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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G23290
Z-value: 1.09
Transcription factors associated with AT2G23290
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G23290
|
AT2G23290 | myb domain protein 70 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB70 | arTal_v1_Chr2_-_9906032_9906032 | 0.03 | 9.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.00 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.72 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.61 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.47 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.45 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 1.42 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 1.41 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr3_-_12451556_12451556 Show fit | 1.39 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
| arTal_v1_Chr5_+_21603569_21603569 Show fit | 1.26 |
AT5G53250.1
|
arabinogalactan protein 22 |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 1.16 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G23290
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 9.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 3.9 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 3.3 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.7 | 2.9 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.4 | 2.7 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 2.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 2.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.2 | 2.5 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.0 | 2.4 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 39.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 12.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 2.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 2.4 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 2.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 2.1 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.8 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.4 | GO:0044421 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.0 | 1.0 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.4 | 4.6 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 3.8 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.0 | 3.2 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.0 | 3.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.5 | 2.7 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 2.6 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.1 | 2.6 | GO:0010427 | abscisic acid binding(GO:0010427) |
| 0.3 | 2.4 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.2 | 2.4 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.1 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.0 | 0.1 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.5 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.2 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.1 | 0.1 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.0 | 0.1 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.0 | 0.1 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |