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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G26960
Z-value: 0.97
Transcription factors associated with AT2G26960
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G26960
|
AT2G26960 | myb domain protein 81 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB81 | arTal_v1_Chr2_-_11507426_11507426 | -0.21 | 4.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 1.54 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 1.42 |
AT1G04560.1
|
AWPM-19-like family protein |
|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 1.26 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 1.23 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.20 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr3_-_12451556_12451556 Show fit | 1.18 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
| arTal_v1_Chr1_-_20458631_20458631 Show fit | 1.16 |
AT1G54860.1
|
Glycoprotein membrane precursor GPI-anchored |
|
| arTal_v1_Chr4_-_16168711_16168711 Show fit | 1.13 |
AT4G33660.1
|
cysteine-rich TM module stress tolerance protein |
|
| arTal_v1_Chr3_-_790693_790693 Show fit | 1.08 |
AT3G03341.1
|
cold-regulated protein |
|
| arTal_v1_Chr2_+_17854557_17854557 Show fit | 1.05 |
AT2G42900.1
|
Plant basic secretory protein (BSP) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G26960
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.0 | 3.3 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 2.7 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 2.2 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.1 | 1.9 | GO:2000032 | regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032) |
| 0.1 | 1.7 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
| 0.1 | 1.6 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.1 | 1.5 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.1 | 1.4 | GO:0071712 | ER-associated misfolded protein catabolic process(GO:0071712) |
| 0.3 | 1.3 | GO:0019310 | inositol catabolic process(GO:0019310) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 0.9 | GO:0005811 | lipid particle(GO:0005811) |
| 0.3 | 0.8 | GO:0043667 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.1 | 0.8 | GO:0071818 | BAT3 complex(GO:0071818) |
| 0.0 | 0.8 | GO:0090406 | pollen tube(GO:0090406) |
| 0.2 | 0.7 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
| 0.1 | 0.7 | GO:0005850 | eukaryotic translation initiation factor 2 complex(GO:0005850) |
| 0.0 | 0.6 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 0.5 | GO:0031306 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.0 | 0.5 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.7 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 1.8 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.0 | 1.7 | GO:0044390 | ubiquitin-like protein conjugating enzyme binding(GO:0044390) |
| 0.3 | 1.6 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.1 | 1.4 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
| 0.3 | 1.3 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.0 | 1.3 | GO:0071949 | FAD binding(GO:0071949) |
| 0.1 | 1.2 | GO:0052736 | beta-glucanase activity(GO:0052736) |
| 0.1 | 1.2 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 1.1 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.2 | 0.5 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.2 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.1 | 0.2 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.0 | 0.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.1 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.1 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |