein
Chr3_+_14751280 0.61 AT3G42660.1
AT3G42660
transducin family protein / WD-40 repeat family protein
Chr3_+_21997052 0.59 AT3G59550.1
SYN3
Rad21/Rec8-like family protein
Chr3_+_5008676 0.58 AT3G14890.1
AT3G14890.2
AT3G14890
phosphoesterase
Chr3_-_20229214 0.56 AT3G54650.1
FBL17
RNI-like superfamily protein
Chr3_-_3919359 0.55 AT3G12280.1
RBR1
retinoblastoma-related 1
Chr3_-_3919170 0.55 AT3G12280.2
RBR1
retinoblastoma-related 1
Chr1_-_25208972 0.53 AT1G67320.1
AT1G67320.3
AT1G67320.2
EMB2813
DNA primase, large subunit family
Chr1_+_16970214 0.53 AT1G44900.2
AT1G44900.1
MCM2
minichromosome maintenance (MCM2/3/5) family protein
Chr1_+_30336097 0.49 AT1G80720.2
AT1G80720.1
AT1G80720
Mitochondrial glycoprotein family protein
Chr5_+_15208358 0.49 AT5G38110.1
ASF1B
anti- silencing function 1b
Chr1_-_26253687 0.41 AT1G69770.1
CMT3
chromomethylase 3
Chr2_-_10400802 0.41 AT2G24490.1
RPA2
replicon protein A2
Chr4_+_12408950 0.41 AT4G23860.3
AT4G23860.2
AT4G23860.1
AT4G23860
PHD finger protein-like protein
Chr2_-_10400498 0.40 AT2G24490.2
RPA2
replicon protein A2
Chr4_+_9871761 0.39 AT4G17760.2
AT4G17760.1
AT4G17760
PCNA domain-containing protein
Chr3_-_3346360 0.38 AT3G10690.1
GYRA
DNA GYRASE A
Chr3_+_611490 0.38 AT3G02820.2
AT3G02820.1
AT3G02820
zinc knuckle (CCHC-type) family protein
Chr1_-_1331163 0.37 AT1G04730.2
AT1G04730.1
AT1G04730.4
CTF18
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_-_7890355 0.36 AT5G23420.1
HMGB6
high-mobility group box 6
Chr5_-_6737496 0.35 AT5G19920.1
AT5G19920
Transducin/WD40 repeat-like superfamily protein
Chr1_+_11057105 0.34 AT1G31020.1
TO2
thioredoxin O2
Chr5_+_5474366 0.33 AT5G16690.2
AT5G16690.1
ORC3
origin recognition complex subunit 3
Chr5_+_25574419 0.32 AT5G63920.1
TOP3A
topoisomerase 3alpha
Chr1_+_24892340 0.31 AT1G66740.1
SGA2
ASF1 like histone chaperone
Chr3_+_10232242 0.31 AT3G27640.1
AT3G27640.2
AT3G27640
Transducin/WD40 repeat-like superfamily protein
Chr4_+_12409534 0.30 AT4G23860.4
AT4G23860
PHD finger protein-like protein
Chr1_-_18337513 0.29 AT1G49540.2
AT1G49540.1
ELP2
elongator protein 2
Chr5_+_26776953 0.29 AT5G67100.2
AT5G67100.1
ICU2
DNA-directed DNA polymerase
Chr5_+_2016566 0.28 AT5G06590.2
AT5G06590.1
AT5G06590
hypothetical protein
Chr5_-_22955739 0.27 AT5G56740.1
HAG2
histone acetyltransferase of the GNAT family 2
Chr5_-_7890180 0.27 AT5G23420.2
HMGB6
high-mobility group box 6
Chr5_+_19932114 0.27 AT5G49160.1
AT5G49160.2
MET1
methyltransferase 1
Chr5_+_9823513 0.26 AT5G27740.1
EMB2775
ATPase family associated with various cellular activities (AAA)
Chr5_-_22955352 0.24 AT5G56740.2
HAG2
histone acetyltransferase of the GNAT family 2
Chr5_+_25599514 0.24 AT5G63960.2
AT5G63960.1
AT5G63960
DNA polymerase delta subunit 1
Chr2_-_10621307 0.24 AT2G24970.1
AT2G24970
spindle/kinetochore-associated protein
Chr1_-_2232897 0.22 AT1G07270.2
AT1G07270.1
AT1G07270
Cell division control, Cdc6
Chr1_+_17052475 0.21 AT1G45110.1
AT1G45110
Tetrapyrrole (Corrin/Porphyrin) Methylase
Chr5_-_21463249 0.21 AT5G52910.1
AT5G52910.2
ATIM
timeless family protein
Chr2_-_19551171 0.20 AT2G47680.1
AT2G47680
zinc finger (CCCH type) helicase family protein
Chr1_-_2547946 0.19 AT1G08130.1
LIG1
DNA ligase 1
Chr1_+_30158923 0.19 AT1G80190.2
AT1G80190.3
AT1G80190.4
AT1G80190.1
AT1G80190.5
AT1G80190.6
PSF1
partner of SLD five 1
Chr2_+_801527 0.18 AT2G02810.1
UTR1
UDP-galactose transporter 1
Chr1_-_12122928 0.15 AT1G33420.2
AT1G33420
RING/FYVE/PHD zinc finger superfamily protein
Chr1_-_25348406 0.15 AT1G67630.1
POLA2
DNA polymerase alpha 2
Chr1_+_12746405 0.15 AT1G34770.1
AT1G34770.3
AT1G34770.2
AT1G34770.4
AT1G34770.5
AT1G34770.6
AT1G34770
melanoma-associated antigen G1-like protein
Chr1_+_4567935 0.14 AT1G13330.1
AHP2
Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP)
Chr1_-_7192794 0.14 AT1G20720.1
AT1G20720.2
AT1G20720
RAD3-like DNA-binding helicase protein
Chr3_+_3880908 0.14 AT3G12170.2
AT3G12170.1
AT3G12170
Chaperone DnaJ-domain superfamily protein
Chr5_-_6202166 0.14 AT5G18620.2
AT5G18620.1
CHR17
chromatin remodeling factor17
Chr1_-_12123576 0.13 AT1G33420.1
AT1G33420
RING/FYVE/PHD zinc finger superfamily protein
Chr1_+_29582907 0.13 AT1G78650.1
POLD3
DNA-directed DNA polymerase
Chr3_+_1698297 0.11 AT3G05740.2
RECQI1
RECQ helicase l1
Chr3_-_2966197 0.11 AT3G09660.1
AT3G09660.2
AT3G09660.3
MCM8
minichromosome maintenance 8
Chr3_+_22421344 0.10 AT3G60660.1
AT3G60660
spindle/kinetochore-associated-like protein
Chr4_-_8273903 0.10 AT4G14365.1
XBAT34
hypothetical protein
Chr1_+_30048519 0.10 AT1G79890.1
AT1G79890.2
AT1G79890
RAD3-like DNA-binding helicase protein
Chr3_+_1698079 0.09 AT3G05740.1
RECQI1
RECQ helicase l1
Chr4_-_13048262 0.08 AT4G25540.1
MSH3
homolog of DNA mismatch repair protein MSH3
Chr1_-_1330402 0.07 AT1G04730.3
CTF18
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_23444006 0.07 AT3G63480.1
AT3G63480.2
AT3G63480
ATP binding microtubule motor family protein
Chr2_+_12689581 0.07 AT2G29680.1
CDC6
cell division control 6
Chr2_-_18556669 0.06 AT2G44980.2
AT2G44980.1
AT2G44980.3
ASG3
SNF2 domain-containing protein / helicase domain-containing protein
Chr1_+_30048739 0.06 AT1G79890.3
AT1G79890
RAD3-like DNA-binding helicase protein
Chr4_-_1080722 0.04 AT4G02460.3
AT4G02460.4
AT4G02460.2
AT4G02460.1
PMS1
DNA mismatch repair protein
Chr2_-_17566237 0.03 AT2G42120.2
POLD2
DNA polymerase delta small subunit
Chr1_+_30049612 0.02 AT1G79890.4
AT1G79890
RAD3-like DNA-binding helicase protein
Chr3_-_8180122 0.01 AT3G23020.1
AT3G23020
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_17566032 0.01 AT2G42120.1
POLD2
DNA polymerase delta small subunit
Chr1_+_25561638 0.01 AT1G68200.1
AT1G68200.3
AT1G68200.2
AT1G68200.4
AT1G68200.5
AT1G68200
Zinc finger C-x8-C-x5-C-x3-H type family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36010_AT5G02470

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.9 GO:2000045 regulation of G1/S transition of mitotic cell cycle(GO:2000045)
0.5 3.1 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.4 2.6 GO:0006272 leading strand elongation(GO:0006272)
0.4 1.3 GO:1902315 cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
0.3 0.6 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.3 0.5 GO:0006348 chromatin silencing at telomere(GO:0006348)
0.2 0.7 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.2 0.6 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.2 0.6 GO:0055047 generative cell mitosis(GO:0055047)
0.1 0.8 GO:0006336 DNA replication-independent nucleosome assembly(GO:0006336)
0.1 2.6 GO:0006270 DNA replication initiation(GO:0006270)
0.1 0.3 GO:0031538 negative regulation of anthocyanin metabolic process(GO:0031538)
0.1 0.2 GO:0048478 replication fork protection(GO:0048478)
0.1 0.6 GO:0070193 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.1 0.7 GO:0006265 DNA topological change(GO:0006265)
0.0 0.2 GO:0000012 single strand break repair(GO:0000012)
0.0 0.1 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.0 0.1 GO:0009557 antipodal cell differentiation(GO:0009557)
0.0 3.9 GO:0006260 DNA replication(GO:0006260)
0.0 0.2 GO:0015785 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.0 0.4 GO:0000077 DNA damage checkpoint(GO:0000077)
0.0 0.1 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.0 0.6 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 0.2 GO:0032392 DNA geometric change(GO:0032392) DNA duplex unwinding(GO:0032508)
0.0 0.8 GO:0048544 recognition of pollen(GO:0048544)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.4 1.1 GO:0005656 nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.3 1.9 GO:0000808 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.2 2.1 GO:0042555 MCM complex(GO:0042555)
0.1 0.4 GO:0030896 checkpoint clamp complex(GO:0030896)
0.1 0.6 GO:0001673 male germ cell nucleus(GO:0001673)
0.1 0.3 GO:0030874 nucleolar chromatin(GO:0030874)
0.1 0.4 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.1 0.8 GO:0005662 DNA replication factor A complex(GO:0005662)
0.1 0.6 GO:0030892 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.1 0.2 GO:0031298 replication fork protection complex(GO:0031298)
0.0 0.2 GO:0043625 delta DNA polymerase complex(GO:0043625)
0.0 0.3 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.0 0.6 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 0.2 GO:0000777 condensed chromosome kinetochore(GO:0000777)
0.0 0.1 GO:0000811 GINS complex(GO:0000811)
0.0 0.3 GO:0005663 DNA replication factor C complex(GO:0005663)
0.0 0.3 GO:0005657 replication fork(GO:0005657)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 2.3 GO:0061731 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.2 1.1 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.2 3.6 GO:0003688 DNA replication origin binding(GO:0003688)
0.2 0.6 GO:0070182 DNA polymerase binding(GO:0070182)
0.1 0.8 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.1 0.7 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.5 GO:0010485 H4 histone acetyltransferase activity(GO:0010485)
0.0 0.2 GO:0005460 UDP-glucose transmembrane transporter activity(GO:0005460)
0.0 0.3 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.0 0.4 GO:0003916 DNA topoisomerase activity(GO:0003916) DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.2 GO:0003910 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.0 0.6 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.0 0.3 GO:0033170 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.0 0.2 GO:0009378 four-way junction helicase activity(GO:0009378)
0.0 0.9 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.8 GO:0003697 single-stranded DNA binding(GO:0003697)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.4 PID ATR PATHWAY ATR signaling pathway
0.1 0.8 PID CMYB PATHWAY C-MYB transcription factor network
0.0 0.3 PID ATM PATHWAY ATM pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.2 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.3 1.4 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.2 1.3 REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND Genes involved in Processive synthesis on the lagging strand
0.1 0.6 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.0 0.3 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination
0.0 0.0 REACTOME ORC1 REMOVAL FROM CHROMATIN Genes involved in Orc1 removal from chromatin