Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT2G31220
Z-value: 1.11
Transcription factors associated with AT2G31220
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G31220
|
AT2G31220 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G31220 | arTal_v1_Chr2_+_13303073_13303073 | -0.16 | 5.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.15 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr4_-_14002069_14002124 Show fit | 1.08 |
AT4G28250.2
AT4G28250.3 AT4G28250.4 AT4G28250.1 |
expansin B3 |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 0.97 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_7086873_7086873 Show fit | 0.97 |
AT1G20440.1
|
cold-regulated 47 |
|
| arTal_v1_Chr2_+_14003128_14003128 Show fit | 0.91 |
AT2G32990.1
|
glycosyl hydrolase 9B8 |
|
| arTal_v1_Chr3_+_11252807_11252807 Show fit | 0.90 |
AT3G29320.1
|
Glycosyl transferase, family 35 |
|
| arTal_v1_Chr1_-_7089606_7089606 Show fit | 0.85 |
AT1G20450.1
AT1G20450.2 |
Dehydrin family protein |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 0.84 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_8501542_8501542 Show fit | 0.81 |
AT1G24020.1
|
MLP-like protein 423 |
|
| arTal_v1_Chr2_+_9592956_9592956 Show fit | 0.80 |
AT2G22590.1
|
UDP-Glycosyltransferase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G31220
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.4 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.3 | 1.1 | GO:0033353 | S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498) |
| 0.1 | 1.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 1.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 1.1 | GO:0010150 | leaf senescence(GO:0010150) |
| 0.1 | 1.0 | GO:0048015 | phosphatidylinositol-mediated signaling(GO:0048015) |
| 0.2 | 0.9 | GO:0005980 | glycogen catabolic process(GO:0005980) |
| 0.0 | 0.9 | GO:0051084 | 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085) |
| 0.2 | 0.8 | GO:0006556 | S-adenosylmethionine biosynthetic process(GO:0006556) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.5 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 2.8 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 1.5 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 1.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 0.7 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 0.7 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 0.4 | GO:0005851 | eukaryotic translation initiation factor 2B complex(GO:0005851) |
| 0.0 | 0.3 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
| 0.0 | 0.3 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.0 | 0.3 | GO:0009508 | plastid chromosome(GO:0009508) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.1 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 1.8 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.0 | 1.8 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 1.5 | GO:0008047 | enzyme activator activity(GO:0008047) |
| 0.3 | 1.4 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.4 | 1.1 | GO:0004013 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
| 0.0 | 1.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 1.0 | GO:0004435 | phosphatidylinositol phospholipase C activity(GO:0004435) |
| 0.2 | 0.9 | GO:0008703 | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703) |
| 0.2 | 0.8 | GO:0004737 | pyruvate decarboxylase activity(GO:0004737) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |