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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G24430
Z-value: 0.54
Transcription factors associated with AT2G24430
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G24430
|
AT2G24430 | NAC domain containing protein 38 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC038 | arTal_v1_Chr2_-_10386480_10386625 | 0.22 | 4.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 1.45 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 0.81 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_7919345_7919345 Show fit | 0.73 |
AT2G18193.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr2_-_15412064_15412064 Show fit | 0.66 |
AT2G36750.1
|
UDP-glucosyl transferase 73C1 |
|
| arTal_v1_Chr3_+_7906521_7906521 Show fit | 0.61 |
AT3G22370.1
|
alternative oxidase 1A |
|
| arTal_v1_Chr1_-_1704838_1704838 Show fit | 0.58 |
AT1G05680.1
|
Uridine diphosphate glycosyltransferase 74E2 |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 0.57 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_-_15425129_15425129 Show fit | 0.56 |
AT2G36800.1
|
don-glucosyltransferase 1 |
|
| arTal_v1_Chr5_-_8181107_8181107 Show fit | 0.54 |
AT5G24155.2
AT5G24155.3 AT5G24155.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr2_+_12588191_12588197 Show fit | 0.54 |
AT2G29300.2
AT2G29300.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G24430
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.6 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.1 | 1.5 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.0 | 1.3 | GO:0008037 | cell recognition(GO:0008037) recognition of pollen(GO:0048544) |
| 0.0 | 1.2 | GO:0010224 | response to UV-B(GO:0010224) |
| 0.0 | 1.1 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.0 | 1.1 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 1.0 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.1 | 1.0 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) |
| 0.0 | 1.0 | GO:0009817 | defense response to fungus, incompatible interaction(GO:0009817) |
| 0.2 | 0.9 | GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 0.9 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.1 | 0.8 | GO:0000786 | nucleosome(GO:0000786) |
| 0.0 | 0.7 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 0.7 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 0.6 | GO:0098573 | intrinsic component of mitochondrial membrane(GO:0098573) |
| 0.1 | 0.5 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.1 | 0.5 | GO:0016593 | Cdc73/Paf1 complex(GO:0016593) |
| 0.0 | 0.5 | GO:0009521 | photosystem(GO:0009521) |
| 0.0 | 0.5 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.4 | 1.2 | GO:0050403 | trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502) |
| 0.2 | 1.1 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.1 | 1.1 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.0 | 1.1 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.0 | 0.9 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.0 | 0.9 | GO:0042393 | histone binding(GO:0042393) |
| 0.2 | 0.8 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
| 0.2 | 0.7 | GO:0050736 | O-malonyltransferase activity(GO:0050736) |
| 0.1 | 0.6 | GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)(GO:0016703) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.2 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.2 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
| 0.0 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.0 | SIG CHEMOTAXIS | Genes related to chemotaxis |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.3 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.2 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 0.1 | 0.2 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.2 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.2 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.0 | 0.1 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |