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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G20180
Z-value: 1.56
Transcription factors associated with AT2G20180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G20180
|
AT2G20180 | phytochrome interacting factor 3-like 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PIL5 | arTal_v1_Chr2_-_8706900_8707009 | 0.13 | 6.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_17441242_17441242 Show fit | 1.59 |
AT3G47340.3
AT3G47340.2 |
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr3_-_17440176_17440176 Show fit | 1.55 |
AT3G47340.4
|
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr3_-_17441431_17441431 Show fit | 1.53 |
AT3G47340.1
|
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr4_-_13729002_13729002 Show fit | 1.08 |
AT4G27450.1
|
aluminum induced protein with YGL and LRDR motifs |
|
| arTal_v1_Chr5_-_388123_388231 Show fit | 1.06 |
AT5G02020.2
AT5G02020.1 |
E3 ubiquitin-protein ligase RLIM-like protein |
|
| arTal_v1_Chr1_-_4243201_4243229 Show fit | 1.06 |
AT1G12440.1
AT1G12440.3 |
A20/AN1-like zinc finger family protein |
|
| arTal_v1_Chr1_-_4242963_4242963 Show fit | 1.05 |
AT1G12440.2
|
A20/AN1-like zinc finger family protein |
|
| arTal_v1_Chr3_+_22635803_22635816 Show fit | 0.95 |
AT3G61160.3
AT3G61160.6 AT3G61160.5 AT3G61160.4 AT3G61160.2 AT3G61160.1 |
Protein kinase superfamily protein |
|
| arTal_v1_Chr3_-_3091766_3091766 Show fit | 0.89 |
AT3G10020.2
|
plant/protein |
|
| arTal_v1_Chr1_+_21043348_21043348 Show fit | 0.86 |
AT1G56220.2
AT1G56220.1 |
Dormancy/auxin associated family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G20180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 4.7 | GO:0070982 | cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
| 0.0 | 4.3 | GO:0001666 | response to hypoxia(GO:0001666) |
| 0.0 | 2.4 | GO:0042542 | response to hydrogen peroxide(GO:0042542) |
| 0.0 | 2.3 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161) |
| 0.7 | 2.1 | GO:0010203 | response to very low fluence red light stimulus(GO:0010203) |
| 0.2 | 1.7 | GO:0009061 | anaerobic respiration(GO:0009061) |
| 0.1 | 1.5 | GO:0010044 | response to aluminum ion(GO:0010044) |
| 0.1 | 1.2 | GO:0009641 | shade avoidance(GO:0009641) |
| 0.0 | 1.1 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.3 | 1.0 | GO:0035606 | protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.5 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 1.6 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.1 | 0.8 | GO:0010445 | nuclear dicing body(GO:0010445) |
| 0.0 | 0.8 | GO:0008023 | transcription elongation factor complex(GO:0008023) |
| 0.1 | 0.5 | GO:0000439 | core TFIIH complex(GO:0000439) |
| 0.0 | 0.5 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
| 0.0 | 0.5 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.1 | 0.4 | GO:0030130 | clathrin coat of trans-Golgi network vesicle(GO:0030130) clathrin coat of coated pit(GO:0030132) |
| 0.0 | 0.4 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 0.4 | GO:0031970 | organelle envelope lumen(GO:0031970) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.7 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.0 | 2.8 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.6 | 2.2 | GO:0031516 | far-red light photoreceptor activity(GO:0031516) |
| 0.0 | 2.1 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.0 | 1.7 | GO:0016597 | amino acid binding(GO:0016597) |
| 0.0 | 1.1 | GO:0097602 | cullin family protein binding(GO:0097602) |
| 0.3 | 1.0 | GO:0035605 | peptidyl-cysteine S-nitrosylase activity(GO:0035605) |
| 0.1 | 0.9 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
| 0.1 | 0.8 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 0.7 | GO:0008184 | glycogen phosphorylase activity(GO:0008184) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |