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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G22430
Z-value: 0.91
Transcription factors associated with AT2G22430
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G22430
|
AT2G22430 | homeobox protein 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB6 | arTal_v1_Chr2_-_9527845_9527845 | 0.07 | 8.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.01 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_+_7434199_7434199 Show fit | 0.89 |
AT4G12545.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_22893151_22893151 Show fit | 0.83 |
AT5G56540.1
|
arabinogalactan protein 14 |
|
| arTal_v1_Chr5_+_21603569_21603569 Show fit | 0.78 |
AT5G53250.1
|
arabinogalactan protein 22 |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 0.78 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 0.77 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 0.76 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr2_+_19605030_19605030 Show fit | 0.76 |
AT2G47880.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr2_-_6960216_6960216 Show fit | 0.75 |
AT2G16005.1
|
MD-2-related lipid recognition domain-containing protein |
|
| arTal_v1_Chr3_+_16770888_16770888 Show fit | 0.75 |
AT3G45680.1
|
Major facilitator superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G22430
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.2 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.0 | 2.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 1.6 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.0 | 1.6 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.1 | 1.4 | GO:0030091 | protein repair(GO:0030091) |
| 0.0 | 1.2 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 1.2 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
| 0.0 | 1.1 | GO:0042044 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.0 | 1.1 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.0 | 1.1 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 3.2 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 2.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 1.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 0.7 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.1 | 0.6 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
| 0.1 | 0.6 | GO:0042555 | MCM complex(GO:0042555) |
| 0.0 | 0.6 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.7 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 3.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 2.3 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 2.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 1.6 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.1 | 1.4 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 1.4 | GO:0005179 | hormone activity(GO:0005179) |
| 0.1 | 1.3 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 1.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.1 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.0 | 0.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.0 | 0.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.2 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME TRANSCRIPTION COUPLED NER TC NER | Genes involved in Transcription-coupled NER (TC-NER) |
| 0.0 | 0.1 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.0 | 0.1 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.1 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |