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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G31220

Z-value: 1.11

Transcription factors associated with AT2G31220

Gene Symbol Gene ID Gene Info
AT2G31220
AT2G31220 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT2G31220arTal_v1_Chr2_+_13303073_13303073-0.165.8e-01Click!

Activity profile of AT2G31220 motif

Sorted Z-values of AT2G31220 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_8589754 1.15 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr4_-_14002069 1.08 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
EXPB3
expansin B3
Chr5_-_19036938 0.97 AT5G46890.1
AT5G46890
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_7086873 0.97 AT1G20440.1
COR47
cold-regulated 47
Chr2_+_14003128 0.91 AT2G32990.1
GH9B8
glycosyl hydrolase 9B8
Chr3_+_11252807 0.90 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr1_-_7089606 0.85 AT1G20450.1
AT1G20450.2
ERD10
Dehydrin family protein
Chr5_-_19040456 0.84 AT5G46900.1
AT5G46900
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_8501542 0.81 AT1G24020.1
MLP423
MLP-like protein 423
Chr2_+_9592956 0.80 AT2G22590.1
AT2G22590
UDP-Glycosyltransferase superfamily protein
Chr1_-_8502065 0.79 AT1G24020.2
MLP423
MLP-like protein 423
Chr5_+_16815310 0.78 AT5G42050.1
AT5G42050
DCD (Development and Cell Death) domain protein
Chr3_+_17949416 0.75 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_4760957 0.71 AT1G13930.1
AT1G13930.2
AT1G13930.3
AT1G13930
oleosin-B3-like protein
Chr1_+_28776861 0.70 AT1G76680.2
OPR1
12-oxophytodienoate reductase 1
Chr1_+_28776626 0.70 AT1G76680.1
OPR1
12-oxophytodienoate reductase 1
Chr2_+_15059763 0.69 AT2G35860.1
FLA16
FASCICLIN-like arabinogalactan protein 16 precursor
Chr1_-_15607966 0.69 AT1G41830.1
SKS6
SKU5-similar 6
Chr2_+_19109513 0.68 AT2G46535.1
AT2G46535
hypothetical protein
Chr5_-_23707003 0.65 AT5G58670.1
PLC1
phospholipase C1
Chr1_-_30352208 0.65 AT1G80760.1
NIP6%3B1
NOD26-like intrinsic protein 6;1
Chr1_-_27155793 0.64 AT1G72160.1
AT1G72160
Sec14p-like phosphatidylinositol transfer family protein
Chr5_-_22312832 0.63 AT5G54960.1
PDC2
pyruvate decarboxylase-2
Chr3_-_1758807 0.63 AT3G05890.1
RCI2B
Low temperature and salt responsive protein family
Chr5_-_14920025 0.62 AT5G37550.1
AT5G37550
hypothetical protein
Chr4_+_15401640 0.61 AT4G31840.1
ENODL15
early nodulin-like protein 15
Chr2_+_17592038 0.61 AT2G42220.1
AT2G42220
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr3_-_5954091 0.61 AT3G17390.1
MTO3
S-adenosylmethionine synthetase family protein
Chr1_-_24139303 0.59 AT1G64980.3
AT1G64980.2
AT1G64980.1
CDI
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_21651626 0.58 AT5G53370.1
AT5G53370.2
PMEPCRF
pectin methylesterase PCR fragment F
Chr5_-_26804249 0.58 AT5G67180.1
AT5G67180.3
AT5G67180.4
AT5G67180.2
TOE3
target of early activation tagged (EAT) 3
Chr2_-_16573692 0.57 AT2G39730.1
AT2G39730.2
RCA
rubisco activase
Chr2_-_16573519 0.57 AT2G39730.3
RCA
rubisco activase
Chr5_-_8916856 0.57 AT5G25610.1
RD22
BURP domain-containing protein
Chr2_-_8899835 0.57 AT2G20630.2
AT2G20630.1
PIA1
PP2C induced by AVRRPM1
Chr1_-_26293173 0.56 AT1G69830.1
AMY3
alpha-amylase-like 3
Chr3_+_8743113 0.56 AT3G24190.1
AT3G24190
Protein kinase superfamily protein
Chr5_+_3509833 0.56 AT5G11060.1
KNAT4
homeobox protein knotted-1-like 4
Chr4_-_17181261 0.55 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr2_-_16237280 0.55 AT2G38870.1
AT2G38870
Serine protease inhibitor, potato inhibitor I-type family protein
Chr4_-_17181466 0.55 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr1_-_19385533 0.55 AT1G52100.1
AT1G52100.3
AT1G52100.4
AT1G52100.2
AT1G52100.5
AT1G52100
Mannose-binding lectin superfamily protein
Chr4_+_14304921 0.54 AT4G29020.2
AT4G29020.1
AT4G29020
glycine-rich protein
Chr3_-_21303230 0.54 AT3G57540.1
AT3G57540
Remorin family protein
Chr1_+_28032562 0.54 AT1G74640.1
AT1G74640
alpha/beta-Hydrolases superfamily protein
Chr1_-_1349478 0.53 AT1G04800.1
AT1G04800
glycine-rich protein
Chr3_+_19417372 0.53 AT3G52370.2
AT3G52370.1
FLA15
FASCICLIN-like arabinogalactan protein 15 precursor
Chr5_-_23127724 0.52 AT5G57123.1
AT5G57123
hypothetical protein
Chr5_+_25191860 0.51 AT5G62720.2
AT5G62720
Integral membrane HPP family protein
Chr2_+_873506 0.51 AT2G02990.1
RNS1
ribonuclease 1
Chr2_-_17472984 0.50 AT2G41870.1
AT2G41870
Remorin family protein
Chr5_+_25191402 0.49 AT5G62720.1
AT5G62720
Integral membrane HPP family protein
Chr5_-_17456657 0.49 AT5G43440.1
AT5G43440.2
AT5G43440
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_-_6350832 0.48 AT3G18490.1
ASPG1
Eukaryotic aspartyl protease family protein
Chr4_+_17388649 0.48 AT4G36900.1
RAP2.10
related to AP2 10
Chr5_-_315405 0.48 AT5G01820.1
SR1
serine/threonine protein kinase 1
Chr5_-_16195751 0.47 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
Chr5_+_1984823 0.47 AT5G06510.6
AT5G06510.5
AT5G06510.4
AT5G06510.1
AT5G06510.3
NF-YA10
nuclear factor Y, subunit A10
Chr2_-_12415661 0.47 AT2G28900.1
OEP16-1
outer plastid envelope protein 16-1
Chr1_-_7105869 0.46 AT1G20510.2
AT1G20510.3
AT1G20510.1
OPCL1
OPC-8:0 CoA ligase1
Chr5_+_22873666 0.46 AT5G56500.2
AT5G56500.1
Cpn60beta3
TCP-1/cpn60 chaperonin family protein
Chr1_+_11084666 0.46 AT1G31070.1
AT1G31070.2
GlcNAc1pUT1
N-acetylglucosamine-1-phosphate uridylyltransferase 1
Chr2_+_10662190 0.46 AT2G25060.1
ENODL14
early nodulin-like protein 14
Chr5_+_3271767 0.45 AT5G10410.1
AT5G10410
ENTH/ANTH/VHS superfamily protein
Chr1_+_23342211 0.45 AT1G63000.1
NRS/ER
nucleotide-rhamnose synthase/epimerase-reductase
Chr5_-_24932686 0.45 AT5G62070.1
IQD23
IQ-domain 23
Chr1_-_10053117 0.44 AT1G28600.2
AT1G28600.1
AT1G28600
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_10846147 0.44 AT4G20020.1
AT4G20020.2
MORF1
multiple organellar RNA editing factor
Chr1_-_10399873 0.44 AT1G29720.1
AT1G29720
Leucine-rich repeat transmembrane protein kinase
Chr1_-_26415258 0.43 AT1G70140.1
FH8
formin 8
Chr5_-_2963441 0.43 AT5G09540.1
AT5G09540
Chaperone DnaJ-domain superfamily protein
Chr3_+_3069090 0.42 AT3G09980.1
AT3G09980
ankyrin repeat 30A-like protein (DUF662)
Chr2_-_14477520 0.42 AT2G34300.1
AT2G34300.3
AT2G34300
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_+_19271347 0.42 AT3G51930.1
AT3G51930
Transducin/WD40 repeat-like superfamily protein
Chr3_-_21346235 0.42 AT3G57640.1
AT3G57640
Protein kinase superfamily protein
Chr5_+_3799408 0.42 AT5G11790.2
AT5G11790.1
NDL2
N-MYC downregulated-like 2
Chr4_+_12539656 0.41 AT4G24160.1
AT4G24160.2
AT4G24160
alpha/beta-Hydrolases superfamily protein
Chr1_-_10313755 0.40 AT1G29470.2
AT1G29470
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_10314147 0.40 AT1G29470.1
AT1G29470
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_17148496 0.40 AT4G36240.1
GATA7
GATA transcription factor 7
Chr4_+_6907488 0.39 AT4G11370.1
RHA1A
RING-H2 finger A1A
Chr3_-_15871256 0.39 AT3G44110.1
AT3G44110.2
J3
DNAJ homologue 3
Chr5_-_22560461 0.39 AT5G55730.2
AT5G55730.1
FLA1
FASCICLIN-like arabinogalactan 1
Chr5_+_24648528 0.39 AT5G61290.1
AT5G61290
Flavin-binding monooxygenase family protein
Chr1_-_9458176 0.39 AT1G27210.1
AT1G27210
ARM repeat superfamily protein
Chr3_+_815550 0.39 AT3G03440.1
AT3G03440
ARM repeat superfamily protein
Chr2_+_14746236 0.38 AT2G34970.1
AT2G34970
Trimeric LpxA-like enzyme
Chr4_-_18573084 0.38 AT4G40060.1
HB16
homeobox protein 16
Chr1_+_6061895 0.37 AT1G17620.1
AT1G17620
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_-_834289 0.37 AT5G03380.2
AT5G03380
Heavy metal transport/detoxification superfamily protein
Chr1_+_26346488 0.37 AT1G69950.1
AT1G69950

Chr3_-_23328789 0.37 AT3G63140.1
CSP41A
chloroplast stem-loop binding protein of 41 kDa
Chr3_+_9188096 0.36 AT3G25230.1
AT3G25230.2
ROF1
rotamase FKBP 1
Chr4_+_14073008 0.36 AT4G28480.1
AT4G28480.2
AT4G28480
DNAJ heat shock family protein
Chr1_-_11801407 0.35 AT1G32640.1
MYC2
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr5_-_990630 0.35 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_-_25480431 0.35 AT1G67950.2
AT1G67950.1
AT1G67950.3
AT1G67950
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_-_18834834 0.35 AT3G50685.1
AT3G50685
anti-muellerian hormone type-2 receptor
Chr2_-_17992047 0.35 AT2G43290.1
MSS3
Calcium-binding EF-hand family protein
Chr5_+_20764096 0.35 AT5G51070.1
ERD1
Clp ATPase
Chr3_-_18863397 0.34 AT3G50750.1
BEH1
BES1/BZR1 homolog 1
Chr5_-_21154395 0.34 AT5G52060.1
BAG1
BCL-2-associated athanogene 1
Chr5_+_6826365 0.34 AT5G20230.1
BCB
blue-copper-binding protein
Chr3_+_9892791 0.34 AT3G26840.1
PES2
Esterase/lipase/thioesterase family protein
Chr1_+_7313901 0.33 AT1G20970.1
AT1G20970
calponin-like domain protein
Chr1_+_2238017 0.33 AT1G07280.1
AT1G07280.2
AT1G07280.4
AT1G07280.3
AT1G07280
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_+_13827425 0.33 AT2G32580.1
AT2G32580.2
AT2G32580
transmembrane protein, putative (DUF1068)
Chr5_-_23712558 0.33 AT5G58690.1
AT5G58690.2
PLC5
phosphatidylinositol-speciwc phospholipase C5
Chr5_+_3032375 0.33 AT5G09760.1
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_+_2063414 0.33 AT5G06700.1
AT5G06700
trichome birefringence-like protein (DUF828)
Chr3_-_2931289 0.33 AT3G09540.2
AT3G09540.3
AT3G09540.1
AT3G09540
Pectin lyase-like superfamily protein
Chr1_+_23168767 0.33 AT1G62570.1
FMO GS-OX4
flavin-monooxygenase glucosinolate S-oxygenase 4
Chr1_-_24775944 0.33 AT1G66410.3
AT1G66410.4
AT1G66410.1
AT1G66410.2
CAM4
calmodulin 4
Chr1_-_9724800 0.33 AT1G27910.1
PUB45
plant U-box 45
Chr5_+_3032019 0.33 AT5G09760.2
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr2_-_14477265 0.32 AT2G34300.2
AT2G34300
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_16768935 0.32 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr4_+_18296388 0.32 AT4G39350.1
CESA2
cellulose synthase A2
Chr2_-_1017222 0.31 AT2G03340.1
WRKY3
WRKY DNA-binding protein 3
Chr4_-_9505455 0.31 AT4G16890.3
AT4G16890.5
SNC1
TIR-NBS-LRR class disease resistance protein
Chr4_-_10016039 0.31 AT4G18030.1
AT4G18030
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_7434743 0.31 AT3G21190.1
MSR1
O-fucosyltransferase family protein
Chr1_-_6860376 0.31 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
AT1G19835
filament-like protein (DUF869)
Chr4_-_9505736 0.30 AT4G16890.4
AT4G16890.1
AT4G16890.2
SNC1
TIR-NBS-LRR class disease resistance protein
Chr4_+_11724706 0.30 AT4G22130.2
SRF8
STRUBBELIG-receptor family 8
Chr1_+_3020221 0.30 AT1G09350.2
GolS3
galactinol synthase 3
Chr3_+_20666887 0.30 AT3G55690.1
AT3G55690
hypothetical protein
Chr3_-_9943882 0.30 AT3G26950.1
AT3G26950
transmembrane protein
Chr3_+_354360 0.30 AT3G02060.1
AT3G02060.3
AT3G02060.2
AT3G02060
DEAD/DEAH box helicase
Chr2_+_1676999 0.29 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr2_+_1676717 0.29 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr4_+_5461398 0.29 AT4G08580.1
AT4G08580.2
AT4G08580
microfibrillar-associated protein-like protein
Chr1_-_25678468 0.29 AT1G68470.1
AT1G68470
Exostosin family protein
Chr4_+_7641378 0.29 AT4G13110.1
AT4G13110
BSD domain-containing protein
Chr5_+_20348615 0.28 AT5G50010.1
AT5G50010
transcription factor bHLH145
Chr3_+_16432286 0.28 AT3G44970.1
AT3G44970.2
AT3G44970
Cytochrome P450 superfamily protein
Chr1_-_1108725 0.28 AT1G04190.1
TPR3
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_16484034 0.28 AT4G34480.3
AT4G34480.2
AT4G34480.1
AT4G34480
O-Glycosyl hydrolases family 17 protein
Chr4_-_17267472 0.27 AT4G36610.1
AT4G36610
alpha/beta-Hydrolases superfamily protein
Chr3_-_18038234 0.27 AT3G48690.1
CXE12
alpha/beta-Hydrolases superfamily protein
Chr4_+_11723388 0.27 AT4G22130.1
SRF8
STRUBBELIG-receptor family 8
Chr3_-_2826922 0.27 AT3G09210.1
PTAC13
plastid transcriptionally active 13
Chr2_-_1482089 0.27 AT2G04280.1
AT2G04280
calcium ion-binding protein
Chr4_-_16330212 0.27 AT4G34090.2
AT4G34090.3
AT4G34090.1
AT4G34090
cyclin delta-3
Chr5_-_26845294 0.27 AT5G67280.1
RLK
receptor-like kinase
Chr1_-_25514601 0.27 AT1G68060.1
MAP70-1
microtubule-associated proteins 70-1
Chr1_+_3019639 0.27 AT1G09350.1
GolS3
galactinol synthase 3
Chr2_+_7200423 0.26 AT2G16600.1
ROC3
rotamase CYP 3
Chr4_-_17497276 0.26 AT4G37160.1
sks15
SKU5 similar 15
Chr4_+_10521259 0.26 AT4G19230.1
AT4G19230.2
CYP707A1
cytochrome P450, family 707, subfamily A, polypeptide 1
Chr2_+_7200807 0.26 AT2G16600.2
ROC3
rotamase CYP 3
Chr1_-_6812757 0.25 AT1G19700.3
AT1G19700.1
BEL10
BEL1-like homeodomain 10
Chr5_-_15510713 0.25 AT5G38720.3
AT5G38720.1
AT5G38720
ribosomal RNA-processing 7 protein
Chr3_+_6710349 0.25 AT3G19370.3
AT3G19370.1
AT3G19370
filament-like protein (DUF869)
Chr5_-_834549 0.25 AT5G03380.1
AT5G03380
Heavy metal transport/detoxification superfamily protein
Chr4_-_6751525 0.25 AT4G11050.3
AT4G11050.1
AT4G11050.2
GH9C3
glycosyl hydrolase 9C3
Chr5_-_22055443 0.25 AT5G54300.1
AT5G54300
cotton fiber-like protein (DUF761)
Chr1_-_6811994 0.25 AT1G19700.2
BEL10
BEL1-like homeodomain 10
Chr4_-_17497124 0.25 AT4G37160.2
sks15
SKU5 similar 15
Chr1_-_28915102 0.25 AT1G76952.1
IDL5
inflorescence deficient in abscission (IDA)-like 5
Chr1_-_9956960 0.25 AT1G28370.1
AT1G28370.2
ERF11
ERF domain protein 11
Chr5_-_16810587 0.25 AT5G42020.2
AT5G42020.3
AT5G42020.1
BIP2
Heat shock protein 70 (Hsp 70) family protein
Chr2_+_15501726 0.24 AT2G36910.1
ABCB1
ATP binding cassette subfamily B1
Chr1_-_4530222 0.24 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr5_+_16781858 0.24 AT5G41940.1
AT5G41940
Ypt/Rab-GAP domain of gyp1p superfamily protein
Chr1_-_25480176 0.24 AT1G67950.4
AT1G67950
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_26818949 0.24 AT5G67210.1
IRX15-L
IRREGULAR XYLEM protein (DUF579)
Chr3_-_6855513 0.24 AT3G19720.3
AT3G19720.2
AT3G19720.1
ARC5
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_+_12871984 0.23 AT2G30140.1
AT2G30140.2
UGT87A2
UDP-Glycosyltransferase superfamily protein
Chr1_-_9304133 0.23 AT1G26850.3
AT1G26850.1
AT1G26850.2
AT1G26850
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_17979740 0.23 AT4G38400.1
AT4G38401.1
EXLA2
AT4G38401
expansin-like A2
hypothetical protein
Chr2_+_18262189 0.23 AT2G44160.1
MTHFR2
methylenetetrahydrofolate reductase 2
Chr3_-_21827509 0.23 AT3G59050.1
PAO3
polyamine oxidase 3
Chr1_+_27887383 0.23 AT1G74160.2
AT1G74160.3
TRM4
LONGIFOLIA protein
Chr1_+_11430257 0.23 AT1G31850.4
AT1G31850.3
AT1G31850
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_72292 0.23 AT5G01190.2
AT5G01190.1
LAC10
laccase 10
Chr4_-_7493080 0.23 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr5_-_10295283 0.23 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
Chr1_+_27736546 0.22 AT1G73750.2
AT1G73750.1
AT1G73750
alpha/beta hydrolase family protein
Chr1_+_7680390 0.22 AT1G21880.2
AT1G21880.1
LYM1
lysm domain GPI-anchored protein 1 precursor
Chr3_-_10086652 0.22 AT3G27300.5
AT3G27300.3
AT3G27300.2
AT3G27300.1
AT3G27300.4
G6PD5
glucose-6-phosphate dehydrogenase 5
Chr1_+_28291698 0.22 AT1G75390.1
AT1G75390.2
bZIP44
basic leucine-zipper 44
Chr4_+_10021786 0.22 AT4G18050.2
ABCB9
P-glycoprotein 9
Chr5_+_5141035 0.22 AT5G15750.1
AT5G15750
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
Chr3_+_7644265 0.22 AT3G21700.3
AT3G21700.1
AT3G21700.2
SGP2
Ras-related small GTP-binding family protein
Chr3_+_2534776 0.22 AT3G07960.1
AT3G07960.3
AT3G07960.2
AT3G07960.4
PIP5K6
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr3_-_15225495 0.22 AT3G43270.1
AT3G43270
Plant invertase/pectin methylesterase inhibitor superfamily
Chr2_-_11777529 0.22 AT2G27580.2
AT2G27580.1
AT2G27580
A20/AN1-like zinc finger family protein
Chr3_+_17311672 0.21 AT3G46990.1
AT3G46990
DUF740 family protein, putative (DUF740)
Chr1_-_2282828 0.21 AT1G07430.1
HAI2
highly ABA-induced PP2C protein 2
Chr5_+_16468327 0.21 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr2_-_9266393 0.21 AT2G21660.2
GRP7
cold, circadian rhythm, and rna binding 2
Chr4_-_13854191 0.21 AT4G27800.2
AT4G27800.3
AT4G27800.1
TAP38
thylakoid-associated phosphatase 38
Chr4_-_13532696 0.21 AT4G26940.2
AT4G26940.1
AT4G26940
Galactosyltransferase family protein
Chr5_+_23476731 0.21 AT5G58000.2
AT5G58000
Reticulon family protein
Chr2_-_10737800 0.21 AT2G25200.1
AT2G25200
hypothetical protein (DUF868)
Chr1_-_25738134 0.21 AT1G68560.1
XYL1
alpha-xylosidase 1
Chr5_-_541316 0.21 AT5G02460.1
AT5G02460
Dof-type zinc finger DNA-binding family protein
Chr2_-_10487749 0.21 AT2G24650.1
AT2G24650.7
AT2G24650.2
AT2G24650.5
AT2G24650.4
AT2G24650.3
AT2G24650
B3 domain-containing protein REM13
Chr5_+_8735944 0.21 AT5G25220.1
AT5G25220.2
KNAT3
homeobox protein knotted-1-like 3

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G31220

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.1 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.2 0.9 GO:0005980 glycogen catabolic process(GO:0005980)
0.2 0.8 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.1 0.4 GO:0055089 fatty acid homeostasis(GO:0055089)
0.1 0.5 GO:0048838 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.1 0.4 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.1 0.8 GO:2000068 regulation of defense response to insect(GO:2000068)
0.1 0.3 GO:0033306 phytol metabolic process(GO:0033306)
0.1 0.2 GO:0046203 spermidine catabolic process(GO:0046203)
0.1 0.6 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.1 1.4 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.1 0.2 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 0.1 GO:0046208 spermine catabolic process(GO:0046208)
0.1 0.4 GO:0097502 mannosylation(GO:0097502)
0.1 1.1 GO:0006949 syncytium formation(GO:0006949)
0.1 1.0 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.1 0.2 GO:0080005 photosystem stoichiometry adjustment(GO:0080005)
0.1 0.2 GO:0035606 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
0.1 0.7 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.0 0.1 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.0 0.2 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.0 0.2 GO:0043478 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.0 0.4 GO:0016554 cytidine to uridine editing(GO:0016554)
0.0 0.4 GO:0043462 regulation of ATPase activity(GO:0043462)
0.0 0.1 GO:0010028 xanthophyll cycle(GO:0010028)
0.0 0.4 GO:0070370 cellular heat acclimation(GO:0070370)
0.0 0.3 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.0 0.1 GO:2000058 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.0 0.2 GO:0009726 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.4 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.3 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.0 0.6 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862)
0.0 0.3 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.0 0.6 GO:0009269 response to desiccation(GO:0009269)
0.0 0.4 GO:0032544 plastid translation(GO:0032544)
0.0 0.5 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.0 0.1 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.6 GO:0005983 starch catabolic process(GO:0005983)
0.0 0.3 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.0 0.3 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.0 2.0 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.1 GO:1902969 mitotic DNA replication(GO:1902969)
0.0 0.9 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 0.1 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.2 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.2 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.6 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.1 GO:0006624 vacuolar protein processing(GO:0006624)
0.0 1.1 GO:0009631 cold acclimation(GO:0009631)
0.0 0.1 GO:0043446 cellular alkane metabolic process(GO:0043446)
0.0 0.5 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.0 0.3 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.2 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.3 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 0.2 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.0 0.2 GO:1990937 xylan acetylation(GO:1990937)
0.0 0.3 GO:0033559 unsaturated fatty acid biosynthetic process(GO:0006636) unsaturated fatty acid metabolic process(GO:0033559) very long-chain fatty acid biosynthetic process(GO:0042761)
0.0 0.2 GO:0070828 heterochromatin organization(GO:0070828)
0.0 0.1 GO:0050792 regulation of viral process(GO:0050792)
0.0 0.4 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.4 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.5 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 0.1 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.0 0.4 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.2 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.1 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.0 0.5 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.4 GO:0045010 positive regulation of actin filament polymerization(GO:0030838) actin nucleation(GO:0045010)
0.0 0.1 GO:0060261 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.0 0.1 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.0 0.1 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.1 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.0 0.2 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.2 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 1.1 GO:0010150 leaf senescence(GO:0010150)
0.0 0.2 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.0 0.3 GO:0010268 brassinosteroid homeostasis(GO:0010268)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0034457 Mpp10 complex(GO:0034457)
0.1 3.5 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 0.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.4 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0 0.7 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 1.5 GO:0010319 stromule(GO:0010319)
0.0 0.1 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0 0.3 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.0 0.1 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 2.8 GO:0099503 secretory vesicle(GO:0099503)
0.0 0.2 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.1 GO:0042555 MCM complex(GO:0042555)
0.0 0.3 GO:0005871 kinesin complex(GO:0005871)
0.0 0.1 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.0 0.3 GO:0009508 plastid chromosome(GO:0009508)
0.0 1.5 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.7 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.1 GO:0005828 condensed nuclear chromosome kinetochore(GO:0000778) kinetochore microtubule(GO:0005828)
0.0 0.2 GO:0090404 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 0.2 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.2 GO:0000792 heterochromatin(GO:0000792)
0.0 0.1 GO:0043230 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.3 1.4 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.2 0.9 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.2 0.8 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.2 0.8 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.1 0.6 GO:0004556 alpha-amylase activity(GO:0004556)
0.1 0.6 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 0.4 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.1 0.6 GO:0010313 phytochrome binding(GO:0010313)
0.1 1.0 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.1 0.5 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.1 1.8 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.1 0.3 GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103)
0.1 0.6 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.1 0.4 GO:0004623 phospholipase A2 activity(GO:0004623)
0.1 0.2 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
0.1 0.3 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.1 0.4 GO:0080025 phosphatidylinositol-3,5-bisphosphate binding(GO:0080025)
0.0 0.1 GO:0043140 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.0 0.1 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.0 1.1 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.3 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 0.5 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.5 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.0 0.3 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.1 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.0 0.2 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.0 0.5 GO:0016018 cyclosporin A binding(GO:0016018)
0.0 0.2 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.0 0.2 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.0 0.8 GO:0008810 cellulase activity(GO:0008810)
0.0 0.4 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.3 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.1 GO:0010331 gibberellin binding(GO:0010331)
0.0 0.1 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.0 2.1 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.1 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.0 0.4 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.2 GO:1902936 phosphatidylinositol bisphosphate binding(GO:1902936)
0.0 0.3 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.4 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 0.1 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.2 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.7 GO:0031072 heat shock protein binding(GO:0031072)
0.0 0.6 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.2 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.2 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.2 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.4 GO:0051087 chaperone binding(GO:0051087)
0.0 1.8 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.3 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 1.5 GO:0008047 enzyme activator activity(GO:0008047)
0.0 0.4 GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives(GO:0016857)
0.0 0.1 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 0.4 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.5 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.2 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.2 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.2 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.0 0.1 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA