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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G36010

Z-value: 1.09

Transcription factors associated with AT2G36010

Gene Symbol Gene ID Gene Info
AT2G36010 E2F transcription factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
E2F3arTal_v1_Chr2_+_15119516_15119589-0.039.1e-01Click!

Activity profile of AT2G36010 motif

Sorted Z-values of AT2G36010 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_+_13674255 1.39 AT2G32190.2
AT2G32190.1
cysteine-rich/transmembrane domain A-like protein
Chr1_+_27521944 1.09 AT1G73190.1
Aquaporin-like superfamily protein
Chr5_+_26772644 1.00 AT5G67080.1
mitogen-activated protein kinase kinase kinase 19
Chr2_-_17115047 0.92 AT2G41010.1
calmodulin (CAM)-binding protein of 25 kDa
Chr3_-_17910736 0.92 AT3G48360.3
AT3G48360.1
AT3G48360.2
BTB and TAZ domain protein 2
Chr3_+_23201032 0.90 AT3G62720.2
AT3G62720.1
xylosyltransferase 1
Chr5_-_37999 0.89 AT5G01100.1
O-fucosyltransferase family protein
Chr1_-_23469247 0.85 AT1G63260.4
AT1G63260.1
AT1G63260.2
AT1G63260.3
AT1G63260.5
AT1G63260.6
tetraspanin10
Chr4_-_16644928 0.85 AT4G34950.1
Major facilitator superfamily protein
Chr5_+_16202142 0.85 AT5G40460.1
cyclin-dependent kinase inhibitor SMR3-like protein
Chr5_-_1293723 0.84 AT5G04530.1
3-ketoacyl-CoA synthase 19
Chr4_-_11592425 0.82 AT4G21850.1
methionine sulfoxide reductase B9
Chr2_+_15859204 0.82 AT2G37870.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_-_14841067 0.81 AT4G30340.2
AT4G30340.1
diacylglycerol kinase 7
Chr4_-_11592238 0.80 AT4G21850.2
methionine sulfoxide reductase B9
Chr3_-_2137280 0.78 AT3G06770.4
AT3G06770.3
Pectin lyase-like superfamily protein
Chr5_+_26266180 0.78 AT5G65690.1
AT5G65690.2
AT5G65690.3
AT5G65690.4
phosphoenolpyruvate carboxykinase 2
Chr3_-_2137012 0.77 AT3G06770.1
AT3G06770.5
Pectin lyase-like superfamily protein
Chr1_+_4095246 0.72 AT1G12100.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_7388512 0.70 AT1G21100.1
O-methyltransferase family protein
Chr1_-_16838562 0.69 AT1G44350.1
IAA-amino acid hydrolase ILR1-like 6
Chr1_+_3777236 0.68 AT1G11260.1
sugar transporter 1
Chr4_+_18121526 0.67 AT4G38825.1
SAUR-like auxin-responsive protein family
Chr2_-_14990931 0.67 AT2G35658.2
AT2G35658.3
AT2G35658.1
transmembrane protein
Chr2_-_17837618 0.67 AT2G42870.1
phy rapidly regulated 1
Chr4_+_12072760 0.67 AT4G23030.1
MATE efflux family protein
Chr1_-_4882265 0.66 AT1G14290.1
sphingoid base hydroxylase 2
Chr1_-_4882003 0.66 AT1G14290.2
sphingoid base hydroxylase 2
Chr1_+_12188678 0.65 AT1G33610.1
Leucine-rich repeat (LRR) family protein
Chr3_-_7286442 0.64 AT3G20830.1
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Chr1_+_10371675 0.64 AT1G29660.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_2137641 0.63 AT3G06770.2
Pectin lyase-like superfamily protein
Chr2_-_13999949 0.62 AT2G32980.1
HAUS augmin-like complex subunit
Chr1_-_13456336 0.62 AT1G36060.1
Integrase-type DNA-binding superfamily protein
Chr4_+_16354857 0.61 AT4G34150.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_-_14562863 0.61 AT5G36910.1
thionin 2.2
Chr3_+_5121303 0.61 AT3G15210.1
ethylene responsive element binding factor 4
Chr1_+_28668664 0.60 AT1G76410.1
RING/U-box superfamily protein
Chr2_-_15790139 0.60 AT2G37640.1
Barwin-like endoglucanases superfamily protein
Chr1_+_6106323 0.59 AT1G17750.1
PEP1 receptor 2
Chr2_+_15445294 0.59 AT2G36830.1
gamma tonoplast intrinsic protein
Chr5_-_8122784 0.58 AT5G24030.2
AT5G24030.1
SLAC1 homologue 3
Chr2_+_13916440 0.58 AT2G32800.1
protein kinase family protein
Chr2_-_17992047 0.57 AT2G43290.1
Calcium-binding EF-hand family protein
Chr3_+_20005616 0.57 AT3G54020.1
Inositol phosphorylceramide synthase 1
Chr5_-_17157857 0.57 AT5G42785.1
transmembrane protein
Chr3_-_4620305 0.57 AT3G13980.1
SKI/DACH domain protein
Chr2_-_12433796 0.57 AT2G28950.1
expansin A6
Chr5_+_3122731 0.56 AT5G09980.1
elicitor peptide 4 precursor
Chr3_-_10231567 0.56 AT3G27630.1
cyclin-dependent kinase inhibitor SMR3-like protein
Chr3_-_1136397 0.55 AT3G04290.1
Li-tolerant lipase 1
Chr5_-_19939797 0.54 AT5G49170.1
hypothetical protein
Chr5_-_15713158 0.54 AT5G39240.1
transcription factor UPBEAT-like protein
Chr3_+_5464728 0.53 AT3G16120.1
AT3G16120.2
Dynein light chain type 1 family protein
Chr5_+_16733663 0.53 AT5G41800.1
Transmembrane amino acid transporter family protein
Chr4_+_2449434 0.52 AT4G04840.1
methionine sulfoxide reductase B6
Chr5_+_24252138 0.52 AT5G60250.1
zinc finger (C3HC4-type RING finger) family protein
Chr4_-_12393982 0.52 AT4G23810.1
WRKY family transcription factor
Chr2_-_15789605 0.51 AT2G37640.2
Barwin-like endoglucanases superfamily protein
Chr5_-_9944942 0.50 AT5G27920.1
F-box family protein
Chr3_+_7518784 0.50 AT3G21351.1
transmembrane protein
Chr2_-_10439469 0.50 AT2G24570.1
WRKY DNA-binding protein 17
Chr5_-_26481528 0.49 AT5G66300.1
NAC domain containing protein 105
Chr4_+_7647237 0.48 AT4G13130.1
Cysteine/Histidine-rich C1 domain family protein
Chr1_-_17498152 0.48 AT1G47603.1
purine permease 19
Chr1_+_16739192 0.47 AT1G44050.1
Cysteine/Histidine-rich C1 domain family protein
Chr1_+_11212958 0.47 AT1G31320.1
LOB domain-containing protein 4
Chr3_-_1674908 0.47 AT3G05685.2
AT3G05685.3
AT3G05685.1
Cystatin/monellin superfamily protein
Chr5_-_1695557 0.47 AT5G05660.1
NF-X1-type zinc finger protein NFXL2
Chr5_+_5038563 0.47 AT5G15530.1
biotin carboxyl carrier protein 2
Chr3_-_13049106 0.45 AT3G32040.1
Terpenoid synthases superfamily protein
Chr1_+_786832 0.45 AT1G03220.1
Eukaryotic aspartyl protease family protein
Chr2_+_11669629 0.45 AT2G27260.1
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr3_+_20296416 0.45 AT3G54810.1
Plant-specific GATA-type zinc finger transcription factor family protein
Chr4_+_6964398 0.45 AT4G11460.3
AT4G11460.1
cysteine-rich RLK (RECEPTOR-like protein kinase) 30
Chr1_+_22835078 0.45 AT1G61820.1
beta glucosidase 46
Chr4_+_1158783 0.45 AT4G02655.2
AT4G02655.1
transmembrane protein
Chr5_-_242322 0.44 AT5G01640.1
prenylated RAB acceptor 1.B5
Chr1_-_6496491 0.44 AT1G18835.1
mini zinc finger
Chr1_-_6873358 0.44 AT1G19840.1
SAUR-like auxin-responsive protein family
Chr5_-_26728715 0.44 AT5G66940.1
Dof-type zinc finger DNA-binding family protein
Chr3_+_20296130 0.44 AT3G54810.2
Plant-specific GATA-type zinc finger transcription factor family protein
Chr1_+_6315636 0.43 AT1G18350.1
MAP kinase kinase 7
Chr5_-_26501955 0.43 AT5G66330.1
Leucine-rich repeat (LRR) family protein
Chr3_+_19474945 0.43 AT3G52525.1
ovate family protein 6
Chr3_-_7101637 0.42 AT3G20360.1
TRAF-like family protein
Chr5_-_24980075 0.42 AT5G62180.1
carboxyesterase 20
Chr2_-_11228123 0.42 AT2G26380.1
Leucine-rich repeat (LRR) family protein
Chr5_-_5673656 0.42 AT5G17250.1
Alkaline-phosphatase-like family protein
Chr3_-_302277 0.42 AT3G01850.1
AT3G01850.2
Aldolase-type TIM barrel family protein
Chr5_+_18228768 0.42 AT5G45110.1
AT5G45110.2
NPR1-like protein 3
Chr5_+_22735899 0.42 AT5G56170.1
LORELEI-LIKE-GPI-ANCHORED PROTEIN 1
Chr2_-_12181012 0.42 AT2G28490.1
RmlC-like cupins superfamily protein
Chr3_+_19513937 0.42 AT3G52630.2
AT3G52630.1
Nucleic acid-binding, OB-fold-like protein
Chr5_-_19159091 0.42 AT5G47170.1
hypothetical protein
Chr4_+_12086898 0.42 AT4G23060.1
IQ-domain 22
Chr1_+_8922416 0.41 AT1G25425.1
CLAVATA3/ESR-RELATED 43
Chr5_-_25914523 0.41 AT5G64820.1
transmembrane protein
Chr3_+_2620713 0.41 AT3G08630.1
alphavirus core family protein (DUF3411)
Chr4_-_16806830 0.41 AT4G35320.1
hypothetical protein
Chr5_-_17624359 0.41 AT5G43830.1
aluminum induced protein with YGL and LRDR motifs
Chr1_-_18430497 0.40 AT1G49780.1
plant U-box 26
Chr3_-_4493737 0.40 AT3G13700.2
AT3G13700.1
AT3G13710.1
RNA-binding (RRM/RBD/RNP motifs) family protein
prenylated RAB acceptor 1.F4
Chr1_+_25426234 0.40 AT1G67810.1
sulfur E2
Chr4_+_9970798 0.40 AT4G17960.1
phospholipid hydroperoxide glutathione peroxidase
Chr2_+_7692396 0.40 AT2G17705.1
methionine-S-oxide reductase
Chr3_-_5762264 0.40 AT3G16860.1
COBRA-like protein 8 precursor
Chr3_+_2126312 0.40 AT3G06740.1
GATA transcription factor 15
Chr5_+_18930246 0.39 AT5G46650.1
RING/U-box superfamily protein
Chr5_-_19635664 0.39 AT5G48450.1
AT5G48450.2
SKU5 similar 3
Chr1_+_19610856 0.39 AT1G52650.1
F-box/RNI superfamily protein
Chr2_-_18403483 0.39 AT2G44580.2
zinc ion binding protein
Chr5_-_25755501 0.39 AT5G64410.1
oligopeptide transporter 4
Chr5_-_25444438 0.39 AT5G63540.2
AT5G63540.1
recQ-mediated instability protein (DUF1767)
Chr5_-_7669410 0.39 AT5G22930.1
enabled-like protein (DUF1635)
Chr1_+_27444415 0.38 AT1G72950.1
Disease resistance protein (TIR-NBS class)
Chr5_-_22759556 0.38 AT5G56230.1
prenylated RAB acceptor 1.G2
Chr4_+_7962428 0.38 AT4G13710.1
AT4G13710.2
Pectin lyase-like superfamily protein
Chr2_-_16368570 0.38 AT2G39210.1
Major facilitator superfamily protein
Chr3_-_623558 0.37 AT3G02850.3
STELAR K+ outward rectifier
Chr1_-_5744636 0.37 AT1G16780.3
AT1G16780.2
Inorganic H pyrophosphatase family protein
Chr5_+_2414823 0.37 AT5G07640.1
RING/U-box superfamily protein
Chr2_-_6012698 0.37 AT2G14200.1

Chr2_-_18403654 0.37 AT2G44580.1
zinc ion binding protein
Chr4_+_14525830 0.37 AT4G29640.1
Cytidine/deoxycytidylate deaminase family protein
Chr3_-_2225254 0.37 AT3G07030.1
AT3G07030.5
Alba DNA/RNA-binding protein
Chr5_-_23725585 0.37 AT5G58730.1
pfkB-like carbohydrate kinase family protein
Chr3_-_2417822 0.37 AT3G07568.1
fanconi anemia group D2 protein
Chr3_-_387051 0.36 AT3G02140.1
AFP2 (ABI five-binding protein 2) family protein
Chr4_+_2076832 0.36 AT4G04293.1

Chr3_-_16662874 0.36 AT3G45430.1
Concanavalin A-like lectin protein kinase family protein
Chr3_+_22248892 0.35 AT3G60200.1
hypothetical protein
Chr1_-_22595338 0.35 AT1G61260.1
cotton fiber (DUF761)
Chr1_-_22806351 0.35 AT1G61750.1
Receptor-like protein kinase-related family protein
Chr4_+_18185437 0.35 AT4G39030.1
MATE efflux family protein
Chr5_+_20192159 0.35 AT5G49700.1
Putative AT-hook DNA-binding family protein
Chr3_-_623739 0.35 AT3G02850.1
AT3G02850.2
STELAR K+ outward rectifier
Chr3_-_1758807 0.35 AT3G05890.1
Low temperature and salt responsive protein family
Chr5_-_20489727 0.35 AT5G50335.1
hypothetical protein
Chr5_+_4541780 0.35 AT5G14070.1
Thioredoxin superfamily protein
Chr3_-_19805663 0.35 AT3G53420.2
AT3G53420.1
plasma membrane intrinsic protein 2A
Chr2_-_19304191 0.35 AT2G46980.5
AT2G46980.6
AT2G46980.4
AT2G46980.3
AT2G46980.2
asynaptic protein
Chr3_+_20246504 0.35 AT3G54690.1
Sugar isomerase (SIS) family protein
Chr1_-_5744237 0.35 AT1G16780.1
Inorganic H pyrophosphatase family protein
Chr4_+_9708684 0.34 AT4G17380.2
AT4G17380.1
MUTS-like protein 4
Chr5_+_2280560 0.34 AT5G07270.1
hypothetical protein
Chr5_-_2405557 0.34 AT5G07600.1
Oleosin family protein
Chr3_-_15953346 0.34 AT3G44260.1
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_+_2479514 0.34 AT5G07780.1
Actin-binding FH2 (formin homology 2) family protein
Chr1_+_6294160 0.34 AT1G18280.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_23778255 0.34 AT1G64065.1
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr3_-_23276630 0.34 AT3G62980.1
F-box/RNI-like superfamily protein
Chr1_-_25727386 0.34 AT1G68550.2
Integrase-type DNA-binding superfamily protein
Chr4_+_10375244 0.33 AT4G18950.1
AT4G18950.2
Integrin-linked protein kinase family
Chr1_+_4597567 0.33 AT1G13400.1
C2H2 and C2HC zinc fingers superfamily protein
Chr4_-_1540713 0.33 AT4G03460.1
Ankyrin repeat family protein
Chr3_-_4663363 0.33 AT3G14070.1
cation exchanger 9
Chr1_-_11951982 0.33 AT1G32970.1
Subtilisin-like serine endopeptidase family protein
Chr2_+_8581088 0.33 AT2G19880.2
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_+_1448570 0.33 AT3G05155.2
Major facilitator superfamily protein
Chr1_-_1437763 0.33 AT1G05020.1
ENTH/ANTH/VHS superfamily protein
Chr3_-_16663294 0.33 AT3G45430.3
Concanavalin A-like lectin protein kinase family protein
Chr1_+_568558 0.33 AT1G02650.2
AT1G02650.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_17604944 0.33 AT4G37445.2
AT4G37445.1
calcium ion-binding protein
Chr3_-_2737356 0.33 AT3G08960.3
AT3G08960.2
ARM repeat superfamily protein
Chr4_+_11247991 0.33 AT4G21070.1
breast cancer susceptibility1
Chr3_-_2737105 0.33 AT3G08960.1
ARM repeat superfamily protein
Chr2_+_18902963 0.32 AT2G45940.2
AT2G45940.1
hypothetical protein (DUF295)
Chr1_+_11811040 0.32 AT1G32660.1
F-box and associated interaction domains-containing protein
Chr3_-_3551661 0.32 AT3G11325.1
AT3G11325.2
Phospholipid/glycerol acyltransferase family protein
Chr1_-_2232897 0.32 AT1G07270.2
AT1G07270.1
Cell division control, Cdc6
Chr3_+_1448196 0.32 AT3G05155.1
Major facilitator superfamily protein
Chr1_-_25727701 0.32 AT1G68550.1
Integrase-type DNA-binding superfamily protein
Chr5_-_16407930 0.32 AT5G40940.1
putative fasciclin-like arabinogalactan protein 20
Chr5_-_4869079 0.32 AT5G15030.1
paired amphipathic helix Sin3-like protein
Chr1_+_5617786 0.32 AT1G16445.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_16664146 0.32 AT3G45430.2
Concanavalin A-like lectin protein kinase family protein
Chr3_-_6313319 0.32 AT3G18380.3
AT3G18380.1
AT3G18380.2
DNA-BINDING TRANSCRIPTION FACTOR 2
Chr3_+_4099199 0.31 AT3G12890.1
activator of spomin::LUC2
Chr4_+_16716806 0.31 AT4G35120.1
Galactose oxidase/kelch repeat superfamily protein
Chr1_-_30297224 0.31 AT1G80590.1
WRKY DNA-binding protein 66
Chr2_+_12749743 0.31 AT2G29900.1
Presenilin-2
Chr4_+_14510147 0.31 AT4G29580.1
AT4G29580.2
Cytidine/deoxycytidylate deaminase family protein
Chr1_-_1301773 0.31 AT1G04660.1
glycine-rich protein
Chr5_+_6241134 0.31 AT5G18710.1
DNAJ heat shock amino-terminal domain protein, putative (DUF3444)
Chr1_+_28400439 0.31 AT1G75630.1
AT1G75630.2
vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
Chr4_-_1539987 0.31 AT4G03460.2
Ankyrin repeat family protein
Chr2_-_18398504 0.31 AT2G44581.1
RING/U-box superfamily protein
Chr2_+_8581358 0.31 AT2G19880.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_-_18022615 0.31 AT3G48640.1
AT3G48640.2
transmembrane protein
Chr1_+_5758855 0.31 AT1G16825.1
AT1G16825.2
Reticulon family protein
Chr3_-_6623278 0.31 AT3G19160.1
ATP/ADP isopentenyltransferase
Chr3_-_2501035 0.31 AT3G07830.1
Pectin lyase-like superfamily protein
Chr2_+_15679107 0.31 AT2G37370.2
AT2G37370.1
AT2G37370.4
AT2G37370.3
centrosomal protein of 135 kDa-like protein
Chr4_-_13910995 0.31 AT4G27950.1
cytokinin response factor 4
Chr4_+_10979741 0.31 AT4G20325.2
AT4G20325.1
ribonuclease H2 subunit B
Chr1_-_26675990 0.30 AT1G70740.2
AT1G70740.1
Protein kinase superfamily protein
Chr4_+_14290947 0.30 AT4G28990.1
RNA-binding protein-like protein
Chr4_+_12278915 0.30 AT4G23530.1
ROH1, putative (DUF793)
Chr5_+_21601481 0.30 AT5G53240.1
hypothetical protein (DUF295)

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36010

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.2 0.9 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.2 0.6 GO:0031023 microtubule organizing center organization(GO:0031023)
0.1 0.7 GO:0019323 pentose catabolic process(GO:0019323)
0.1 0.6 GO:0060631 regulation of meiosis I(GO:0060631)
0.1 0.4 GO:0071242 cellular response to ammonium ion(GO:0071242)
0.1 0.7 GO:0046087 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.1 0.6 GO:0000084 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.1 0.5 GO:0010226 response to lithium ion(GO:0010226)
0.1 1.3 GO:0046520 sphingoid biosynthetic process(GO:0046520)
0.1 0.3 GO:0071158 negative regulation of fatty acid biosynthetic process(GO:0045717) regulation of cell cycle arrest(GO:0071156) positive regulation of cell cycle arrest(GO:0071158)
0.1 0.5 GO:2000582 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.1 0.8 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.1 0.6 GO:0000710 meiotic mismatch repair(GO:0000710)
0.1 1.7 GO:0006949 syncytium formation(GO:0006949)
0.1 0.5 GO:0031507 heterochromatin assembly(GO:0031507)
0.1 0.3 GO:0043157 response to cation stress(GO:0043157)
0.1 0.2 GO:0055068 nickel cation transmembrane transport(GO:0035444) cobalt ion homeostasis(GO:0055068)
0.1 0.4 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.1 0.2 GO:0006425 glutaminyl-tRNA aminoacylation(GO:0006425)
0.1 0.9 GO:0007155 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.1 0.2 GO:0042908 xenobiotic transport(GO:0042908)
0.1 0.6 GO:0006821 chloride transport(GO:0006821)
0.1 0.5 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.1 0.4 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.1 1.8 GO:0030091 protein repair(GO:0030091)
0.1 0.2 GO:0009204 deoxyribonucleoside triphosphate catabolic process(GO:0009204) pyrimidine deoxyribonucleoside triphosphate metabolic process(GO:0009211) pyrimidine deoxyribonucleotide metabolic process(GO:0009219) pyrimidine deoxyribonucleotide biosynthetic process(GO:0009221) 2'-deoxyribonucleotide biosynthetic process(GO:0009265) deoxyribose phosphate biosynthetic process(GO:0046385) deoxyribose phosphate catabolic process(GO:0046386)
0.1 0.3 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.1 0.4 GO:0051176 positive regulation of sulfur metabolic process(GO:0051176)
0.1 0.2 GO:0010266 response to vitamin B1(GO:0010266)
0.1 0.6 GO:0009405 pathogenesis(GO:0009405)
0.1 0.4 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.1 0.3 GO:0033385 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.1 0.5 GO:2000037 regulation of stomatal complex patterning(GO:2000037)
0.1 0.2 GO:0010351 lithium ion transport(GO:0010351)
0.1 0.2 GO:0019695 choline metabolic process(GO:0019695)
0.1 0.7 GO:0015749 monosaccharide transport(GO:0015749)
0.1 0.6 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.1 0.2 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.1 0.9 GO:0010337 regulation of salicylic acid metabolic process(GO:0010337)
0.1 0.3 GO:0006272 leading strand elongation(GO:0006272)
0.1 1.0 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.1 0.7 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.7 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.0 0.1 GO:0051291 protein heterooligomerization(GO:0051291) regulation of oxidoreductase activity(GO:0051341) regulation of response to reactive oxygen species(GO:1901031)
0.0 0.3 GO:0048830 adventitious root development(GO:0048830)
0.0 0.1 GO:2000653 regulation of genetic imprinting(GO:2000653)
0.0 0.5 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.0 0.4 GO:0009697 salicylic acid biosynthetic process(GO:0009697)
0.0 0.2 GO:0006182 cGMP biosynthetic process(GO:0006182) cGMP metabolic process(GO:0046068)
0.0 0.3 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.0 0.3 GO:0000304 response to singlet oxygen(GO:0000304)
0.0 0.3 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.8 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)
0.0 0.3 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.0 0.8 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.0 0.7 GO:0009641 shade avoidance(GO:0009641)
0.0 3.1 GO:0009627 systemic acquired resistance(GO:0009627)
0.0 0.2 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.0 0.4 GO:0033517 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.0 0.2 GO:0048445 carpel morphogenesis(GO:0048445)
0.0 0.2 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.0 0.5 GO:0048766 root hair initiation(GO:0048766)
0.0 0.1 GO:0051180 vitamin transport(GO:0051180)
0.0 1.3 GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.0 0.1 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.0 0.4 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.0 0.3 GO:0006265 DNA topological change(GO:0006265)
0.0 0.3 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.2 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.5 GO:0051555 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.0 0.5 GO:0055075 potassium ion homeostasis(GO:0055075)
0.0 0.2 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.2 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.0 0.5 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 0.1 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.2 GO:0009745 sucrose mediated signaling(GO:0009745)
0.0 0.7 GO:0019915 lipid storage(GO:0019915)
0.0 0.4 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.2 GO:0030149 sphingolipid catabolic process(GO:0030149)
0.0 0.2 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.0 0.1 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.0 0.2 GO:0048587 regulation of short-day photoperiodism, flowering(GO:0048587)
0.0 0.2 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.0 0.2 GO:0009099 valine biosynthetic process(GO:0009099)
0.0 0.4 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 0.3 GO:0051262 protein tetramerization(GO:0051262)
0.0 0.1 GO:0006772 thiamine metabolic process(GO:0006772) thiamine diphosphate biosynthetic process(GO:0009229) thiamine diphosphate metabolic process(GO:0042357) thiamine-containing compound metabolic process(GO:0042723)
0.0 0.5 GO:0006863 purine nucleobase transport(GO:0006863)
0.0 0.1 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.0 0.1 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.0 0.2 GO:0051214 RNA virus induced gene silencing(GO:0051214)
0.0 0.1 GO:0046621 negative regulation of organ growth(GO:0046621)
0.0 0.7 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.5 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.2 GO:0036297 interstrand cross-link repair(GO:0036297)
0.0 0.3 GO:0010152 pollen maturation(GO:0010152)
0.0 0.2 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 0.5 GO:0010193 response to ozone(GO:0010193)
0.0 0.2 GO:0050898 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.0 0.1 GO:0080144 amino acid homeostasis(GO:0080144)
0.0 0.2 GO:0016024 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.0 0.1 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.0 0.2 GO:0015770 sucrose transport(GO:0015770)
0.0 0.1 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.0 0.2 GO:0048658 anther wall tapetum development(GO:0048658)
0.0 0.4 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.2 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.0 0.0 GO:0060236 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
0.0 0.1 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.1 GO:0031929 TOR signaling(GO:0031929)
0.0 0.0 GO:0032491 detection of molecule of fungal origin(GO:0032491)
0.0 0.1 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.2 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.0 0.2 GO:0033356 UDP-L-arabinose metabolic process(GO:0033356)
0.0 0.4 GO:0010022 meristem determinacy(GO:0010022)
0.0 0.4 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 0.2 GO:0006573 valine metabolic process(GO:0006573) valine catabolic process(GO:0006574)
0.0 0.2 GO:0050777 negative regulation of immune response(GO:0050777)
0.0 0.2 GO:0015743 malate transport(GO:0015743)
0.0 0.1 GO:0032366 intracellular sterol transport(GO:0032366)
0.0 0.1 GO:0080060 integument development(GO:0080060)
0.0 0.3 GO:0009825 multidimensional cell growth(GO:0009825)
0.0 0.1 GO:0071492 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.0 0.3 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0031390 Ctf18 RFC-like complex(GO:0031390)
0.1 0.5 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.1 0.3 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.1 0.5 GO:0030286 dynein complex(GO:0030286)
0.1 0.3 GO:0032299 ribonuclease H2 complex(GO:0032299)
0.1 0.2 GO:0032301 MutSalpha complex(GO:0032301)
0.1 0.2 GO:0016328 lateral plasma membrane(GO:0016328)
0.1 0.6 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.3 GO:0043073 germ cell nucleus(GO:0043073)
0.0 0.4 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.1 GO:0036387 nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.0 0.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.3 GO:0070531 BRCA1-A complex(GO:0070531)
0.0 0.8 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.1 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.0 0.6 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.1 GO:0034426 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.0 0.4 GO:0016459 myosin complex(GO:0016459)
0.0 0.1 GO:0030906 retromer, cargo-selective complex(GO:0030906)
0.0 0.3 GO:0005682 U5 snRNP(GO:0005682)
0.0 0.3 GO:0005801 cis-Golgi network(GO:0005801)
0.0 0.2 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.3 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.0 0.9 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.6 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.1 GO:0000439 core TFIIH complex(GO:0000439)
0.0 0.3 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.0 0.2 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.0 0.1 GO:0031298 replication fork protection complex(GO:0031298)
0.0 0.1 GO:0038201 TORC1 complex(GO:0031931) TOR complex(GO:0038201)
0.0 0.1 GO:0005662 DNA replication factor A complex(GO:0005662)
0.0 0.1 GO:0005845 mRNA cap binding complex(GO:0005845)
0.0 0.2 GO:0044450 microtubule organizing center part(GO:0044450)
0.0 0.2 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.2 0.7 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.2 1.0 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.2 0.6 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.2 2.1 GO:0033743 peptide-methionine (R)-S-oxide reductase activity(GO:0033743)
0.2 0.6 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.2 0.5 GO:0009374 biotin binding(GO:0009374)
0.2 0.6 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.1 0.7 GO:0004126 cytidine deaminase activity(GO:0004126)
0.1 0.8 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 0.5 GO:0045505 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.1 0.7 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.1 0.8 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.1 0.3 GO:0043812 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.1 0.2 GO:0015099 cobalt ion transmembrane transporter activity(GO:0015087) nickel cation transmembrane transporter activity(GO:0015099)
0.1 0.7 GO:0015271 outward rectifier potassium channel activity(GO:0015271)
0.1 0.2 GO:0004819 glutamine-tRNA ligase activity(GO:0004819)
0.1 0.2 GO:0032143 single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405)
0.1 0.3 GO:0097157 U2 snRNA binding(GO:0030620) pre-mRNA intronic binding(GO:0097157)
0.1 0.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.1 0.3 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.1 0.8 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.1 0.6 GO:0015197 peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198)
0.1 0.2 GO:0000234 phosphoethanolamine N-methyltransferase activity(GO:0000234)
0.1 0.3 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.0 0.9 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.0 0.1 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.0 0.4 GO:0042299 lupeol synthase activity(GO:0042299)
0.0 0.3 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.0 0.1 GO:0008517 folic acid transporter activity(GO:0008517)
0.0 1.0 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.4 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 2.1 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.5 GO:0033613 activating transcription factor binding(GO:0033613)
0.0 0.8 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.6 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.0 0.3 GO:0010011 auxin binding(GO:0010011)
0.0 0.1 GO:0030975 thiamine diphosphokinase activity(GO:0004788) thiamine binding(GO:0030975)
0.0 0.8 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.1 GO:0022829 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.0 0.2 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.0 0.7 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.3 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.2 GO:0004129 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.0 0.2 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.0 0.3 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.4 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 2.1 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.3 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 0.2 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.0 0.6 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.0 0.2 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.2 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.0 0.1 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.0 0.2 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 0.2 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.0 0.2 GO:0004383 guanylate cyclase activity(GO:0004383)
0.0 0.1 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.0 0.3 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.0 0.1 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.0 0.1 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.0 0.2 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.2 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.0 0.5 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.2 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.1 GO:0016436 rRNA (uridine) methyltransferase activity(GO:0016436) rRNA (uridine-N3-)-methyltransferase activity(GO:0070042)
0.0 0.5 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.1 GO:0008174 mRNA methyltransferase activity(GO:0008174)
0.0 0.1 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.3 GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861)
0.0 0.2 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.0 0.1 GO:0045431 flavonol synthase activity(GO:0045431)
0.0 0.4 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 1.1 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 0.3 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.4 GO:0033293 monocarboxylic acid binding(GO:0033293)
0.0 0.2 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 0.4 GO:0008810 cellulase activity(GO:0008810)
0.0 0.1 GO:0004096 catalase activity(GO:0004096)
0.0 0.6 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.3 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 0.2 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.0 0.5 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 1.0 GO:0019901 protein kinase binding(GO:0019901)
0.0 0.2 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.2 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.1 GO:0004032 alditol:NADP+ 1-oxidoreductase activity(GO:0004032)
0.0 2.4 GO:0005516 calmodulin binding(GO:0005516)
0.0 0.7 GO:0015298 solute:cation antiporter activity(GO:0015298) cation:cation antiporter activity(GO:0015491)
0.0 0.1 GO:0098847 single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.1 0.3 PID AURORA A PATHWAY Aurora A signaling
0.0 0.4 PID FANCONI PATHWAY Fanconi anemia pathway
0.0 0.1 PID CMYB PATHWAY C-MYB transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.1 0.3 REACTOME FANCONI ANEMIA PATHWAY Genes involved in Fanconi Anemia pathway
0.1 0.3 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.0 0.1 REACTOME TRNA AMINOACYLATION Genes involved in tRNA Aminoacylation