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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G23340
Z-value: 1.32
Transcription factors associated with AT2G23340
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G23340
|
AT2G23340 | DREB and EAR motif protein 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DEAR3 | arTal_v1_Chr2_+_9937792_9937792 | -0.30 | 3.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 2.50 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 2.31 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 1.99 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 1.95 |
AT4G24570.1
|
dicarboxylate carrier 2 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 1.92 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 1.86 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr1_-_9956960_9956980 Show fit | 1.64 |
AT1G28370.1
AT1G28370.2 |
ERF domain protein 11 |
|
| arTal_v1_Chr1_+_27521944_27521944 Show fit | 1.61 |
AT1G73190.1
|
Aquaporin-like superfamily protein |
|
| arTal_v1_Chr2_+_12709721_12709721 Show fit | 1.57 |
AT2G29750.1
|
UDP-glucosyl transferase 71C1 |
|
| arTal_v1_Chr1_+_24349399_24349632 Show fit | 1.48 |
AT1G65486.3
AT1G65486.4 AT1G65486.1 AT1G65486.2 |
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G23340
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 3.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 2.9 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.2 | 2.8 | GO:0009554 | megasporogenesis(GO:0009554) |
| 0.8 | 2.4 | GO:0071422 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.2 | 2.4 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
| 0.2 | 2.2 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.1 | 2.0 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.6 | 1.9 | GO:0015840 | urea transport(GO:0015840) |
| 0.5 | 1.9 | GO:0006097 | glyoxylate cycle(GO:0006097) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 5.7 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 5.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.4 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.3 | 3.1 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 2.2 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 2.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.6 | 1.9 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.5 | 1.4 | GO:0070382 | exocytic vesicle(GO:0070382) |
| 0.4 | 1.2 | GO:0043667 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.4 | GO:0020037 | heme binding(GO:0020037) |
| 0.2 | 4.1 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 2.8 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.8 | 2.4 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.1 | 2.4 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.2 | 2.2 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 0.1 | 2.2 | GO:0005179 | hormone activity(GO:0005179) |
| 0.2 | 2.1 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
| 0.1 | 2.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 0.7 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.0 | PID AURORA A PATHWAY | Aurora A signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 1.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 0.9 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.1 | 0.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.4 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.3 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.2 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |