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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G30250
Z-value: 1.73
Transcription factors associated with AT2G30250
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G30250
|
AT2G30250 | WRKY DNA-binding protein 25 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY25 | arTal_v1_Chr2_-_12905338_12905338 | 0.07 | 8.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 3.93 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 3.50 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 3.45 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 3.29 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 3.27 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 3.24 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 3.16 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 3.14 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 2.79 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 2.68 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G30250
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 31.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 27.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.6 | 12.4 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.1 | 6.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 5.3 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.1 | 4.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 4.4 | GO:0008037 | cell recognition(GO:0008037) recognition of pollen(GO:0048544) |
| 0.3 | 4.3 | GO:0015865 | purine nucleotide transport(GO:0015865) |
| 0.1 | 4.0 | GO:0010927 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.8 | 3.8 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 72.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 12.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 10.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.9 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 2.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 2.2 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 2.2 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 2.2 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.0 | 2.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.4 | 1.3 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.4 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 7.1 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.2 | 7.0 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 6.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 5.9 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.5 | 5.2 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
| 0.0 | 4.9 | GO:0030246 | carbohydrate binding(GO:0030246) |
| 0.2 | 4.2 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 4.1 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.6 | 3.9 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 1.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.4 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | PID ATR PATHWAY | ATR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.8 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 1.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.6 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.6 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.1 | 0.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.4 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.2 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |