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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G35700
Z-value: 0.74
Transcription factors associated with AT2G35700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G35700
|
AT2G35700 | ERF family protein 38 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF38 | arTal_v1_Chr2_+_15005064_15005064 | 0.72 | 3.4e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 3.15 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 2.54 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr5_+_5209717_5209717 Show fit | 2.29 |
AT5G15960.1
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 2.14 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 1.86 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 1.70 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.65 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_+_5211719_5211719 Show fit | 1.61 |
AT5G15970.1
|
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
|
| arTal_v1_Chr1_-_5765798_5765798 Show fit | 1.51 |
AT1G16850.1
|
transmembrane protein |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 1.36 |
AT2G47180.1
|
galactinol synthase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G35700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 4.7 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.5 | 4.2 | GO:0009819 | drought recovery(GO:0009819) |
| 0.3 | 3.5 | GO:0009608 | response to symbiont(GO:0009608) |
| 0.2 | 2.7 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 2.4 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.2 | 2.2 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
| 0.4 | 1.9 | GO:0010360 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
| 0.0 | 1.9 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 1.8 | GO:0005986 | sucrose biosynthetic process(GO:0005986) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 31.3 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 11.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 7.8 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 5.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 2.6 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 1.8 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.0 | 1.7 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 1.5 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 1.5 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 1.1 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.1 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.5 | 4.9 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 2.8 | GO:0019187 | beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753) |
| 0.2 | 2.4 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
| 0.1 | 2.4 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 2.3 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.2 | 1.9 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.1 | 1.7 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
| 0.2 | 1.6 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
| 0.1 | 1.6 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.1 | 0.4 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.4 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.2 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 0.7 | REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | Genes involved in Downstream signaling of activated FGFR |
| 0.2 | 0.7 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 0.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.5 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.0 | 0.4 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.3 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.3 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.0 | 0.3 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |