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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G35700

Z-value: 0.74

Transcription factors associated with AT2G35700

Gene Symbol Gene ID Gene Info
AT2G35700
AT2G35700 ERF family protein 38

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ERF38arTal_v1_Chr2_+_15005064_150050640.723.4e-03Click!

Activity profile of AT2G35700 motif

Sorted Z-values of AT2G35700 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_17712290 3.15 AT2G42540.2
AT2G42540.4
AT2G42540.1
AT2G42540.3
COR15A
cold-regulated 15a
Chr2_-_17710433 2.54 AT2G42530.1
COR15B
cold regulated 15b
Chr5_+_5209717 2.29 AT5G15960.1
KIN1
stress-responsive protein (KIN1) / stress-induced protein (KIN1)
Chr5_+_21240717 2.14 AT5G52310.1
LTI78
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Chr1_+_3019639 1.86 AT1G09350.1
GolS3
galactinol synthase 3
Chr1_+_3020221 1.70 AT1G09350.2
GolS3
galactinol synthase 3
Chr3_+_4104463 1.65 AT3G12900.1
AT3G12900
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_5211719 1.61 AT5G15970.1
KIN2
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)
Chr1_-_5765798 1.51 AT1G16850.1
AT1G16850
transmembrane protein
Chr2_-_19370478 1.36 AT2G47180.1
GolS1
galactinol synthase 1
Chr4_-_15954803 1.32 AT4G33070.1
AT4G33070
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Chr2_+_15106940 1.29 AT2G35960.1
NHL12
NDR1/HIN1-like 12
Chr2_+_9126263 1.28 AT2G21320.1
BBX18
B-box zinc finger family protein
Chr2_+_13381767 1.24 AT2G31380.1
STH
salt tolerance homologue
Chr2_-_12415661 1.17 AT2G28900.1
OEP16-1
outer plastid envelope protein 16-1
Chr1_-_17266724 1.05 AT1G46768.3
AT1G46768.2
AT1G46768.1
RAP2.1
related to AP2 1
Chr1_-_3756998 1.05 AT1G11210.1
AT1G11210
cotton fiber protein, putative (DUF761)
Chr3_-_7796310 1.03 AT3G22120.1
AT3G22120.2
CWLP
cell wall-plasma membrane linker protein
Chr1_-_7086873 1.01 AT1G20440.1
COR47
cold-regulated 47
Chr5_+_19481897 0.98 AT5G48070.1
XTH20
xyloglucan endotransglucosylase/hydrolase 20
Chr1_+_16263805 0.93 AT1G43160.1
RAP2.6
related to AP2 6
Chr3_+_5720941 0.91 AT3G16800.5
AT3G16800.4
AT3G16800.2
AT3G16800.6
AT3G16800.1
AT3G16800
Protein phosphatase 2C family protein
Chr2_+_528179 0.88 AT2G02100.1
LCR69
low-molecular-weight cysteine-rich 69
Chr1_+_24551807 0.86 AT1G65960.3
AT1G65960.1
GAD2
glutamate decarboxylase 2
Chr1_+_24554413 0.86 AT1G65960.4
GAD2
glutamate decarboxylase 2
Chr1_+_6763765 0.85 AT1G19530.1
AT1G19530.2
AT1G19530
DNA polymerase epsilon catalytic subunit A
Chr5_+_22388782 0.85 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr3_-_4974521 0.84 AT3G14810.1
AT3G14810.2
MSL5
mechanosensitive channel of small conductance-like 5
Chr5_+_22388521 0.83 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr3_-_2699257 0.83 AT3G08860.2
PYD4
PYRIMIDINE 4
Chr2_+_6950041 0.83 AT2G15970.2
COR413-PM1
cold regulated 413 plasma membrane 1
Chr2_+_6949851 0.83 AT2G15970.1
COR413-PM1
cold regulated 413 plasma membrane 1
Chr5_-_5759817 0.81 AT5G17460.3
AT5G17460.2
AT5G17460.1
AT5G17460
glutamyl-tRNA (Gln) amidotransferase subunit C
Chr3_-_2699420 0.80 AT3G08860.1
PYD4
PYRIMIDINE 4
Chr1_-_507268 0.80 AT1G02460.1
AT1G02460
Pectin lyase-like superfamily protein
Chr1_-_7089606 0.80 AT1G20450.1
AT1G20450.2
ERD10
Dehydrin family protein
Chr1_+_7404328 0.79 AT1G21140.1
AT1G21140
Vacuolar iron transporter (VIT) family protein
Chr3_-_19747114 0.79 AT3G53260.1
PAL2
phenylalanine ammonia-lyase 2
Chr1_+_29356346 0.79 AT1G78070.2
AT1G78070.3
AT1G78070
Transducin/WD40 repeat-like superfamily protein
Chr3_+_23211287 0.79 AT3G62740.2
AT3G62740.1
BGLU7
beta glucosidase 7
Chr1_+_27778984 0.78 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr1_+_24552003 0.78 AT1G65960.2
GAD2
glutamate decarboxylase 2
Chr2_-_19287590 0.77 AT2G46940.1
AT2G46940
fold protein
Chr5_+_2866222 0.77 AT5G09220.1
AAP2
amino acid permease 2
Chr3_+_5025383 0.76 AT3G14940.2
PPC3
phosphoenolpyruvate carboxylase 3
Chr2_-_17065813 0.76 AT2G40900.1
UMAMIT11
nodulin MtN21 /EamA-like transporter family protein
Chr2_-_9056481 0.75 AT2G21130.1
AT2G21130
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr3_-_17506124 0.75 AT3G47500.1
CDF3
cycling DOF factor 3
Chr1_+_29354944 0.75 AT1G78070.1
AT1G78070
Transducin/WD40 repeat-like superfamily protein
Chr3_+_5025184 0.75 AT3G14940.1
PPC3
phosphoenolpyruvate carboxylase 3
Chr1_+_7785708 0.75 AT1G22065.1
AT1G22065
hypothetical protein
Chr3_+_1225919 0.74 AT3G04550.1
AT3G04550
rubisco accumulation factor-like protein
Chr5_-_17755742 0.74 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_-_16634012 0.73 AT5G41590.1
AT5G41590
LURP-one-like protein (DUF567)
Chr1_-_30142697 0.73 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_3536189 0.73 AT5G11110.1
SPS2F
sucrose phosphate synthase 2F
Chr2_+_13814543 0.72 AT2G32540.1
CSLB04
cellulose synthase-like B4
Chr1_-_12224000 0.71 AT1G33720.5
AT1G33720.1
AT1G33720.3
AT1G33720.2
AT1G33720.4
CYP76C6
cytochrome P450, family 76, subfamily C, polypeptide 6
Chr5_-_17022723 0.71 AT5G42570.1
AT5G42570
B-cell receptor-associated 31-like protein
Chr4_+_12827856 0.71 AT4G24960.1
AT4G24960.3
AT4G24960.2
HVA22D
HVA22 homologue D
Chr1_+_18198227 0.70 AT1G49200.1
AT1G49200
RING/U-box superfamily protein
Chr1_-_8414886 0.69 AT1G23800.1
AT1G23800.2
ALDH2B7
aldehyde dehydrogenase 2B7
Chr5_+_20949291 0.69 AT5G51570.1
AT5G51570
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr2_-_8495892 0.69 AT2G19650.1
AT2G19650
Cysteine/Histidine-rich C1 domain family protein
Chr1_-_156011 0.68 AT1G01420.1
UGT72B3
UDP-glucosyl transferase 72B3
Chr2_-_9266393 0.68 AT2G21660.2
GRP7
cold, circadian rhythm, and rna binding 2
Chr3_-_16074929 0.68 AT3G44450.1
AT3G44450
hypothetical protein
Chr1_+_28498821 0.68 AT1G75900.1
AT1G75900
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_-_29034822 0.68 AT1G77280.2
AT1G77280.1
AT1G77280
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr5_+_4776733 0.67 AT5G14780.1
AT5G14780.3
AT5G14780.2
FDH
formate dehydrogenase
Chr3_+_5721225 0.67 AT3G16800.3
AT3G16800
Protein phosphatase 2C family protein
Chr5_+_22515391 0.67 AT5G55580.1
AT5G55580.3
AT5G55580.2
AT5G55580
Mitochondrial transcription termination factor family protein
Chr1_-_156178 0.67 AT1G01420.2
UGT72B3
UDP-glucosyl transferase 72B3
Chr3_+_5243432 0.66 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr3_+_15983199 0.66 AT3G44300.1
NIT2
nitrilase 2
Chr1_-_2711000 0.66 AT1G08560.1
SYP111
syntaxin of plants 111
Chr1_-_4679594 0.66 AT1G13640.2
AT1G13640
Phosphatidylinositol 3- and 4-kinase family protein
Chr3_+_11810726 0.66 AT3G30180.1
BR6OX2
brassinosteroid-6-oxidase 2
Chr5_-_5609589 0.66 AT5G17050.1
UGT78D2
UDP-glucosyl transferase 78D2
Chr2_-_9266557 0.66 AT2G21660.1
GRP7
cold, circadian rhythm, and rna binding 2
Chr5_-_20111806 0.65 AT5G49560.1
AT5G49560
Putative methyltransferase family protein
Chr4_-_13860745 0.65 AT4G27820.1
AT4G27820.2
BGLU9
beta glucosidase 9
Chr1_-_4679862 0.64 AT1G13640.1
AT1G13640
Phosphatidylinositol 3- and 4-kinase family protein
Chr3_+_880988 0.63 AT3G03640.1
BGLU25
beta glucosidase 25
Chr1_+_23953099 0.63 AT1G64500.1
AT1G64500
Glutaredoxin family protein
Chr1_-_29869784 0.63 AT1G79410.1
OCT5
organic cation/carnitine transporter5
Chr3_-_5845220 0.63 AT3G17130.1
AT3G17130
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_-_11719988 0.62 AT1G32450.1
NRT1.5
nitrate transporter 1.5
Chr3_+_4403355 0.62 AT3G13510.1
AT3G13510
carboxyl-terminal peptidase, putative (DUF239)
Chr5_+_3157694 0.61 AT5G10100.1
AT5G10100.3
AT5G10100.4
TPPI
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_13225168 0.61 AT1G35720.1
ANNAT1
annexin 1
Chr5_-_15770456 0.61 AT5G39410.1
AT5G39410
Saccharopine dehydrogenase
Chr5_+_21020014 0.60 AT5G51750.1
SBT1.3
subtilase 1.3
Chr1_-_8189220 0.60 AT1G23090.4
AT1G23090.1
AT1G23090.3
AT1G23090.2
AST91
sulfate transporter 91
Chr4_-_843531 0.60 AT4G01940.1
NFU1
NFU domain protein 1
Chr1_+_14158452 0.60 AT1G37130.1
NIA2
nitrate reductase 2
Chr1_-_3518035 0.60 AT1G10640.1
AT1G10640
Pectin lyase-like superfamily protein
Chr3_-_3961911 0.60 AT3G12490.1
AT3G12490.2
CYSB
cystatin B
Chr5_-_7385833 0.59 AT5G22310.1
AT5G22310
trichohyalin-like protein
Chr3_-_20048190 0.59 AT3G54140.2
PTR1
peptide transporter 1
Chr1_-_172948 0.59 AT1G01470.1
LEA14
Late embryogenesis abundant protein
Chr1_+_23168767 0.59 AT1G62570.1
FMO GS-OX4
flavin-monooxygenase glucosinolate S-oxygenase 4
Chr1_-_29064637 0.59 AT1G77330.1
AT1G77330
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_7946285 0.59 AT5G23575.1
AT5G23575
Transmembrane CLPTM1 family protein
Chr3_+_4544364 0.59 AT3G13810.5
AT3G13810.3
AT3G13810.4
AT3G13810.6
AT3G13810.2
AT3G13810.1
IDD11
indeterminate(ID)-domain 11
Chr4_-_13860402 0.58 AT4G27820.3
BGLU9
beta glucosidase 9
Chr1_+_1889362 0.57 AT1G06180.1
MYB13
myb domain protein 13
Chr1_+_18035967 0.57 AT1G48750.1
AT1G48750
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_4174934 0.57 AT3G13040.2
AT3G13040
myb-like HTH transcriptional regulator family protein
Chr2_+_15053483 0.56 AT2G35840.4
AT2G35840.2
AT2G35840.1
AT2G35840
Sucrose-6F-phosphate phosphohydrolase family protein
Chr3_-_20048745 0.56 AT3G54140.1
PTR1
peptide transporter 1
Chr5_+_4533131 0.56 AT5G14050.1
AT5G14050
Transducin/WD40 repeat-like superfamily protein
Chr3_-_4175248 0.56 AT3G13040.3
AT3G13040
myb-like HTH transcriptional regulator family protein
Chr1_+_18416474 0.56 AT1G49760.2
AT1G49760.1
PAB8
poly(A) binding protein 8
Chr1_-_22382422 0.55 AT1G60790.1
TBL2
trichome birefringence-like protein (DUF828)
Chr2_-_15955752 0.55 AT2G38110.1
GPAT6
glycerol-3-phosphate acyltransferase 6
Chr1_+_17558137 0.55 AT1G47710.1
SERPIN1
Serine protease inhibitor (SERPIN) family protein
Chr3_-_6704312 0.55 AT3G19340.1
AT3G19340
aminopeptidase (DUF3754)
Chr5_+_20070489 0.55 AT5G49480.1
CP1
Ca2+-binding protein 1
Chr5_-_25866972 0.54 AT5G64700.2
AT5G64700.1
UMAMIT21
nodulin MtN21 /EamA-like transporter family protein
Chr1_+_18701882 0.54 AT1G50480.1
THFS
10-formyltetrahydrofolate synthetase
Chr3_-_4175457 0.54 AT3G13040.1
AT3G13040
myb-like HTH transcriptional regulator family protein
Chr2_-_521707 0.54 AT2G02080.4
AT2G02080.2
AT2G02080.5
AT2G02080.6
AT2G02080.3
AT2G02080.1
IDD4
indeterminate(ID)-domain 4
Chr2_-_15560755 0.54 AT2G37040.1
PAL1
PHE ammonia lyase 1
Chr1_-_26540818 0.54 AT1G70420.1
AT1G70420
DNA ligase-like protein, putative (DUF1645)
Chr1_-_638681 0.54 AT1G02870.1
AT1G02870
nucleolar-like protein
Chr2_+_8647721 0.53 AT2G20030.1
AT2G20030
RING/U-box superfamily protein
Chr1_+_27338034 0.53 AT1G72600.2
AT1G72600.1
AT1G72600
hydroxyproline-rich glycoprotein family protein
Chr5_-_7973995 0.53 AT5G23660.1
SWEET12
bidirectional sugar transporter SWEET12-like protein
Chr4_-_13752103 0.53 AT4G27520.1
ENODL2
early nodulin-like protein 2
Chr2_+_15528877 0.53 AT2G36970.1
AT2G36970
UDP-Glycosyltransferase superfamily protein
Chr3_-_4235814 0.53 AT3G13175.1
AT3G13175
transmembrane protein
Chr3_+_10338148 0.52 AT3G27880.1
AT3G27880
hypothetical protein (DUF1645)
Chr4_+_6218319 0.52 AT4G09890.1
AT4G09890
mediator of RNA polymerase II transcription subunit, putative (DUF3511)
Chr1_-_23786800 0.52 AT1G64080.1
MAKR2
membrane-associated kinase regulator
Chr5_-_1742161 0.51 AT5G05790.2
AT5G05790.1
AT5G05790
Duplicated homeodomain-like superfamily protein
Chr5_+_16161449 0.51 AT5G40390.1
SIP1
Raffinose synthase family protein
Chr3_+_7275645 0.51 AT3G20810.1
AT3G20810.4
AT3G20810.2
AT3G20810.5
AT3G20810.3
JMJD5
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_23337167 0.51 AT1G62990.1
KNAT7
homeobox knotted-like protein
Chr2_-_17379059 0.51 AT2G41680.1
NTRC
NADPH-dependent thioredoxin reductase C
Chr1_+_23515680 0.51 AT1G63420.1
AT1G63420.2
AT1G63420
O-glucosyltransferase-like protein (DUF821)
Chr2_+_15053634 0.51 AT2G35840.3
AT2G35840
Sucrose-6F-phosphate phosphohydrolase family protein
Chr1_+_9259432 0.51 AT1G26770.1
EXPA10
expansin A10
Chr1_-_2211021 0.51 AT1G07200.1
AT1G07200
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr3_-_5892216 0.50 AT3G17240.2
AT3G17240.3
AT3G17240.1
mtLPD2
lipoamide dehydrogenase 2
Chr3_+_5539631 0.50 AT3G16340.2
ABCG29
pleiotropic drug resistance 1
Chr2_-_5675995 0.50 AT2G13610.1
ABCG5
ABC-2 type transporter family protein
Chr5_-_17861150 0.50 AT5G44340.1
TUB4
tubulin beta chain 4
Chr3_-_8393467 0.50 AT3G23430.1
PHO1
phosphate 1
Chr2_+_13580371 0.50 AT2G31940.1
AT2G31940
oxidoreductase/transition metal ion-binding protein
Chr1_+_17557091 0.50 AT1G47710.2
SERPIN1
Serine protease inhibitor (SERPIN) family protein
Chr2_+_19269558 0.50 AT2G46900.1
AT2G46900
transcription factor-like protein
Chr5_-_2958971 0.50 AT5G09520.1
PELPK2
hydroxyproline-rich glycoprotein family protein
Chr3_+_5539385 0.50 AT3G16340.1
ABCG29
pleiotropic drug resistance 1
Chr3_-_18456125 0.50 AT3G49760.1
bZIP5
basic leucine-zipper 5
Chr1_-_1894019 0.49 AT1G06190.4
AT1G06190.2
AT1G06190.5
AT1G06190.1
AT1G06190.3
RHON1
Rho termination factor
Chr3_+_1086516 0.49 AT3G04140.1
AT3G04140
Ankyrin repeat family protein
Chr3_-_19991106 0.49 AT3G53990.2
AT3G53990.1
AT3G53990
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr4_+_9257869 0.49 AT4G16390.1
SVR7
pentatricopeptide (PPR) repeat-containing protein
Chr1_-_2212718 0.49 AT1G07200.2
AT1G07200
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr3_-_18857040 0.49 AT3G50740.1
UGT72E1
UDP-glucosyl transferase 72E1
Chr3_-_7101637 0.49 AT3G20360.1
AT3G20360
TRAF-like family protein
Chr1_-_28603932 0.49 AT1G76240.1
AT1G76240
DUF241 domain protein (DUF241)
Chr1_+_846664 0.49 AT1G03420.1
Sadhu4-2

Chr4_+_12456342 0.49 AT4G23990.1
CSLG3
cellulose synthase like G3
Chr4_+_16548600 0.49 AT4G34670.1
AT4G34670
Ribosomal protein S3Ae
Chr2_+_9841842 0.48 AT2G23120.1
AT2G23120
Late embryogenesis abundant protein, group 6
Chr4_+_8708841 0.48 AT4G15248.1
BBX30
B-box type zinc finger family protein
Chr4_+_8418242 0.48 AT4G14690.1
ELIP2
Chlorophyll A-B binding family protein
Chr5_+_6779841 0.48 AT5G20070.1
NUDX19
nudix hydrolase homolog 19
Chr3_+_16818347 0.48 AT3G45780.2
PHOT1
phototropin 1
Chr4_+_13074090 0.48 AT4G25630.1
FIB2
fibrillarin 2
Chr4_+_16881336 0.48 AT4G35560.1
AT4G35560.2
DAW1
Transducin/WD40 repeat-like superfamily protein
Chr5_+_5141035 0.48 AT5G15750.1
AT5G15750
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
Chr1_+_23230922 0.48 AT1G62740.1
Hop2
stress-inducible protein
Chr4_-_13761603 0.47 AT4G27560.1
AT4G27560
UDP-Glycosyltransferase superfamily protein
Chr2_+_9530365 0.47 AT2G22450.1
RIBA2
riboflavin biosynthesis protein
Chr1_+_29298243 0.47 AT1G77920.1
TGA7
bZIP transcription factor family protein
Chr5_-_8982873 0.47 AT5G25800.2
AT5G25800.1
AT5G25800
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_+_17130186 0.47 AT5G42720.1
AT5G42720
Glycosyl hydrolase family 17 protein
Chr3_-_21156075 0.47 AT3G57150.1
NAP57
homologue of NAP57
Chr3_-_6212551 0.47 AT3G18130.1
RACK1C_AT
receptor for activated C kinase 1C
Chr5_-_15011257 0.47 AT5G37790.1
AT5G37790
Protein kinase superfamily protein
Chr4_+_6745100 0.47 AT4G11040.2
AT4G11040.1
AT4G11040
Protein phosphatase 2C family protein
Chr4_+_994726 0.47 AT4G02280.1
SUS3
sucrose synthase 3
Chr1_+_22737475 0.46 AT1G61620.1
AT1G61620
phosphoinositide binding protein
Chr3_-_22247976 0.46 AT3G60190.1
DL1E
DYNAMIN-like 1E
Chr1_+_4351019 0.46 AT1G12770.1
AT1G12770.2
EMB1586
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_5194214 0.46 AT1G15100.1
RHA2A
RING-H2 finger A2A
Chr3_+_16816721 0.46 AT3G45780.1
PHOT1
phototropin 1
Chr3_-_18718396 0.46 AT3G50440.1
MES10
methylesterase
Chr3_+_20747629 0.46 AT3G55940.1
AT3G55940
Phosphoinositide-specific phospholipase C family protein
Chr1_+_4661682 0.46 AT1G13608.1
AT1G13608
Defensin-like (DEFL) family protein
Chr3_-_20427384 0.46 AT3G55110.1
ABCG18
ABC-2 type transporter family protein
Chr5_+_17973775 0.46 AT5G44575.1
AT5G44575
hypothetical protein
Chr5_+_8863224 0.46 AT5G25460.1
DGR2
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr5_-_6800903 0.46 AT5G20140.1
AT5G20140.2
HBP5
SOUL heme-binding family protein
Chr2_+_13693094 0.46 AT2G32250.4
AT2G32250.2
AT2G32250.8
AT2G32250.7
AT2G32250.5
AT2G32250.3
AT2G32250.1
AT2G32250.6
FRS2
FAR1-related sequence 2
Chr4_+_14073008 0.46 AT4G28480.1
AT4G28480.2
AT4G28480
DNAJ heat shock family protein
Chr5_-_1013678 0.46 AT5G03800.1
EMB175
Pentatricopeptide repeat (PPR) superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G35700

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 4.2 GO:0009819 drought recovery(GO:0009819)
0.4 1.9 GO:0010360 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.3 1.0 GO:0010203 response to very low fluence red light stimulus(GO:0010203)
0.3 3.5 GO:0009608 response to symbiont(GO:0009608)
0.2 0.8 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.2 2.7 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.2 0.7 GO:0010507 negative regulation of autophagy(GO:0010507)
0.2 0.5 GO:0019406 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.2 2.2 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.2 0.5 GO:0072526 pyridine-containing compound catabolic process(GO:0072526)
0.2 0.5 GO:1990258 box C/D snoRNA 3'-end processing(GO:0000494) peptidyl-glutamine methylation(GO:0018364) box C/D snoRNA metabolic process(GO:0033967) box C/D snoRNA processing(GO:0034963) histone glutamine methylation(GO:1990258)
0.2 0.5 GO:0031120 snRNA pseudouridine synthesis(GO:0031120)
0.2 0.5 GO:0009663 plasmodesma organization(GO:0009663)
0.1 4.7 GO:0006012 galactose metabolic process(GO:0006012)
0.1 0.4 GO:0032196 transposition(GO:0032196)
0.1 0.9 GO:0072344 rescue of stalled ribosome(GO:0072344)
0.1 0.4 GO:0006177 GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037)
0.1 0.4 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 0.4 GO:0009915 phloem sucrose loading(GO:0009915)
0.1 1.2 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.1 0.7 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.1 0.4 GO:0051202 phytochromobilin biosynthetic process(GO:0010024) phytochromobilin metabolic process(GO:0051202)
0.1 0.5 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.1 1.8 GO:0005986 sucrose biosynthetic process(GO:0005986)
0.1 0.4 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
0.1 0.4 GO:0051512 positive regulation of unidimensional cell growth(GO:0051512)
0.1 0.3 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 1.0 GO:0015804 neutral amino acid transport(GO:0015804)
0.1 7.1 GO:0009631 cold acclimation(GO:0009631)
0.1 0.7 GO:0046683 response to organophosphorus(GO:0046683)
0.1 0.3 GO:0000349 generation of catalytic spliceosome for first transesterification step(GO:0000349)
0.1 1.8 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 0.3 GO:1903513 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.1 0.9 GO:0051596 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.1 1.4 GO:0006482 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.1 0.4 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.1 0.6 GO:0097502 mannosylation(GO:0097502)
0.1 0.4 GO:0010617 circadian regulation of calcium ion oscillation(GO:0010617)
0.1 1.5 GO:0071329 cellular response to sucrose stimulus(GO:0071329)
0.1 0.3 GO:0034625 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.1 0.6 GO:0043479 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.1 0.8 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.1 0.3 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.3 GO:0035019 somatic stem cell population maintenance(GO:0035019)
0.1 0.3 GO:2000693 positive regulation of seed maturation(GO:2000693)
0.1 0.3 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.1 0.4 GO:1901535 regulation of DNA demethylation(GO:1901535)
0.1 0.9 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.1 0.3 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.1 1.1 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.1 0.3 GO:0006427 histidyl-tRNA aminoacylation(GO:0006427)
0.1 0.2 GO:0071452 cellular response to singlet oxygen(GO:0071452)
0.1 0.5 GO:0070141 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.1 0.4 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.1 0.3 GO:1901562 response to paraquat(GO:1901562)
0.1 0.4 GO:2000576 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.1 0.2 GO:0042351 'de novo' GDP-L-fucose biosynthetic process(GO:0042351)
0.1 0.3 GO:0048205 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.1 0.8 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.1 0.9 GO:0010315 auxin efflux(GO:0010315)
0.1 0.4 GO:0006624 vacuolar protein processing(GO:0006624)
0.1 0.4 GO:0015837 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.1 0.7 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.1 0.4 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.1 0.4 GO:0080117 secondary growth(GO:0080117)
0.1 0.3 GO:0000012 single strand break repair(GO:0000012)
0.1 0.4 GO:0044205 'de novo' UMP biosynthetic process(GO:0044205)
0.1 0.2 GO:0034247 snoRNA splicing(GO:0034247)
0.1 0.1 GO:0042817 pyridoxal metabolic process(GO:0042817)
0.1 0.3 GO:1902975 cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
0.1 0.4 GO:0015846 polyamine transport(GO:0015846)
0.1 2.4 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 0.7 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.1 0.2 GO:0015742 alpha-ketoglutarate transport(GO:0015742)
0.1 0.2 GO:0016118 tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
0.1 0.5 GO:0010098 suspensor development(GO:0010098)
0.1 0.3 GO:0010080 regulation of floral meristem growth(GO:0010080)
0.1 0.3 GO:0001578 microtubule bundle formation(GO:0001578)
0.1 0.5 GO:0046482 para-aminobenzoic acid metabolic process(GO:0046482)
0.1 0.2 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.1 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.1 0.7 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.1 0.1 GO:1902969 mitotic DNA replication(GO:1902969)
0.1 0.3 GO:0008333 lysosomal transport(GO:0007041) endosome to lysosome transport(GO:0008333)
0.1 0.9 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.1 0.3 GO:0000098 sulfur amino acid catabolic process(GO:0000098)
0.1 0.9 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.1 0.3 GO:0033306 phytol metabolic process(GO:0033306)
0.1 0.7 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.1 0.5 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.1 0.5 GO:0009061 anaerobic respiration(GO:0009061)
0.1 0.7 GO:0017157 regulation of exocytosis(GO:0017157)
0.1 0.4 GO:1901401 regulation of tetrapyrrole metabolic process(GO:1901401)
0.1 0.1 GO:0032781 positive regulation of ATPase activity(GO:0032781)
0.1 0.2 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.4 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.1 0.2 GO:0033512 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
0.1 0.7 GO:0045995 regulation of embryonic development(GO:0045995)
0.1 0.3 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.1 0.5 GO:0010065 primary meristem tissue development(GO:0010065)
0.1 0.7 GO:0060261 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.1 0.2 GO:0072502 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.1 0.5 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.1 0.7 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.1 0.3 GO:0070542 response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398)
0.1 0.6 GO:0060321 acceptance of pollen(GO:0060321)
0.1 0.7 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.1 0.1 GO:0040030 regulation of molecular function, epigenetic(GO:0040030) negative regulation of molecular function, epigenetic(GO:0045857)
0.1 0.4 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.1 0.5 GO:0070370 cellular heat acclimation(GO:0070370)
0.1 0.2 GO:0010338 leaf formation(GO:0010338)
0.1 1.2 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.1 0.2 GO:0009945 radial axis specification(GO:0009945)
0.1 0.2 GO:0006023 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.1 0.1 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.5 GO:0033683 nucleotide-excision repair, DNA incision(GO:0033683)
0.0 0.1 GO:0072698 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.0 0.0 GO:0006308 DNA catabolic process(GO:0006308)
0.0 1.2 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.0 1.2 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 0.3 GO:0006145 purine nucleobase catabolic process(GO:0006145)
0.0 0.4 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.3 GO:0046865 isoprenoid transport(GO:0046864) terpenoid transport(GO:0046865)
0.0 1.0 GO:0010167 response to nitrate(GO:0010167)
0.0 0.1 GO:0042353 fucose biosynthetic process(GO:0042353)
0.0 0.2 GO:0071963 establishment or maintenance of cell polarity regulating cell shape(GO:0071963) regulation of establishment or maintenance of cell polarity regulating cell shape(GO:2000769)
0.0 0.2 GO:0006103 2-oxoglutarate metabolic process(GO:0006103)
0.0 0.1 GO:0034058 endosomal vesicle fusion(GO:0034058)
0.0 0.9 GO:0015850 organic hydroxy compound transport(GO:0015850)
0.0 0.2 GO:0048578 positive regulation of long-day photoperiodism, flowering(GO:0048578)
0.0 0.3 GO:0031118 rRNA pseudouridine synthesis(GO:0031118)
0.0 0.1 GO:0035606 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
0.0 0.2 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.0 1.3 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.3 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.0 0.5 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 0.2 GO:0016099 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.0 0.1 GO:0015786 UDP-glucose transport(GO:0015786)
0.0 0.5 GO:0031425 chloroplast RNA processing(GO:0031425)
0.0 0.8 GO:0006826 iron ion transport(GO:0006826)
0.0 0.2 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.0 0.1 GO:0061641 CENP-A containing nucleosome assembly(GO:0034080) positive regulation of binding(GO:0051099) regulation of DNA binding(GO:0051101) CENP-A containing chromatin organization(GO:0061641)
0.0 0.8 GO:0051017 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.0 0.5 GO:0030522 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.0 0.2 GO:0010508 positive regulation of autophagy(GO:0010508)
0.0 1.1 GO:0042026 protein refolding(GO:0042026)
0.0 0.1 GO:0046156 siroheme biosynthetic process(GO:0019354) siroheme metabolic process(GO:0046156)
0.0 0.3 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.0 0.3 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.4 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.0 0.2 GO:0007142 male meiosis II(GO:0007142)
0.0 0.1 GO:0071034 nuclear mRNA surveillance of mRNA 3'-end processing(GO:0071031) CUT catabolic process(GO:0071034) CUT metabolic process(GO:0071043) nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription(GO:0071049)
0.0 0.4 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.0 0.5 GO:0009226 nucleotide-sugar biosynthetic process(GO:0009226)
0.0 0.5 GO:0009641 shade avoidance(GO:0009641)
0.0 0.3 GO:0010188 response to microbial phytotoxin(GO:0010188)
0.0 0.6 GO:0031167 rRNA methylation(GO:0031167)
0.0 0.2 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.0 0.9 GO:0043044 ATP-dependent chromatin remodeling(GO:0043044)
0.0 0.1 GO:0051098 regulation of binding(GO:0051098)
0.0 0.5 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.0 0.2 GO:0051693 negative regulation of actin filament depolymerization(GO:0030835) barbed-end actin filament capping(GO:0051016) actin filament capping(GO:0051693)
0.0 0.2 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.2 GO:0048564 photosystem I assembly(GO:0048564)
0.0 0.2 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.0 0.2 GO:1900425 negative regulation of defense response to bacterium(GO:1900425)
0.0 0.1 GO:0046085 adenosine metabolic process(GO:0046085)
0.0 0.1 GO:0048480 style development(GO:0048479) stigma development(GO:0048480)
0.0 0.2 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.7 GO:0009593 detection of chemical stimulus(GO:0009593)
0.0 0.2 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0 0.1 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.3 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.0 1.0 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.0 0.3 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.0 1.1 GO:0035304 regulation of protein dephosphorylation(GO:0035304)
0.0 0.1 GO:0071486 cellular response to high light intensity(GO:0071486)
0.0 0.7 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 0.3 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 1.3 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.0 0.3 GO:0010088 phloem development(GO:0010088)
0.0 0.3 GO:1902074 response to salt(GO:1902074)
0.0 0.3 GO:1902183 regulation of shoot apical meristem development(GO:1902183)
0.0 0.1 GO:0010480 microsporocyte differentiation(GO:0010480)
0.0 0.6 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862)
0.0 0.1 GO:2000058 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.0 0.1 GO:0051346 negative regulation of hydrolase activity(GO:0051346)
0.0 0.1 GO:0016578 histone deubiquitination(GO:0016578)
0.0 0.3 GO:0043155 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.0 0.0 GO:0010288 response to lead ion(GO:0010288)
0.0 0.1 GO:0034308 primary alcohol metabolic process(GO:0034308)
0.0 0.1 GO:0071569 protein ufmylation(GO:0071569)
0.0 1.1 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 0.1 GO:0042450 arginine biosynthetic process via ornithine(GO:0042450)
0.0 1.1 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 0.5 GO:0008360 regulation of cell shape(GO:0008360)
0.0 0.1 GO:0080005 photosystem stoichiometry adjustment(GO:0080005)
0.0 0.4 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.3 GO:0019856 pyrimidine nucleobase biosynthetic process(GO:0019856)
0.0 0.5 GO:0030244 cellulose biosynthetic process(GO:0030244)
0.0 0.2 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.0 0.7 GO:0080022 primary root development(GO:0080022)
0.0 0.3 GO:0051446 positive regulation of meiotic cell cycle(GO:0051446)
0.0 0.7 GO:0042631 cellular response to water deprivation(GO:0042631) cellular response to water stimulus(GO:0071462)
0.0 0.1 GO:0010483 pollen tube reception(GO:0010483) intraspecies interaction between organisms(GO:0051703)
0.0 0.2 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.2 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.3 GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic(GO:0090502)
0.0 0.2 GO:0030490 maturation of SSU-rRNA(GO:0030490)
0.0 0.3 GO:0010076 maintenance of floral meristem identity(GO:0010076)
0.0 0.1 GO:0010219 regulation of vernalization response(GO:0010219)
0.0 0.1 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.0 0.3 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.0 0.1 GO:0001738 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.0 0.1 GO:0015802 basic amino acid transport(GO:0015802)
0.0 0.2 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.1 GO:1902475 L-alpha-amino acid transmembrane transport(GO:1902475)
0.0 1.0 GO:0048278 vesicle docking(GO:0048278)
0.0 0.2 GO:0070129 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.0 0.1 GO:0006285 base-excision repair, AP site formation(GO:0006285)
0.0 0.1 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.0 0.2 GO:0048766 root hair initiation(GO:0048766)
0.0 0.1 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.0 0.2 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.1 GO:0006906 vesicle fusion(GO:0006906)
0.0 0.2 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.0 GO:0034767 positive regulation of transmembrane transport(GO:0034764) positive regulation of ion transmembrane transport(GO:0034767)
0.0 0.3 GO:0045927 positive regulation of growth(GO:0045927)
0.0 0.5 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 0.6 GO:0006914 autophagy(GO:0006914)
0.0 0.5 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 0.1 GO:0000578 embryonic axis specification(GO:0000578)
0.0 1.2 GO:0016036 cellular response to phosphate starvation(GO:0016036)
0.0 0.1 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 1.5 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.2 GO:0006265 DNA topological change(GO:0006265)
0.0 0.1 GO:0051123 RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123)
0.0 0.1 GO:0042360 vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360)
0.0 1.9 GO:0080167 response to karrikin(GO:0080167)
0.0 0.1 GO:0046471 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.0 0.8 GO:0034605 cellular response to heat(GO:0034605)
0.0 0.1 GO:0019375 galactolipid biosynthetic process(GO:0019375)
0.0 0.4 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.4 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.0 1.1 GO:0006413 translational initiation(GO:0006413)
0.0 0.2 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.1 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.0 0.2 GO:0010109 regulation of photosynthesis(GO:0010109)
0.0 0.0 GO:0033258 plastid DNA metabolic process(GO:0033258) plastid DNA replication(GO:0033259)
0.0 0.5 GO:0009247 glycolipid biosynthetic process(GO:0009247)
0.0 0.1 GO:1903959 regulation of anion channel activity(GO:0010359) regulation of anion transmembrane transport(GO:1903959)
0.0 0.3 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 0.6 GO:0042752 regulation of circadian rhythm(GO:0042752)
0.0 0.1 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.0 0.3 GO:2000030 regulation of response to red or far red light(GO:2000030)
0.0 0.1 GO:0032527 protein exit from endoplasmic reticulum(GO:0032527)
0.0 0.3 GO:0007030 Golgi organization(GO:0007030)
0.0 0.3 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.2 GO:0009098 leucine biosynthetic process(GO:0009098)
0.0 0.3 GO:0045493 xylan catabolic process(GO:0045493)
0.0 0.1 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 0.2 GO:0010214 seed coat development(GO:0010214)
0.0 0.4 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.3 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 0.1 GO:0051592 response to calcium ion(GO:0051592)
0.0 1.1 GO:0010431 seed maturation(GO:0010431)
0.0 0.1 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.0 1.1 GO:0016579 protein deubiquitination(GO:0016579)
0.0 0.1 GO:0045116 protein neddylation(GO:0045116)
0.0 0.0 GO:0051211 nucleolus organization(GO:0007000) anisotropic cell growth(GO:0051211)
0.0 0.1 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.0 GO:0046203 spermidine catabolic process(GO:0046203)
0.0 0.2 GO:0009688 abscisic acid biosynthetic process(GO:0009688) apocarotenoid biosynthetic process(GO:0043289) tertiary alcohol biosynthetic process(GO:1902645)
0.0 0.1 GO:0010540 basipetal auxin transport(GO:0010540)
0.0 0.2 GO:1905177 tracheary element differentiation(GO:1905177)
0.0 0.4 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 0.2 GO:0033674 positive regulation of kinase activity(GO:0033674)
0.0 0.2 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.0 0.2 GO:0043248 proteasome assembly(GO:0043248)
0.0 0.0 GO:0019563 alditol catabolic process(GO:0019405) glycerol catabolic process(GO:0019563)
0.0 0.7 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.1 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.3 GO:0010091 trichome branching(GO:0010091)
0.0 0.4 GO:0090305 nucleic acid phosphodiester bond hydrolysis(GO:0090305)
0.0 0.2 GO:0042773 ATP synthesis coupled electron transport(GO:0042773)
0.0 0.0 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.0 0.1 GO:1901959 positive regulation of cutin biosynthetic process(GO:1901959)
0.0 0.1 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.0 0.1 GO:0015936 coenzyme A metabolic process(GO:0015936)
0.0 0.1 GO:0006771 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231)
0.0 0.2 GO:0071230 cellular response to amino acid stimulus(GO:0071230)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0031356 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.2 0.5 GO:0005775 vacuolar lumen(GO:0005775)
0.2 0.5 GO:0034457 Mpp10 complex(GO:0034457)
0.1 0.8 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.1 0.4 GO:1990112 RQC complex(GO:1990112)
0.1 0.6 GO:0031429 box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588)
0.1 0.1 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.1 0.4 GO:0042788 polysomal ribosome(GO:0042788)
0.1 1.0 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.1 0.8 GO:0005784 Sec61 translocon complex(GO:0005784)
0.1 0.3 GO:0032299 ribonuclease H2 complex(GO:0032299)
0.1 0.7 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.1 0.4 GO:0030286 dynein complex(GO:0030286)
0.1 0.2 GO:0009501 amyloplast(GO:0009501)
0.1 0.3 GO:0005655 nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681)
0.1 0.3 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130) clathrin coat of coated pit(GO:0030132)
0.1 0.3 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.1 0.3 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.1 0.3 GO:0010007 magnesium chelatase complex(GO:0010007)
0.1 0.3 GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541)
0.1 0.2 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.1 0.4 GO:0005845 mRNA cap binding complex(GO:0005845)
0.1 0.4 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.1 0.3 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.1 0.2 GO:0016328 lateral plasma membrane(GO:0016328)
0.1 0.3 GO:0016363 nuclear matrix(GO:0016363)
0.1 0.4 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.1 0.4 GO:0005884 actin filament(GO:0005884)
0.1 0.3 GO:0030906 retromer, cargo-selective complex(GO:0030906)
0.0 1.0 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 0.3 GO:0071006 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.0 0.2 GO:0034515 proteasome storage granule(GO:0034515)
0.0 2.6 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.6 GO:0005682 U5 snRNP(GO:0005682)
0.0 0.1 GO:0045178 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.0 0.4 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.3 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.0 1.1 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.4 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.0 0.8 GO:0031970 organelle envelope lumen(GO:0031970)
0.0 0.1 GO:0031021 interphase microtubule organizing center(GO:0031021)
0.0 0.2 GO:0032153 cell division site(GO:0032153)
0.0 0.5 GO:0045298 tubulin complex(GO:0045298)
0.0 0.3 GO:0071556 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.4 GO:0072546 ER membrane protein complex(GO:0072546)
0.0 0.2 GO:0005844 polysome(GO:0005844)
0.0 0.2 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.0 0.7 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 0.1 GO:0031372 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.0 0.1 GO:0070505 pollen coat(GO:0070505)
0.0 0.6 GO:0005686 U2 snRNP(GO:0005686)
0.0 0.1 GO:0046695 SLIK (SAGA-like) complex(GO:0046695)
0.0 0.3 GO:0030125 clathrin vesicle coat(GO:0030125)
0.0 1.8 GO:0009524 phragmoplast(GO:0009524)
0.0 0.2 GO:0016514 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.3 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.0 0.6 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.3 GO:0005675 holo TFIIH complex(GO:0005675) carboxy-terminal domain protein kinase complex(GO:0032806)
0.0 0.4 GO:0000347 THO complex(GO:0000347)
0.0 0.2 GO:0000124 SAGA complex(GO:0000124)
0.0 1.5 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.3 GO:0005880 nuclear microtubule(GO:0005880)
0.0 0.1 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.7 GO:0008287 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 0.5 GO:0031306 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.0 7.8 GO:0005730 nucleolus(GO:0005730)
0.0 0.1 GO:0030897 HOPS complex(GO:0030897)
0.0 0.2 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 0.7 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.4 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.0 5.1 GO:0009941 chloroplast envelope(GO:0009941)
0.0 0.3 GO:0055028 cortical microtubule(GO:0055028)
0.0 0.2 GO:0005663 DNA replication factor C complex(GO:0005663)
0.0 0.2 GO:0005750 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.0 0.6 GO:0005635 nuclear envelope(GO:0005635)
0.0 0.3 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.0 11.3 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.2 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.3 GO:0031903 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 1.1 GO:0016604 nuclear body(GO:0016604)
0.0 1.5 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 0.5 GO:0000145 exocyst(GO:0000145)
0.0 0.0 GO:0070652 HAUS complex(GO:0070652)
0.0 1.7 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.1 GO:0000786 nucleosome(GO:0000786)
0.0 0.3 GO:0005684 U2-type spliceosomal complex(GO:0005684)
0.0 0.4 GO:0009504 cell plate(GO:0009504)
0.0 0.2 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.1 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 31.3 GO:0005829 cytosol(GO:0005829)
0.0 0.1 GO:0001673 male germ cell nucleus(GO:0001673)
0.0 0.2 GO:0005741 mitochondrial outer membrane(GO:0005741)
0.0 0.1 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 4.9 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.4 1.4 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.3 1.5 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.3 1.2 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.3 0.8 GO:0070678 preprotein binding(GO:0070678)
0.2 0.7 GO:0046524 sucrose-phosphate synthase activity(GO:0046524)
0.2 2.4 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.2 1.2 GO:0019904 protein domain specific binding(GO:0019904)
0.2 1.9 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.2 0.6 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.2 1.6 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.2 0.5 GO:0019003 GDP binding(GO:0019003)
0.2 0.3 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.2 5.1 GO:0048029 monosaccharide binding(GO:0048029)
0.2 0.5 GO:1990259 protein-glutamine N-methyltransferase activity(GO:0036009) histone-glutamine methyltransferase activity(GO:1990259)
0.2 0.5 GO:0005080 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.2 0.8 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.1 0.4 GO:0004462 lactoylglutathione lyase activity(GO:0004462)
0.1 0.6 GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103)
0.1 1.6 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.1 0.6 GO:0016433 rRNA (adenine) methyltransferase activity(GO:0016433)
0.1 1.1 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.1 1.1 GO:0050307 sucrose-phosphate phosphatase activity(GO:0050307)
0.1 0.4 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.1 0.5 GO:0008686 GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686)
0.1 0.5 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215) UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002)
0.1 0.4 GO:0008311 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.1 0.6 GO:0030371 translation repressor activity(GO:0030371)
0.1 0.4 GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity(GO:0003864)
0.1 0.9 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.7 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.1 0.8 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 0.7 GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)(GO:0016703)
0.1 0.3 GO:0004438 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 0.5 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.1 1.6 GO:0016018 cyclosporin A binding(GO:0016018)
0.1 0.4 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
0.1 0.3 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.1 0.3 GO:0008936 nicotinamidase activity(GO:0008936)
0.1 0.3 GO:0050377 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.1 1.2 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.1 0.4 GO:0035516 oxidative DNA demethylase activity(GO:0035516)
0.1 0.3 GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor(GO:0016726)
0.1 0.7 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.1 1.7 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 0.3 GO:0019776 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.1 0.3 GO:0045430 chalcone isomerase activity(GO:0045430)
0.1 0.2 GO:0003995 acyl-CoA dehydrogenase activity(GO:0003995)
0.1 0.4 GO:0015203 polyamine transmembrane transporter activity(GO:0015203)
0.1 1.0 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.1 0.3 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.1 0.3 GO:0004821 histidine-tRNA ligase activity(GO:0004821)
0.1 0.3 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.1 0.6 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 2.8 GO:0019187 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.1 0.4 GO:0004322 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.1 0.9 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.1 0.4 GO:0045505 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.1 0.2 GO:0050577 GDP-L-fucose synthase activity(GO:0050577)
0.1 0.3 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.1 0.2 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.1 0.4 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.1 0.2 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.1 0.5 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 0.5 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.1 0.6 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.4 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.1 0.2 GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity(GO:0008534)
0.1 0.8 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.1 0.4 GO:0004416 hydroxyacylglutathione hydrolase activity(GO:0004416)
0.1 2.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 0.3 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.5 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.1 0.9 GO:0030674 protein binding, bridging(GO:0030674)
0.1 0.2 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.1 0.4 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.1 0.7 GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity(GO:0043878)
0.1 0.2 GO:0015245 fatty acid transporter activity(GO:0015245)
0.1 0.2 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 0.2 GO:0016748 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
0.1 0.5 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.1 0.2 GO:0008174 mRNA methyltransferase activity(GO:0008174)
0.1 0.6 GO:0032453 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 0.3 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.1 0.4 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.1 0.4 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.1 1.5 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.1 0.3 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 0.3 GO:0003680 AT DNA binding(GO:0003680)
0.1 0.5 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.1 0.4 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.1 0.3 GO:0018488 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 0.8 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 0.7 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.0 0.3 GO:0047627 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.0 0.2 GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity(GO:0035242)
0.0 0.1 GO:0016906 sterol 3-beta-glucosyltransferase activity(GO:0016906)
0.0 0.6 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 0.4 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.0 0.2 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.0 0.4 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.0 0.9 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.0 0.1 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
0.0 0.4 GO:0043995 histone acetyltransferase activity (H4-K5 specific)(GO:0043995)
0.0 0.1 GO:0043140 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.0 0.2 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 2.3 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.2 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.0 0.6 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.0 0.6 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.5 GO:0002020 protease binding(GO:0002020)
0.0 0.2 GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor(GO:0016670)
0.0 0.2 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.0 0.5 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.2 GO:0060090 binding, bridging(GO:0060090)
0.0 0.2 GO:0010296 prenylcysteine methylesterase activity(GO:0010296)
0.0 0.3 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.0 0.4 GO:0017022 myosin binding(GO:0017022)
0.0 0.3 GO:0080025 phosphatidylinositol-3-phosphate binding(GO:0032266) phosphatidylinositol-3,5-bisphosphate binding(GO:0080025)
0.0 0.3 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.1 GO:0034513 box H/ACA snoRNA binding(GO:0034513)
0.0 0.3 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.3 GO:0003989 acetyl-CoA carboxylase activity(GO:0003989)
0.0 1.2 GO:0051087 chaperone binding(GO:0051087)
0.0 0.1 GO:0010011 auxin binding(GO:0010011)
0.0 0.1 GO:0070818 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
0.0 0.3 GO:0009922 fatty acid elongase activity(GO:0009922)
0.0 0.2 GO:0009884 cytokinin receptor activity(GO:0009884)
0.0 0.3 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.1 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.0 0.3 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.5 GO:0030515 snoRNA binding(GO:0030515)
0.0 0.3 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.5 GO:0016157 sucrose synthase activity(GO:0016157)
0.0 0.6 GO:0030276 clathrin binding(GO:0030276)
0.0 1.1 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 0.1 GO:0051740 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.0 0.3 GO:0035198 miRNA binding(GO:0035198)
0.0 0.4 GO:0017025 TBP-class protein binding(GO:0017025)
0.0 0.1 GO:0047714 galactolipase activity(GO:0047714)
0.0 0.8 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.1 GO:0004096 catalase activity(GO:0004096)
0.0 0.4 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 0.5 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.4 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.0 0.4 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 0.2 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.3 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.2 GO:0090079 translation activator activity(GO:0008494) translation regulator activity, nucleic acid binding(GO:0090079) mitochondrial ribosome binding(GO:0097177)
0.0 0.1 GO:0004049 anthranilate synthase activity(GO:0004049)
0.0 0.2 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.1 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.3 GO:1990939 ATP-dependent microtubule motor activity(GO:1990939)
0.0 0.7 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.2 GO:0030291 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.0 0.1 GO:0019210 kinase inhibitor activity(GO:0019210)
0.0 0.1 GO:0004424 imidazoleglycerol-phosphate dehydratase activity(GO:0004424)
0.0 0.1 GO:0000064 L-ornithine transmembrane transporter activity(GO:0000064) azole transmembrane transporter activity(GO:1901474)
0.0 0.1 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.1 GO:0019781 NEDD8 activating enzyme activity(GO:0019781)
0.0 0.3 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.1 GO:0004325 ferrochelatase activity(GO:0004325)
0.0 0.1 GO:0016882 cyclo-ligase activity(GO:0016882)
0.0 0.1 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.0 0.3 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.4 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.1 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 1.2 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 0.2 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 1.1 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.3 GO:0015114 inositol hexakisphosphate binding(GO:0000822) phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.9 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.1 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.0 0.3 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.1 GO:0019172 glyoxalase III activity(GO:0019172)
0.0 0.2 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.0 0.9 GO:0080043 quercetin 3-O-glucosyltransferase activity(GO:0080043)
0.0 0.4 GO:0031491 nucleosome binding(GO:0031491)
0.0 1.3 GO:0043621 protein self-association(GO:0043621)
0.0 0.2 GO:0000210 NAD+ diphosphatase activity(GO:0000210)
0.0 0.4 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.2 GO:0017136 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.0 1.1 GO:0016879 ligase activity, forming carbon-nitrogen bonds(GO:0016879)
0.0 0.1 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.5 GO:0043022 ribosome binding(GO:0043022)
0.0 0.3 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.1 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 0.2 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.2 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 0.1 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.0 0.3 GO:0004525 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)
0.0 0.3 GO:0016776 phosphotransferase activity, phosphate group as acceptor(GO:0016776)
0.0 1.1 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 0.2 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.1 GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity(GO:0051903)
0.0 0.2 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.0 1.2 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.6 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.1 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 0.1 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.0 0.1 GO:0046592 polyamine oxidase activity(GO:0046592)
0.0 0.8 GO:0008094 DNA-dependent ATPase activity(GO:0008094)
0.0 0.7 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 0.1 GO:0009011 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.0 1.1 GO:0101005 ubiquitinyl hydrolase activity(GO:0101005)
0.0 0.3 GO:0080031 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.0 0.4 GO:0005267 potassium channel activity(GO:0005267)
0.0 0.1 GO:0031386 protein tag(GO:0031386)
0.0 0.4 GO:0019888 protein phosphatase regulator activity(GO:0019888)
0.0 0.6 GO:0035091 phosphatidylinositol binding(GO:0035091)
0.0 0.2 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.2 GO:0003996 acyl-CoA ligase activity(GO:0003996) decanoate--CoA ligase activity(GO:0102391)
0.0 0.5 GO:0016769 transferase activity, transferring nitrogenous groups(GO:0016769)
0.0 0.3 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.9 GO:0051082 unfolded protein binding(GO:0051082)
0.0 0.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.1 GO:0043495 protein anchor(GO:0043495)
0.0 0.1 GO:0016208 AMP binding(GO:0016208)
0.0 0.3 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.2 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.1 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.1 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.0 0.4 GO:0005048 signal sequence binding(GO:0005048)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 PID SHP2 PATHWAY SHP2 signaling
0.1 0.3 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.1 0.2 PID ECADHERIN NASCENT AJ PATHWAY E-cadherin signaling in the nascent adherens junction
0.1 0.2 PID TAP63 PATHWAY Validated transcriptional targets of TAp63 isoforms
0.1 0.2 PID MYC PATHWAY C-MYC pathway
0.1 0.4 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.2 PID P53 REGULATION PATHWAY p53 pathway
0.0 0.4 PID CXCR4 PATHWAY CXCR4-mediated signaling events
0.0 0.4 PID ATR PATHWAY ATR signaling pathway
0.0 0.4 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.0 0.0 PID UPA UPAR PATHWAY Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling
0.0 0.2 PID P73PATHWAY p73 transcription factor network
0.0 0.3 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.0 0.1 PID PTP1B PATHWAY Signaling events mediated by PTP1B
0.0 0.2 PID RAC1 PATHWAY RAC1 signaling pathway
0.0 0.1 PID CMYB PATHWAY C-MYB transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 2.5 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.2 0.7 REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR Genes involved in Downstream signaling of activated FGFR
0.2 0.7 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.1 0.6 REACTOME L1CAM INTERACTIONS Genes involved in L1CAM interactions
0.1 0.3 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.1 0.5 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.1 0.2 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.1 0.2 REACTOME BASE EXCISION REPAIR Genes involved in Base Excision Repair
0.1 0.5 REACTOME SIGNALING BY RHO GTPASES Genes involved in Signaling by Rho GTPases
0.1 0.3 REACTOME PI METABOLISM Genes involved in PI Metabolism
0.1 0.2 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.1 0.1 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.0 0.2 REACTOME GLUCOSE TRANSPORT Genes involved in Glucose transport
0.0 0.3 REACTOME POL SWITCHING Genes involved in Polymerase switching
0.0 0.4 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.1 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.0 0.1 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism
0.0 0.1 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.0 0.1 REACTOME SIGNALING BY SCF KIT Genes involved in Signaling by SCF-KIT
0.0 0.1 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes