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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G23320
Z-value: 1.87
Transcription factors associated with AT2G23320
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G23320
|
AT2G23320 | WRKY DNA-binding protein 15 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY15 | arTal_v1_Chr2_+_9924886_9924933 | -0.17 | 5.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 2.79 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 2.38 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_+_4662698_4662752 Show fit | 2.37 |
AT1G13609.1
AT1G13609.2 |
Defensin-like (DEFL) family protein |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 2.26 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 2.22 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 2.21 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr5_-_16252434_16252434 Show fit | 2.17 |
AT5G40590.1
|
Cysteine/Histidine-rich C1 domain family protein |
|
| arTal_v1_Chr2_-_17199320_17199454 Show fit | 1.93 |
AT2G41240.2
AT2G41240.1 |
basic helix-loop-helix protein 100 |
|
| arTal_v1_Chr3_+_5025383_5025383 Show fit | 1.86 |
AT3G14940.2
|
phosphoenolpyruvate carboxylase 3 |
|
| arTal_v1_Chr1_-_1527360_1527360 Show fit | 1.85 |
AT1G05250.1
|
Peroxidase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G23320
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 18.3 | GO:0010054 | trichoblast differentiation(GO:0010054) |
| 0.2 | 10.7 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.0 | 8.9 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 0.1 | 7.9 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
| 0.2 | 7.5 | GO:0010043 | response to zinc ion(GO:0010043) |
| 0.0 | 7.1 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 6.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 6.8 | GO:0010101 | post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102) |
| 0.1 | 6.8 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.2 | 6.6 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 84.0 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 58.5 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 41.9 | GO:0071944 | cell periphery(GO:0071944) |
| 0.1 | 23.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 15.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 13.7 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 11.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 9.2 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.1 | 9.1 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 6.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 22.2 | GO:0005198 | structural molecule activity(GO:0005198) |
| 0.2 | 19.6 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 10.2 | GO:0003743 | translation initiation factor activity(GO:0003743) |
| 0.1 | 10.1 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 8.8 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 7.6 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.1 | 7.4 | GO:0015399 | primary active transmembrane transporter activity(GO:0015399) |
| 0.2 | 6.5 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.0 | 6.3 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.2 | 5.8 | GO:0004568 | chitinase activity(GO:0004568) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 2.1 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.4 | 1.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.5 | 1.5 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.4 | 1.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.3 | 1.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.3 | 1.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 1.0 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 0.9 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.3 | 0.9 | PID RAS PATHWAY | Regulation of Ras family activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.8 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.2 | 2.5 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
| 0.3 | 2.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.7 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.4 | 1.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.5 | 1.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.3 | 1.5 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.0 | 1.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 1.4 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.4 | 1.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |