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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G32460
Z-value: 0.61
Transcription factors associated with AT2G32460
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G32460
|
AT2G32460 | myb domain protein 101 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB101 | arTal_v1_Chr2_-_13784471_13784483 | 0.60 | 2.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 0.92 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr5_+_17760865_17760865 Show fit | 0.65 |
AT5G44130.1
|
FASCICLIN-like arabinogalactan protein 13 precursor |
|
| arTal_v1_Chr3_+_5692607_5692607 Show fit | 0.58 |
AT3G16720.1
|
TOXICOS EN LEVADURA 2 |
|
| arTal_v1_Chr5_-_25843555_25843555 Show fit | 0.57 |
AT5G64660.1
|
CYS, MET, PRO, and GLY protein 2 |
|
| arTal_v1_Chr4_-_12339967_12339967 Show fit | 0.57 |
AT4G23690.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr2_-_16111911_16111911 Show fit | 0.54 |
AT2G38480.1
|
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr5_-_23301689_23301689 Show fit | 0.52 |
AT5G57530.1
|
xyloglucan endotransglucosylase/hydrolase 12 |
|
| arTal_v1_Chr4_-_947075_947085 Show fit | 0.48 |
AT4G02130.2
AT4G02130.3 |
galacturonosyltransferase 6 |
|
| arTal_v1_Chr4_-_947249_947249 Show fit | 0.44 |
AT4G02130.1
|
galacturonosyltransferase 6 |
|
| arTal_v1_Chr3_-_17910736_17910738 Show fit | 0.44 |
AT3G48360.3
AT3G48360.1 AT3G48360.2 |
BTB and TAZ domain protein 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G32460
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 0.6 | GO:0033321 | homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506) |
| 0.1 | 0.6 | GO:0009807 | lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807) |
| 0.0 | 0.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 0.5 | GO:0009901 | anther dehiscence(GO:0009901) |
| 0.0 | 0.5 | GO:0001678 | cellular glucose homeostasis(GO:0001678) |
| 0.0 | 0.5 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.1 | 0.4 | GO:0051973 | positive regulation of telomerase activity(GO:0051973) |
| 0.1 | 0.3 | GO:0048442 | sepal development(GO:0048442) flower calyx development(GO:0048464) |
| 0.1 | 0.3 | GO:0006690 | icosanoid metabolic process(GO:0006690) fatty acid derivative metabolic process(GO:1901568) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.0 | 0.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.3 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.2 | GO:0005719 | nuclear euchromatin(GO:0005719) |
| 0.0 | 0.2 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
| 0.0 | 0.2 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 0.1 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 0.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 0.5 | GO:0052739 | phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740) |
| 0.1 | 0.5 | GO:0005536 | glucose binding(GO:0005536) mannokinase activity(GO:0019158) |
| 0.0 | 0.5 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
| 0.0 | 0.5 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 0.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 0.4 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 0.4 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
| 0.1 | 0.3 | GO:0045140 | inositol phosphoceramide synthase activity(GO:0045140) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |