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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G36010
Z-value: 1.09
Transcription factors associated with AT2G36010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G36010
|
AT2G36010 | E2F transcription factor 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| E2F3 | arTal_v1_Chr2_+_15119516_15119589 | -0.03 | 9.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_13674255_13674398 Show fit | 1.39 |
AT2G32190.2
AT2G32190.1 |
cysteine-rich/transmembrane domain A-like protein |
|
| arTal_v1_Chr1_+_27521944_27521944 Show fit | 1.09 |
AT1G73190.1
|
Aquaporin-like superfamily protein |
|
| arTal_v1_Chr5_+_26772644_26772644 Show fit | 1.00 |
AT5G67080.1
|
mitogen-activated protein kinase kinase kinase 19 |
|
| arTal_v1_Chr2_-_17115047_17115047 Show fit | 0.92 |
AT2G41010.1
|
calmodulin (CAM)-binding protein of 25 kDa |
|
| arTal_v1_Chr3_-_17910736_17910738 Show fit | 0.92 |
AT3G48360.3
AT3G48360.1 AT3G48360.2 |
BTB and TAZ domain protein 2 |
|
| arTal_v1_Chr3_+_23201032_23201033 Show fit | 0.90 |
AT3G62720.2
AT3G62720.1 |
xylosyltransferase 1 |
|
| arTal_v1_Chr5_-_37999_37999 Show fit | 0.89 |
AT5G01100.1
|
O-fucosyltransferase family protein |
|
| arTal_v1_Chr1_-_23469247_23469289 Show fit | 0.85 |
AT1G63260.4
AT1G63260.1 AT1G63260.2 AT1G63260.3 AT1G63260.5 AT1G63260.6 |
tetraspanin10 |
|
| arTal_v1_Chr4_-_16644928_16644928 Show fit | 0.85 |
AT4G34950.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr5_+_16202142_16202142 Show fit | 0.85 |
AT5G40460.1
|
cyclin-dependent kinase inhibitor SMR3-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G36010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.1 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.1 | 1.8 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 1.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 1.3 | GO:0046520 | sphingoid biosynthetic process(GO:0046520) |
| 0.0 | 1.3 | GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800) |
| 0.1 | 1.0 | GO:0009969 | xyloglucan biosynthetic process(GO:0009969) |
| 0.3 | 0.9 | GO:0051973 | positive regulation of telomerase activity(GO:0051973) |
| 0.2 | 0.9 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.1 | 0.9 | GO:0007155 | cell adhesion(GO:0007155) biological adhesion(GO:0022610) |
| 0.1 | 0.9 | GO:0010337 | regulation of salicylic acid metabolic process(GO:0010337) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.3 | 0.8 | GO:0031390 | Ctf18 RFC-like complex(GO:0031390) |
| 0.0 | 0.8 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.1 | 0.6 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.6 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.5 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
| 0.1 | 0.5 | GO:0030286 | dynein complex(GO:0030286) |
| 0.0 | 0.4 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 0.4 | GO:0016459 | myosin complex(GO:0016459) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.4 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.2 | 2.1 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 2.1 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
| 0.0 | 2.1 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.4 | 1.3 | GO:0000170 | sphingosine hydroxylase activity(GO:0000170) |
| 0.0 | 1.1 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.2 | 1.0 | GO:0033843 | xyloglucan 6-xylosyltransferase activity(GO:0033843) |
| 0.0 | 1.0 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 1.0 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.0 | 0.9 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.3 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.1 | 0.3 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.0 | 0.1 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |