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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G35530
Z-value: 1.26
Transcription factors associated with AT2G35530
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G35530
|
AT2G35530 | basic region/leucine zipper transcription factor 16 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP16 | arTal_v1_Chr2_-_14926609_14926609 | 0.46 | 9.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 3.74 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 3.50 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 3.28 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 3.26 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 3.10 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 2.93 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 2.90 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 2.59 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr5_+_5211719_5211719 Show fit | 2.56 |
AT5G15970.1
|
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 2.29 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G35530
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.2 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.2 | 10.3 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.2 | 6.1 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.7 | 3.7 | GO:0043279 | response to caffeine(GO:0031000) response to alkaloid(GO:0043279) |
| 0.1 | 3.4 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 3.1 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.1 | 2.9 | GO:0048510 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
| 0.1 | 2.8 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.9 | 2.7 | GO:0010266 | response to vitamin B1(GO:0010266) |
| 0.8 | 2.3 | GO:0006659 | phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 4.4 | GO:0031353 | intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357) |
| 0.0 | 4.0 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.1 | 3.6 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.1 | 3.1 | GO:0005770 | late endosome(GO:0005770) |
| 0.1 | 2.8 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 2.7 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 2.4 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.0 | 2.2 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 1.9 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 1.8 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 6.5 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.5 | 3.7 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
| 0.7 | 3.4 | GO:0015186 | L-glutamine transmembrane transporter activity(GO:0015186) |
| 0.1 | 3.4 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 3.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 3.2 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.1 | 2.8 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.4 | 2.7 | GO:0080041 | ADP-sugar diphosphatase activity(GO:0019144) ADP-ribose pyrophosphohydrolase activity(GO:0080041) |
| 0.2 | 2.6 | GO:0004430 | 1-phosphatidylinositol 4-kinase activity(GO:0004430) |
| 0.0 | 2.5 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.0 | 0.0 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.1 | 0.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.2 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
| 0.0 | 0.1 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |