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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G24430

Z-value: 0.54

Transcription factors associated with AT2G24430

Gene Symbol Gene ID Gene Info
AT2G24430
AT2G24430 NAC domain containing protein 38

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NAC038arTal_v1_Chr2_-_10386480_103866250.224.4e-01Click!

Activity profile of AT2G24430 motif

Sorted Z-values of AT2G24430 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_9829261 1.45 AT1G28135.1
AT1G28135
hypothetical protein
Chr2_+_7845923 0.81 AT2G18050.2
AT2G18050.1
HIS1-3
histone H1-3
Chr2_-_7919345 0.73 AT2G18193.1
AT2G18193
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_-_15412064 0.66 AT2G36750.1
UGT73C1
UDP-glucosyl transferase 73C1
Chr3_+_7906521 0.61 AT3G22370.1
AOX1A
alternative oxidase 1A
Chr1_-_1704838 0.58 AT1G05680.1
UGT74E2
Uridine diphosphate glycosyltransferase 74E2
Chr4_+_11150049 0.57 AT4G20820.1
AT4G20820
FAD-binding Berberine family protein
Chr2_-_15425129 0.56 AT2G36800.1
DOGT1
don-glucosyltransferase 1
Chr5_-_8181107 0.54 AT5G24155.2
AT5G24155.3
AT5G24155.1
AT5G24155
FAD/NAD(P)-binding oxidoreductase family protein
Chr2_+_12588191 0.54 AT2G29300.2
AT2G29300.1
AT2G29300
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_15976805 0.53 AT1G42550.1
PMI1
plastid movement impaired1
Chr2_+_9254378 0.51 AT2G21640.1
AT2G21640
marker for oxidative stress response protein
Chr1_+_24472873 0.51 AT1G65800.1
AT1G65800.2
RK2
receptor kinase 2
Chr4_-_8854706 0.49 AT4G15490.1
UGT84A3
UDP-Glycosyltransferase superfamily protein
Chr1_+_3066674 0.48 AT1G09500.1
AT1G09500.2
AT1G09500.3
AT1G09500
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_2699257 0.47 AT3G08860.2
PYD4
PYRIMIDINE 4
Chr1_+_26705420 0.47 AT1G70820.1
AT1G70820.2
AT1G70820
phosphoglucomutase, putative / glucose phosphomutase
Chr1_+_20525654 0.46 AT1G55020.1
LOX1
lipoxygenase 1
Chr3_+_10538005 0.46 AT3G28270.2
AT3G28270.1
AT3G28270
transmembrane protein, putative (DUF677)
Chr3_+_17051520 0.46 AT3G46370.1
AT3G46370.2
AT3G46370
Leucine-rich repeat protein kinase family protein
Chr3_-_2699420 0.46 AT3G08860.1
PYD4
PYRIMIDINE 4
Chr4_+_8010967 0.45 AT4G13830.2
AT4G13830.3
J20
DNAJ-like 20
Chr3_+_9827682 0.45 AT3G26740.1
CCL
CCR-like protein
Chr1_-_9140439 0.45 AT1G26410.1
AT1G26410
FAD-binding Berberine family protein
Chr4_-_8007578 0.44 AT4G13810.3
AT4G13810.1
AT4G13810.2
RLP47
receptor like protein 47
Chr4_+_8011183 0.43 AT4G13830.1
J20
DNAJ-like 20
Chr4_+_14307195 0.42 AT4G29030.1
AT4G29030
Putative membrane lipoprotein
Chr1_-_9128568 0.42 AT1G26380.1
AT1G26380
FAD-binding Berberine family protein
Chr1_+_28107822 0.41 AT1G74810.2
AT1G74810.5
AT1G74810.3
AT1G74810.4
AT1G74810.6
AT1G74810.7
AT1G74810.1
BOR5
HCO3- transporter family
Chr2_-_14322082 0.41 AT2G33850.1
AT2G33850
E6-like protein
Chr5_+_5995479 0.41 AT5G18130.2
AT5G18130
transmembrane protein
Chr3_-_9634470 0.40 AT3G26290.1
CYP71B26
cytochrome P450, family 71, subfamily B, polypeptide 26
Chr4_+_16502532 0.40 AT4G34550.1
AT4G34550
F-box protein
Chr5_+_5995323 0.40 AT5G18130.1
AT5G18130
transmembrane protein
Chr3_+_1549446 0.40 AT3G05400.1
AT3G05400
Major facilitator superfamily protein
Chr3_-_8890927 0.40 AT3G24460.1
AT3G24460
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr3_+_1549667 0.40 AT3G05400.2
AT3G05400
Major facilitator superfamily protein
Chr3_+_1172687 0.40 AT3G04420.2
AT3G04420.1
NAC048
NAC domain containing protein 48
Chr5_+_25679425 0.40 AT5G64190.2
AT5G64190.1
AT5G64190
neuronal PAS domain protein
Chr3_-_17133462 0.39 AT3G46530.1
RPP13
NB-ARC domain-containing disease resistance protein
Chr5_+_5497524 0.39 AT5G16730.1
AT5G16730
weak chloroplast movement under blue light protein (DUF827)
Chr3_-_9634822 0.39 AT3G26290.2
CYP71B26
cytochrome P450, family 71, subfamily B, polypeptide 26
Chr1_+_19980299 0.39 AT1G53540.1
AT1G53540
HSP20-like chaperones superfamily protein
Chr3_-_22915393 0.39 AT3G61890.1
HB-12
homeobox 12
Chr5_-_17166032 0.39 AT5G42800.1
DFR
dihydroflavonol 4-reductase
Chr3_+_16525245 0.38 AT3G45140.1
AT3G45140.2
LOX2
lipoxygenase 2
Chr1_+_3999157 0.38 AT1G11850.2
AT1G11850.4
AT1G11850.3
AT1G11850.1
AT1G11850
transmembrane protein
Chr1_-_26770175 0.38 AT1G71000.1
AT1G71000.2
AT1G71000
Chaperone DnaJ-domain superfamily protein
Chr5_-_8747290 0.38 AT5G25240.1
AT5G25240
stress induced protein
Chr4_+_9171280 0.37 AT4G16190.1
AT4G16190
Papain family cysteine protease
Chr2_-_16950705 0.36 AT2G40610.1
EXPA8
expansin A8
Chr4_+_9705845 0.36 AT4G17370.1
AT4G17370.2
AT4G17370
Oxidoreductase family protein
Chr3_-_9684657 0.36 AT3G26460.1
AT3G26460
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr5_+_6833564 0.36 AT5G20250.2
AT5G20250.1
AT5G20250.4
AT5G20250.3
DIN10
Raffinose synthase family protein
Chr1_-_12003005 0.36 AT1G33102.1
AT1G33102
hypothetical protein
Chr4_+_16502747 0.36 AT4G34550.2
AT4G34550
F-box protein
Chr4_+_15202288 0.36 AT4G31330.1
AT4G31330
transmembrane protein, putative (Protein of unknown function, DUF599)
Chr1_+_1164910 0.35 AT1G04350.1
AT1G04350
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_17285749 0.35 AT1G47128.1
RD21A
Granulin repeat cysteine protease family protein
Chr5_+_8515200 0.35 AT5G24800.1
BZIP9
basic leucine zipper 9
Chr5_+_21352557 0.35 AT5G52640.1
HSP90.1
heat shock-like protein
Chr1_-_9864779 0.35 AT1G28230.1
PUP1
purine permease 1
Chr1_-_3590928 0.35 AT1G10760.1
AT1G10760.3
SEX1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr3_+_4729399 0.35 AT3G14210.1
AT3G14210.2
ESM1
GDSL-like lipase/acylhydrolase superfamily protein
Chr3_+_17879542 0.35 AT3G48280.1
CYP71A25
cytochrome P450, family 71, subfamily A, polypeptide 25
Chr2_+_3618058 0.35 AT2G08986.1
AT2G08986
hypothetical protein
Chr5_-_21938396 0.35 AT5G54060.1
UF3GT
UDP-glucose:flavonoid 3-o-glucosyltransferase
Chr4_-_7026224 0.35 AT4G11650.1
OSM34
osmotin 34
Chr3_+_16789780 0.34 AT3G45730.1
AT3G45730
hypothetical protein
Chr1_+_7823066 0.34 AT1G22160.1
AT1G22160
senescence-associated family protein (DUF581)
Chr3_+_5081780 0.34 AT3G15095.2
AT3G15095.1
AT3G15095.3
HCF243
Serine/Threonine-kinase pakA-like protein
Chr5_-_6993948 0.34 AT5G20670.1
AT5G20670
DUF1677 family protein (DUF1677)
Chr2_-_8913747 0.34 AT2G20670.1
AT2G20670
sugar phosphate exchanger, putative (DUF506)
Chr4_+_334573 0.33 AT4G00780.1
AT4G00780
TRAF-like family protein
Chr2_+_16630411 0.33 AT2G39850.1
AT2G39850
Subtilisin-like serine endopeptidase family protein
Chr1_+_23333619 0.33 AT1G62981.1
AT1G62981.2
AT1G62981.3
AT1G62981
transmembrane protein, putative (DUF1191)
Chr4_+_15676240 0.33 AT4G32480.1
AT4G32480
sugar phosphate exchanger, putative (DUF506)
Chr4_-_6632641 0.33 AT4G10770.2
AT4G10770.1
OPT7
oligopeptide transporter 7
Chr1_-_3590701 0.33 AT1G10760.2
SEX1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr2_-_12334788 0.33 AT2G28755.2
AT2G28755.1
AT2G28755
UDP-D-glucuronate carboxy-lyase-like protein
Chr1_-_27456949 0.33 AT1G72980.1
LBD7
LOB domain-containing protein 7
Chr2_-_10737800 0.33 AT2G25200.1
AT2G25200
hypothetical protein (DUF868)
Chr5_+_15843881 0.33 AT5G39570.1
AT5G39570.2
AT5G39570
transmembrane protein
Chr4_-_16703486 0.32 AT4G35090.3
AT4G35090.1
CAT2
catalase 2
Chr4_-_16703286 0.32 AT4G35090.2
CAT2
catalase 2
Chr5_-_7373259 0.32 AT5G22270.1
AT5G22270
hypothetical protein
Chr1_+_2034156 0.32 AT1G06645.1
AT1G06645
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_-_17494279 0.32 AT4G37150.1
MES9
methyl esterase 9
Chr3_+_7812861 0.32 AT3G22150.2
AT3G22150.1
AT3G22150
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_2234689 0.32 AT4G04490.1
CRK36
cysteine-rich RLK (RECEPTOR-like protein kinase) 36
Chr3_+_6876043 0.31 AT3G19800.1
AT3G19800.2
AT3G19800
E3 ubiquitin-protein ligase, putative (DUF177)
Chr2_-_15585186 0.31 AT2G37080.3
AT2G37080.2
AT2G37080.1
RIP2
ROP interactive partner 3
Chr5_-_315405 0.31 AT5G01820.1
SR1
serine/threonine protein kinase 1
Chr4_-_12170055 0.31 AT4G23260.1
AT4G23260.2
CRK18
cysteine-rich RLK (RECEPTOR-like protein kinase) 18
Chr5_-_6838011 0.31 AT5G20260.3
AT5G20260
Exostosin family protein
Chr2_-_13717002 0.31 AT2G32290.1
BAM6
beta-amylase 6
Chr5_+_1389979 0.31 AT5G04810.1
AT5G04810.2
AT5G04810
pentatricopeptide (PPR) repeat-containing protein
Chr3_-_9712826 0.31 AT3G26510.5
AT3G26510.4
AT3G26510.1
AT3G26510.6
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_15092353 0.31 AT2G35940.3
AT2G35940.1
BLH1
BEL1-like homeodomain 1
Chr1_-_9143336 0.30 AT1G26420.1
AT1G26420
FAD-binding Berberine family protein
Chr5_-_3278461 0.30 AT5G10430.1
AGP4
arabinogalactan protein 4
Chr1_-_26723978 0.30 AT1G70880.1
AT1G70880
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr5_-_17888530 0.30 AT5G44400.1
AT5G44400
FAD-binding Berberine family protein
Chr3_+_11527756 0.30 AT3G29670.1
PMAT2
HXXXD-type acyl-transferase family protein
Chr3_-_3971921 0.30 AT3G12520.2
AT3G12520.3
AT3G12520.1
SULTR4%3B2
sulfate transporter 4;2
Chr3_-_9712659 0.30 AT3G26510.3
AT3G26510.7
AT3G26510.2
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr3_-_21869036 0.29 AT3G59140.1
ABCC10
multidrug resistance-associated protein 14
Chr5_+_16579936 0.29 AT5G41410.1
BEL1
POX (plant homeobox) family protein
Chr4_+_9965742 0.29 AT4G17940.1
AT4G17940
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_20764096 0.29 AT5G51070.1
ERD1
Clp ATPase
Chr4_-_14820595 0.29 AT4G30270.1
XTH24
xyloglucan endotransglucosylase/hydrolase 24
Chr2_-_15294857 0.29 AT2G36450.1
HRD
Integrase-type DNA-binding superfamily protein
Chr1_+_28032562 0.29 AT1G74640.1
AT1G74640
alpha/beta-Hydrolases superfamily protein
Chr1_+_27148261 0.29 AT1G72150.1
PATL1
PATELLIN 1
Chr1_+_24677121 0.29 AT1G66230.1
MYB20
myb domain protein 20
Chr5_+_21595990 0.29 AT5G53220.2
AT5G53220.7
AT5G53220.1
AT5G53220.5
AT5G53220.6
AT5G53220.4
AT5G53220.3
AT5G53220
hypothetical protein
Chr5_-_6839587 0.28 AT5G20260.2
AT5G20260.1
AT5G20260
Exostosin family protein
Chr1_+_4688018 0.28 AT1G13670.1
AT1G13670
hypothetical protein
Chr3_-_9646093 0.28 AT3G26320.1
CYP71B36
cytochrome P450, family 71, subfamily B, polypeptide 36
Chr2_-_8850111 0.28 AT2G20560.1
AT2G20560
DNAJ heat shock family protein
Chr1_+_5885007 0.28 AT1G17220.1
FUG1
Translation initiation factor 2, small GTP-binding protein
Chr4_-_9920511 0.28 AT4G17840.1
AT4G17840
CAAX protease self-immunity protein
Chr2_-_15092178 0.28 AT2G35940.2
BLH1
BEL1-like homeodomain 1
Chr1_-_9406369 0.28 AT1G27090.1
AT1G27090
glycine-rich protein
Chr1_-_24595544 0.28 AT1G66060.1
AT1G66060
hypothetical protein (DUF577)
Chr1_-_4835089 0.28 AT1G14120.2
AT1G14120.1
AT1G14120.3
AT1G14120
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_6945695 0.28 AT1G20030.1
AT1G20030
Pathogenesis-related thaumatin superfamily protein
Chr3_+_4187371 0.28 AT3G13065.1
SRF4
STRUBBELIG-receptor family 4
Chr3_+_16818347 0.28 AT3G45780.2
PHOT1
phototropin 1
Chr3_-_21008064 0.27 AT3G56710.1
AT3G56710.2
SIB1
sigma factor binding protein 1
Chr1_-_25875662 0.27 AT1G68830.1
STN7
Serine/Threonine kinase domain protein
Chr1_+_8139114 0.27 AT1G22990.1
AT1G22990.2
HIPP22
Heavy metal transport/detoxification superfamily protein
Chr1_+_3951553 0.27 AT1G11720.1
SS3
starch synthase 3
Chr5_-_18597823 0.27 AT5G45840.1
AT5G45840.2
AT5G45840
Leucine-rich repeat protein kinase family protein
Chr5_+_17968092 0.27 AT5G44572.1
AT5G44572
transmembrane protein
Chr3_+_16816721 0.27 AT3G45780.1
PHOT1
phototropin 1
Chr1_+_25765718 0.27 AT1G68620.1
AT1G68620
alpha/beta-Hydrolases superfamily protein
Chr1_+_3841253 0.27 AT1G11410.4
AT1G11410.1
AT1G11410
S-locus lectin protein kinase family protein
Chr1_+_27736546 0.27 AT1G73750.2
AT1G73750.1
AT1G73750
alpha/beta hydrolase family protein
Chr1_+_27429916 0.27 AT1G72890.2
AT1G72890.1
AT1G72890
Disease resistance protein (TIR-NBS class)
Chr5_+_18974022 0.27 AT5G46760.1
MYC3
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr2_-_15870071 0.27 AT2G37920.1
emb1513
copper ion transmembrane transporter
Chr5_-_19172956 0.27 AT5G47220.1
ERF2
ethylene responsive element binding factor 2
Chr4_-_11170071 0.27 AT4G20850.1
TPP2
tripeptidyl peptidase ii
Chr2_-_9978090 0.27 AT2G23430.1
ICK1
Cyclin-dependent kinase inhibitor family protein
Chr1_-_27994178 0.26 AT1G74480.1
RKD2
RWP-RK domain-containing protein
Chr1_-_28284036 0.26 AT1G75380.3
AT1G75380.1
AT1G75380.2
AT1G75380.4
BBD1
bifunctional nuclease in basal defense response 1
Chr5_+_22175461 0.26 AT5G54585.1
AT5G54585
hypothetical protein
Chr5_+_26952341 0.26 AT5G67570.1
DG1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_14541617 0.26 AT2G34500.1
CYP710A1
cytochrome P450, family 710, subfamily A, polypeptide 1
Chr3_-_7709933 0.26 AT3G21890.1
BBX31
B-box type zinc finger family protein
Chr3_+_8918679 0.26 AT3G24500.2
MBF1C
multiprotein bridging factor 1C
Chr1_+_6945425 0.26 AT1G20030.2
AT1G20030
Pathogenesis-related thaumatin superfamily protein
Chr5_+_21853348 0.26 AT5G53820.1
AT5G53820
Late embryogenesis abundant protein (LEA) family protein
Chr1_+_3951366 0.26 AT1G11720.2
SS3
starch synthase 3
Chr2_+_9792166 0.26 AT2G23000.2
AT2G23000.1
scpl10
serine carboxypeptidase-like 10
Chr1_-_130570 0.26 AT1G01320.1
AT1G01320.3
AT1G01320.2
AT1G01320
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_29715017 0.26 AT1G78990.1
AT1G78990
HXXXD-type acyl-transferase family protein
Chr1_-_4633299 0.26 AT1G13520.1
AT1G13520
hypothetical protein (DUF1262)
Chr1_+_2001382 0.26 AT1G06530.1
PMD2
Tropomyosin-like protein
Chr2_-_10113005 0.26 AT2G23760.3
AT2G23760.4
AT2G23760.1
BLH4
BEL1-like homeodomain 4
Chr4_+_8107254 0.26 AT4G14060.1
AT4G14060
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr4_-_9505455 0.26 AT4G16890.3
AT4G16890.5
SNC1
TIR-NBS-LRR class disease resistance protein
Chr5_+_3193017 0.26 AT5G10180.1
SULTR2%3B1
slufate transporter 2;1
Chr2_+_13809019 0.25 AT2G32530.1
CSLB03
cellulose synthase-like B3
Chr1_-_28302728 0.25 AT1G75410.3
AT1G75410.1
BLH3
BEL1-like homeodomain 3
Chr1_+_17847042 0.25 AT1G48300.1
DGAT3
diacylglycerol acyltransferase
Chr1_+_2723677 0.25 AT1G08600.3
AT1G08600.2
AT1G08600.4
AT1G08600.1
ATRX
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_6508797 0.25 AT1G18860.1
WRKY61
WRKY DNA-binding protein 61
Chr4_-_8870801 0.25 AT4G15530.7
AT4G15530.6
AT4G15530.5
AT4G15530.3
AT4G15530.4
AT4G15530.1
PPDK
pyruvate orthophosphate dikinase
Chr4_-_17875201 0.25 AT4G38060.1
AT4G38060.3
AT4G38060.4
AT4G38060
hypothetical protein
Chr4_-_9697578 0.25 AT4G17330.3
AT4G17330.1
AT4G17330.2
G2484-1
G2484-1 protein
Chr4_+_16186791 0.25 AT4G33740.1
AT4G33740.4
AT4G33740.2
AT4G33740.3
AT4G33740.5
AT4G33740
myb-like protein X
Chr1_-_4358894 0.25 AT1G12780.1
UGE1
UDP-D-glucose/UDP-D-galactose 4-epimerase 1
Chr4_-_5932475 0.25 AT4G09350.1
NdhT
Chaperone DnaJ-domain superfamily protein
Chr2_-_7145345 0.25 AT2G16485.1
AT2G16485.2
NERD
GW repeat- and PHD finger-containing protein NERD
Chr3_+_8918267 0.25 AT3G24500.1
MBF1C
multiprotein bridging factor 1C
Chr1_+_30014233 0.25 AT1G79770.1
AT1G79770
CASP-like protein (DUF1677)
Chr3_-_1832190 0.25 AT3G06070.1
AT3G06070
hypothetical protein
Chr1_+_25041833 0.25 AT1G67070.1
AT1G67070.2
DIN9
Mannose-6-phosphate isomerase, type I
Chr1_+_16133286 0.25 AT1G42980.1
AT1G42980
Actin-binding FH2 (formin homology 2) family protein
Chr2_+_18894030 0.25 AT2G45910.2
AT2G45910.1
AT2G45910
U-box domain-containing protein kinase family protein
Chr3_+_20896332 0.25 AT3G56360.1
AT3G56360
hypothetical protein
Chr1_-_18812050 0.25 AT1G50750.1
AT1G50750
aminotransferase-like, mobile domain protein
Chr4_-_11504739 0.25 AT4G21650.1
AT4G21650
Subtilase family protein
Chr4_-_9505736 0.25 AT4G16890.4
AT4G16890.1
AT4G16890.2
SNC1
TIR-NBS-LRR class disease resistance protein
Chr2_-_16377168 0.25 AT2G39220.1
PLP6
PATATIN-like protein 6
Chr3_-_6617951 0.25 AT3G19150.3
AT3G19150.1
KRP6
KIP-related protein 6
Chr3_+_17750710 0.25 AT3G48070.1
AT3G48070.3
AT3G48070.2
AT3G48070
RING/U-box superfamily protein
Chr5_+_15634444 0.25 AT5G39050.1
PMAT1
HXXXD-type acyl-transferase family protein
Chr3_+_7946408 0.25 AT3G22420.4
AT3G22420.3
AT3G22420.5
AT3G22420.1
AT3G22420.2
AT3G22420.6
WNK2
with no lysine (K) kinase 2
Chr3_+_2467862 0.25 AT3G07730.1
AT3G07730.2
AT3G07730
hypothetical protein
Chr1_+_3840877 0.24 AT1G11410.3
AT1G11410.2
AT1G11410
S-locus lectin protein kinase family protein
Chr5_-_23230749 0.24 AT5G57345.1
AT5G57345
transmembrane protein
Chr1_-_9286395 0.24 AT1G26800.1
AT1G26800
RING/U-box superfamily protein
Chr3_+_19051829 0.24 AT3G51325.1
AT3G51325
RING/U-box superfamily protein
Chr2_-_9231580 0.24 AT2G21560.1
AT2G21560
nucleolar-like protein
Chr4_+_11561123 0.24 AT4G21760.2
AT4G21760.1
BGLU47
beta-glucosidase 47
Chr2_-_10487749 0.24 AT2G24650.1
AT2G24650.7
AT2G24650.2
AT2G24650.5
AT2G24650.4
AT2G24650.3
AT2G24650
B3 domain-containing protein REM13
Chr1_+_2169977 0.24 AT1G07080.1
AT1G07080
Thioredoxin superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G24430

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322)
0.2 0.6 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.1 0.7 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.1 0.4 GO:0000032 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506)
0.1 0.7 GO:0080024 indolebutyric acid metabolic process(GO:0080024)
0.1 1.5 GO:0009610 response to symbiotic fungus(GO:0009610)
0.1 0.4 GO:0042766 nucleosome mobilization(GO:0042766)
0.1 0.4 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.1 0.4 GO:0010184 cytokinin transport(GO:0010184)
0.1 0.3 GO:0010062 negative regulation of cell fate specification(GO:0009996) negative regulation of trichoblast fate specification(GO:0010062) negative regulation of plant epidermal cell differentiation(GO:1903889)
0.1 0.5 GO:0034763 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.8 GO:0016584 nucleosome positioning(GO:0016584) negative regulation of chromatin silencing(GO:0031936)
0.1 0.3 GO:0010198 synergid death(GO:0010198)
0.1 0.2 GO:1901333 positive regulation of lateral root development(GO:1901333)
0.1 0.3 GO:0033120 positive regulation of RNA splicing(GO:0033120)
0.1 1.0 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.1 0.3 GO:0016137 glycoside metabolic process(GO:0016137)
0.1 1.0 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.1 0.2 GO:0033530 raffinose metabolic process(GO:0033530)
0.1 0.6 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.1 0.5 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.1 0.8 GO:0010021 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.1 0.4 GO:0090059 protoxylem development(GO:0090059)
0.1 0.2 GO:0001120 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.1 0.2 GO:0030643 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.1 0.3 GO:0042659 regulation of cell fate specification(GO:0042659)
0.1 0.6 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 0.2 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.2 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.1 0.4 GO:0015800 acidic amino acid transport(GO:0015800)
0.1 0.1 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.1 0.2 GO:0098532 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.1 0.2 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.1 0.3 GO:0010390 histone monoubiquitination(GO:0010390)
0.1 0.2 GO:0019499 cyanide metabolic process(GO:0019499)
0.1 0.5 GO:0080183 response to photooxidative stress(GO:0080183)
0.1 0.2 GO:0070827 cellular component maintenance(GO:0043954) chromatin maintenance(GO:0070827)
0.0 0.3 GO:0010018 far-red light signaling pathway(GO:0010018)
0.0 0.9 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.0 0.2 GO:0019310 inositol catabolic process(GO:0019310)
0.0 0.5 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.0 0.3 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.3 GO:0043570 maintenance of DNA repeat elements(GO:0043570)
0.0 0.1 GO:0045827 negative regulation of isoprenoid metabolic process(GO:0045827)
0.0 0.1 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.0 0.2 GO:0080168 abscisic acid transport(GO:0080168)
0.0 0.4 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 0.2 GO:0015669 gas transport(GO:0015669)
0.0 0.4 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.0 0.3 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.0 0.2 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.0 0.2 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.0 0.2 GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process(GO:0046901)
0.0 0.2 GO:0010731 protein glutathionylation(GO:0010731)
0.0 0.6 GO:0010161 red light signaling pathway(GO:0010161)
0.0 0.1 GO:0048451 petal formation(GO:0048451)
0.0 0.2 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.0 0.2 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.0 0.2 GO:0001578 microtubule bundle formation(GO:0001578)
0.0 0.1 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.0 0.2 GO:0046464 neutral lipid catabolic process(GO:0046461) acylglycerol catabolic process(GO:0046464)
0.0 0.1 GO:0009188 UDP biosynthetic process(GO:0006225) ribonucleoside diphosphate biosynthetic process(GO:0009188) pyrimidine ribonucleoside diphosphate metabolic process(GO:0009193) pyrimidine ribonucleoside diphosphate biosynthetic process(GO:0009194) UDP metabolic process(GO:0046048)
0.0 0.2 GO:0006021 inositol biosynthetic process(GO:0006021)
0.0 0.2 GO:0001732 formation of cytoplasmic translation initiation complex(GO:0001732)
0.0 0.5 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.1 GO:0048446 petal morphogenesis(GO:0048446)
0.0 0.4 GO:0006560 proline metabolic process(GO:0006560)
0.0 0.1 GO:0000023 maltose metabolic process(GO:0000023)
0.0 0.3 GO:0034471 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.0 0.4 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.0 0.4 GO:0042793 transcription from plastid promoter(GO:0042793)
0.0 0.2 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
0.0 0.1 GO:0018023 peptidyl-lysine trimethylation(GO:0018023)
0.0 1.1 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.2 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.0 0.1 GO:0009590 detection of gravity(GO:0009590)
0.0 0.7 GO:0010207 photosystem II assembly(GO:0010207)
0.0 1.6 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.0 0.2 GO:0009643 photosynthetic acclimation(GO:0009643)
0.0 0.1 GO:0010500 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.0 0.2 GO:0043447 cellular alkane metabolic process(GO:0043446) alkane biosynthetic process(GO:0043447)
0.0 1.1 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.2 GO:0006552 leucine catabolic process(GO:0006552)
0.0 0.2 GO:0010601 positive regulation of auxin biosynthetic process(GO:0010601) positive regulation of auxin metabolic process(GO:0090355)
0.0 0.2 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.0 0.1 GO:0048439 flower morphogenesis(GO:0048439)
0.0 0.1 GO:0060148 positive regulation of posttranscriptional gene silencing(GO:0060148)
0.0 0.8 GO:0010099 regulation of photomorphogenesis(GO:0010099)
0.0 0.1 GO:1903313 positive regulation of mRNA metabolic process(GO:1903313)
0.0 0.6 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.0 0.2 GO:0009803 cinnamic acid metabolic process(GO:0009803)
0.0 0.2 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.0 0.1 GO:1900363 regulation of mRNA polyadenylation(GO:1900363)
0.0 0.1 GO:0000719 photoreactive repair(GO:0000719)
0.0 0.1 GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway(GO:0009871)
0.0 0.2 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.0 0.1 GO:0006570 tyrosine metabolic process(GO:0006570)
0.0 0.1 GO:0043478 pigmentation(GO:0043473) pigment accumulation(GO:0043476) pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.0 0.3 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.2 GO:0031935 regulation of chromatin silencing(GO:0031935)
0.0 0.1 GO:0022403 cell cycle phase(GO:0022403) biological phase(GO:0044848) mitotic cell cycle phase(GO:0098763)
0.0 0.1 GO:0007099 centrosome cycle(GO:0007098) centriole replication(GO:0007099) centrosome organization(GO:0051297) centrosome duplication(GO:0051298) centriole assembly(GO:0098534)
0.0 0.2 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.1 GO:0042817 pyridoxal metabolic process(GO:0042817)
0.0 0.2 GO:0045903 positive regulation of translational fidelity(GO:0045903)
0.0 0.3 GO:0045230 UDP-L-arabinose biosynthetic process(GO:0033358) extracellular polysaccharide biosynthetic process(GO:0045226) capsule polysaccharide biosynthetic process(GO:0045227) capsule organization(GO:0045230) extracellular polysaccharide metabolic process(GO:0046379)
0.0 0.3 GO:1901000 regulation of response to salt stress(GO:1901000)
0.0 1.0 GO:0009817 defense response to fungus, incompatible interaction(GO:0009817)
0.0 0.1 GO:1901334 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.0 0.1 GO:2000693 positive regulation of seed maturation(GO:2000693)
0.0 1.2 GO:0010224 response to UV-B(GO:0010224)
0.0 0.1 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 1.3 GO:0008037 cell recognition(GO:0008037) recognition of pollen(GO:0048544)
0.0 0.1 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.0 0.8 GO:0098754 detoxification(GO:0098754)
0.0 0.1 GO:0008334 histone mRNA metabolic process(GO:0008334)
0.0 0.1 GO:0009920 cell plate formation involved in plant-type cell wall biogenesis(GO:0009920)
0.0 0.3 GO:0006030 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.1 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.0 0.1 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.0 0.2 GO:0010160 formation of organ boundary(GO:0010160) formation of anatomical boundary(GO:0048859)
0.0 0.2 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 0.1 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.0 0.1 GO:0080190 lateral growth(GO:0080190)
0.0 0.4 GO:0009904 chloroplast accumulation movement(GO:0009904)
0.0 0.1 GO:0048629 trichome patterning(GO:0048629)
0.0 0.2 GO:0071333 cellular response to glucose stimulus(GO:0071333)
0.0 0.1 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.0 0.2 GO:0006949 syncytium formation(GO:0006949)
0.0 0.1 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.1 GO:0010067 procambium histogenesis(GO:0010067)
0.0 0.2 GO:0010117 photoprotection(GO:0010117)
0.0 0.7 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 0.3 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.2 GO:0046149 chlorophyll catabolic process(GO:0015996) pigment catabolic process(GO:0046149)
0.0 0.1 GO:0061087 positive regulation of histone H3-K27 methylation(GO:0061087)
0.0 0.1 GO:0046688 response to copper ion(GO:0046688)
0.0 0.1 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 0.2 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.2 GO:0017183 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.1 GO:0070734 histone H3-K27 methylation(GO:0070734)
0.0 0.1 GO:1903428 positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.0 0.2 GO:0030026 cellular manganese ion homeostasis(GO:0030026)
0.0 0.3 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.2 GO:0015977 carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253)
0.0 0.1 GO:0007142 male meiosis II(GO:0007142)
0.0 0.4 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.1 GO:0006624 vacuolar protein processing(GO:0006624)
0.0 0.1 GO:0006893 Golgi to plasma membrane transport(GO:0006893)
0.0 0.0 GO:0010444 guard mother cell differentiation(GO:0010444)
0.0 0.2 GO:0042177 negative regulation of protein catabolic process(GO:0042177)
0.0 0.1 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.0 0.2 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.1 GO:0045851 pH reduction(GO:0045851)
0.0 0.2 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.0 0.1 GO:2000574 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.0 0.2 GO:0010540 basipetal auxin transport(GO:0010540)
0.0 0.5 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.2 GO:0010274 hydrotropism(GO:0010274)
0.0 0.1 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.0 0.2 GO:0046654 tetrahydrofolate biosynthetic process(GO:0046654)
0.0 0.2 GO:0015976 carbon utilization(GO:0015976)
0.0 0.0 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.0 0.0 GO:0046487 glyoxylate metabolic process(GO:0046487)
0.0 0.2 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.0 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.0 0.1 GO:0000379 tRNA-type intron splice site recognition and cleavage(GO:0000379)
0.0 0.2 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.1 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.0 GO:0044843 G1/S transition of mitotic cell cycle(GO:0000082) cell cycle G1/S phase transition(GO:0044843)
0.0 0.2 GO:0005983 starch catabolic process(GO:0005983)
0.0 0.0 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.1 GO:0010231 maintenance of seed dormancy(GO:0010231) maintenance of dormancy(GO:0097437)
0.0 0.1 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 0.3 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.1 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.3 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 0.2 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 0.0 GO:0045905 positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905)
0.0 0.5 GO:0071370 cellular response to gibberellin stimulus(GO:0071370)
0.0 0.2 GO:0048571 long-day photoperiodism(GO:0048571) long-day photoperiodism, flowering(GO:0048574)
0.0 0.1 GO:0010306 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.0 0.1 GO:0010262 somatic embryogenesis(GO:0010262)
0.0 0.1 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.0 0.1 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.1 GO:0032527 protein exit from endoplasmic reticulum(GO:0032527)
0.0 0.2 GO:0070297 regulation of ethylene-activated signaling pathway(GO:0010104) regulation of phosphorelay signal transduction system(GO:0070297)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0001673 male germ cell nucleus(GO:0001673)
0.1 0.5 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.1 0.5 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.1 0.8 GO:0000786 nucleosome(GO:0000786)
0.1 0.4 GO:0009538 photosystem I reaction center(GO:0009538)
0.0 0.2 GO:0005960 glycine cleavage complex(GO:0005960)
0.0 0.9 GO:0009508 plastid chromosome(GO:0009508)
0.0 0.2 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 0.2 GO:0008278 cohesin complex(GO:0008278)
0.0 0.2 GO:0070505 pollen coat(GO:0070505)
0.0 0.1 GO:0035371 microtubule plus-end(GO:0035371)
0.0 0.1 GO:0005775 vacuolar lumen(GO:0005775)
0.0 0.2 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.2 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.0 0.2 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.0 0.7 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.0 0.1 GO:0009522 photosystem I(GO:0009522)
0.0 0.2 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.0 0.3 GO:0090544 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.2 GO:0071006 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.0 0.2 GO:0005662 DNA replication factor A complex(GO:0005662)
0.0 0.2 GO:0030014 CCR4-NOT complex(GO:0030014)
0.0 0.1 GO:0002178 palmitoyltransferase complex(GO:0002178) serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.0 0.1 GO:0046695 SLIK (SAGA-like) complex(GO:0046695)
0.0 0.1 GO:0005813 centrosome(GO:0005813) centriole(GO:0005814)
0.0 0.2 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.0 0.3 GO:0033202 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202)
0.0 0.4 GO:0009986 cell surface(GO:0009986)
0.0 0.1 GO:0031298 replication fork protection complex(GO:0031298)
0.0 0.2 GO:0000124 SAGA complex(GO:0000124)
0.0 0.1 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0 0.1 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.3 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 0.5 GO:0009521 photosystem(GO:0009521)
0.0 2.3 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.2 GO:0008023 transcription elongation factor complex(GO:0008023)
0.0 0.1 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0 0.7 GO:0010319 stromule(GO:0010319)
0.0 0.1 GO:0033263 CORVET complex(GO:0033263)
0.0 0.2 GO:0009368 endopeptidase Clp complex(GO:0009368)
0.0 0.2 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.0 0.2 GO:0010168 ER body(GO:0010168)
0.0 0.3 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.0 0.1 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.0 0.2 GO:0048226 Casparian strip(GO:0048226)
0.0 0.1 GO:0035267 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.1 GO:0005640 nuclear outer membrane(GO:0005640)
0.0 0.1 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 0.2 GO:0005763 mitochondrial small ribosomal subunit(GO:0005763)
0.0 0.1 GO:0030286 dynein complex(GO:0030286)
0.0 0.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.3 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.3 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.1 GO:0031380 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 0.2 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.0 0.6 GO:0098573 intrinsic component of mitochondrial membrane(GO:0098573)
0.0 0.2 GO:0005669 transcription factor TFIID complex(GO:0005669)
0.0 0.1 GO:0000214 tRNA-intron endonuclease complex(GO:0000214)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.2 0.7 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.2 1.1 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.2 0.5 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.2 0.8 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.1 0.4 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.1 0.4 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.1 0.5 GO:0052593 tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596)
0.1 0.5 GO:1990269 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.1 0.3 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.1 0.4 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 1.1 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.1 0.3 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.1 0.3 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.1 0.3 GO:0000249 C-22 sterol desaturase activity(GO:0000249)
0.1 0.6 GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)(GO:0016703)
0.1 0.4 GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity(GO:0033744) L-methionine-(S)-S-oxide reductase activity(GO:0036456)
0.1 0.6 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 0.6 GO:0004096 catalase activity(GO:0004096)
0.1 0.2 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.1 0.2 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.1 0.2 GO:0016672 oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor(GO:0016672) glutathione dehydrogenase (ascorbate) activity(GO:0045174)
0.1 0.5 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 0.2 GO:0010331 gibberellin binding(GO:0010331)
0.1 0.5 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.2 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.1 0.2 GO:0005344 oxygen transporter activity(GO:0005344)
0.1 0.4 GO:0033201 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.1 0.3 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.1 0.4 GO:0030332 cyclin binding(GO:0030332)
0.1 0.2 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.1 0.2 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.1 0.3 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 0.2 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.1 0.2 GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
0.1 0.2 GO:0004150 dihydroneopterin aldolase activity(GO:0004150)
0.0 0.2 GO:0050113 inositol oxygenase activity(GO:0050113)
0.0 0.1 GO:0022858 L-alanine transmembrane transporter activity(GO:0015180) alanine transmembrane transporter activity(GO:0022858)
0.0 0.2 GO:0003987 acetate-CoA ligase activity(GO:0003987)
0.0 0.1 GO:0031219 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.0 0.2 GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537)
0.0 0.1 GO:0004134 4-alpha-glucanotransferase activity(GO:0004134)
0.0 0.1 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.0 0.2 GO:0070034 telomerase RNA binding(GO:0070034)
0.0 0.2 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.0 0.5 GO:0008061 chitin binding(GO:0008061)
0.0 0.4 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.2 GO:0004133 glycogen debranching enzyme activity(GO:0004133) isoamylase activity(GO:0019156)
0.0 0.3 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 0.3 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 0.4 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.0 0.2 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.0 0.4 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
0.0 0.1 GO:0010242 oxygen evolving activity(GO:0010242)
0.0 0.2 GO:0030527 structural constituent of chromatin(GO:0030527)
0.0 0.1 GO:0033862 UMP kinase activity(GO:0033862)
0.0 0.1 GO:0050302 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 0.3 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.2 GO:0050017 L-3-cyanoalanine synthase activity(GO:0050017)
0.0 0.2 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.0 0.2 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.0 0.2 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.0 0.1 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.0 0.1 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.0 0.1 GO:0030941 chloroplast targeting sequence binding(GO:0030941)
0.0 0.2 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.0 0.2 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.0 0.1 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.0 0.3 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 0.2 GO:0005047 signal recognition particle binding(GO:0005047)
0.0 0.5 GO:0004022 alcohol dehydrogenase (NAD) activity(GO:0004022)
0.0 0.6 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.3 GO:0034647 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 0.3 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.0 0.1 GO:0008301 DNA binding, bending(GO:0008301)
0.0 0.1 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.0 0.1 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.1 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0 0.4 GO:0031491 nucleosome binding(GO:0031491)
0.0 0.6 GO:0080031 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.0 0.1 GO:0051738 xanthophyll binding(GO:0051738)
0.0 0.1 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.0 0.1 GO:0004488 methenyltetrahydrofolate cyclohydrolase activity(GO:0004477) methylenetetrahydrofolate dehydrogenase (NADP+) activity(GO:0004488)
0.0 0.1 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.0 0.3 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.2 GO:0019137 thioglucosidase activity(GO:0019137)
0.0 0.1 GO:0034511 U3 snoRNA binding(GO:0034511)
0.0 0.2 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.0 0.2 GO:0008083 growth factor activity(GO:0008083)
0.0 0.1 GO:0070547 L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547)
0.0 0.3 GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.0 0.1 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.0 0.1 GO:0004349 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.0 0.2 GO:0019210 kinase inhibitor activity(GO:0019210)
0.0 0.1 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.0 0.3 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.0 0.1 GO:0051765 inositol tetrakisphosphate kinase activity(GO:0051765)
0.0 0.1 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.0 0.3 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.3 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.0 0.1 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.0 0.1 GO:0098599 palmitoyl hydrolase activity(GO:0098599)
0.0 0.4 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 0.1 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.0 1.1 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.2 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.0 0.1 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.2 GO:0002020 protease binding(GO:0002020)
0.0 0.1 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.9 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.1 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.0 0.2 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.0 0.2 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.0 0.1 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 0.3 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.0 0.2 GO:0017070 U6 snRNA binding(GO:0017070)
0.0 0.2 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.0 0.2 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.1 GO:0001047 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.0 0.1 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.0 0.3 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.1 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.0 2.2 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.3 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.0 0.1 GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.0 0.2 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 0.1 GO:0009916 alternative oxidase activity(GO:0009916)
0.0 0.4 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.1 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.2 GO:0000210 NAD+ diphosphatase activity(GO:0000210)
0.0 0.1 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.0 0.1 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 0.1 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.0 0.1 GO:0070063 RNA polymerase binding(GO:0070063)
0.0 0.2 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.2 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.2 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 0.2 GO:0045551 cinnamyl-alcohol dehydrogenase activity(GO:0045551)
0.0 0.3 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.1 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.0 0.2 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.1 GO:0045502 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.0 0.1 GO:0098847 single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847)
0.0 0.0 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.0 0.1 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367)
0.0 0.1 GO:0072328 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.0 0.1 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.0 0.4 GO:0016597 amino acid binding(GO:0016597)
0.0 0.2 GO:0008252 nucleotidase activity(GO:0008252)
0.0 0.1 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.9 GO:0042393 histone binding(GO:0042393)
0.0 0.0 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
0.0 0.1 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.0 0.0 GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity(GO:0008534)
0.0 0.1 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.0 0.0 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.0 0.2 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.1 GO:0048038 primary amine oxidase activity(GO:0008131) quinone binding(GO:0048038)
0.0 0.1 GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity(GO:0043878)
0.0 0.1 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.2 GO:0051117 ATPase binding(GO:0051117)
0.0 0.0 GO:0044389 ubiquitin-like protein ligase binding(GO:0044389)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 PID AMB2 NEUTROPHILS PATHWAY amb2 Integrin signaling
0.0 0.2 NABA MATRISOME ASSOCIATED Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors
0.0 0.2 PID ATF2 PATHWAY ATF-2 transcription factor network
0.0 0.2 NABA MATRISOME Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins
0.0 0.2 PID HDAC CLASSI PATHWAY Signaling events mediated by HDAC Class I
0.0 0.1 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.0 0.2 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.0 0.0 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.0 0.0 SIG CHEMOTAXIS Genes related to chemotaxis

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.1 0.2 REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION Genes involved in Apoptosis induced DNA fragmentation
0.1 0.2 REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK
0.1 0.2 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.0 0.2 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.0 0.4 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation
0.0 0.2 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.0 0.2 REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS Genes involved in Glycerophospholipid biosynthesis
0.0 0.2 REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
0.0 0.1 REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS Genes involved in Homologous recombination repair of replication-independent double-strand breaks