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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G20180

Z-value: 1.56

Transcription factors associated with AT2G20180

Gene Symbol Gene ID Gene Info
AT2G20180
AT2G20180 phytochrome interacting factor 3-like 5

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PIL5arTal_v1_Chr2_-_8706900_87070090.136.7e-01Click!

Activity profile of AT2G20180 motif

Sorted Z-values of AT2G20180 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_17441242 1.59 AT3G47340.3
AT3G47340.2
ASN1
glutamine-dependent asparagine synthase 1
Chr3_-_17440176 1.55 AT3G47340.4
ASN1
glutamine-dependent asparagine synthase 1
Chr3_-_17441431 1.53 AT3G47340.1
ASN1
glutamine-dependent asparagine synthase 1
Chr4_-_13729002 1.08 AT4G27450.1
AT4G27450
aluminum induced protein with YGL and LRDR motifs
Chr5_-_388123 1.06 AT5G02020.2
AT5G02020.1
SIS
E3 ubiquitin-protein ligase RLIM-like protein
Chr1_-_4243201 1.06 AT1G12440.1
AT1G12440.3
AT1G12440
A20/AN1-like zinc finger family protein
Chr1_-_4242963 1.05 AT1G12440.2
AT1G12440
A20/AN1-like zinc finger family protein
Chr3_+_22635803 0.95 AT3G61160.3
AT3G61160.6
AT3G61160.5
AT3G61160.4
AT3G61160.2
AT3G61160.1
AT3G61160
Protein kinase superfamily protein
Chr3_-_3091766 0.89 AT3G10020.2
AT3G10020
plant/protein
Chr1_+_21043348 0.86 AT1G56220.2
AT1G56220.1
AT1G56220
Dormancy/auxin associated family protein
Chr1_+_21042951 0.85 AT1G56220.4
AT1G56220.5
AT1G56220.3
AT1G56220
Dormancy/auxin associated family protein
Chr1_-_9935264 0.85 AT1G28330.3
AT1G28330.2
AT1G28330.4
AT1G28330.1
AT1G28330.6
AT1G28330.5
DYL1
dormancy-associated protein-like 1
Chr2_-_19370478 0.83 AT2G47180.1
GolS1
galactinol synthase 1
Chr1_+_29782273 0.83 AT1G79170.1
AT1G79170
transmembrane protein
Chr5_-_26933286 0.82 AT5G67480.1
AT5G67480.3
BT4
BTB and TAZ domain protein 4
Chr3_-_3091922 0.80 AT3G10020.1
AT3G10020
plant/protein
Chr5_-_26932825 0.78 AT5G67480.2
BT4
BTB and TAZ domain protein 4
Chr2_+_2026162 0.75 AT2G05520.4
AT2G05520.5
AT2G05520.6
AT2G05520.3
GRP-3
glycine-rich protein 3
Chr1_-_3100695 0.75 AT1G09570.5
AT1G09570.1
AT1G09570.6
PHYA
phytochrome A
Chr1_+_1706736 0.72 AT1G05690.1
BT3
BTB and TAZ domain protein 3
Chr2_+_2025991 0.72 AT2G05520.2
AT2G05520.1
GRP-3
glycine-rich protein 3
Chr1_-_3099830 0.72 AT1G09570.4
AT1G09570.3
PHYA
phytochrome A
Chr1_-_977761 0.72 AT1G03850.1
AT1G03850.2
AT1G03850.3
GRXS13
Glutaredoxin family protein
Chr5_-_22115539 0.72 AT5G54470.1
BBX29
B-box type zinc finger family protein
Chr3_+_3923735 0.71 AT3G12320.2
AT3G12320
hypothetical protein
Chr5_-_26810116 0.70 AT5G67190.1
DEAR2
DREB and EAR motif protein 2
Chr5_+_579744 0.69 AT5G02580.1
AT5G02580.3
AT5G02580.2
AT5G02580
argininosuccinate lyase
Chr3_-_17306633 0.69 AT3G46970.1
PHS2
alpha-glucan phosphorylase 2
Chr1_-_3100357 0.68 AT1G09570.2
PHYA
phytochrome A
Chr3_+_3923515 0.68 AT3G12320.1
AT3G12320
hypothetical protein
Chr3_+_3923969 0.68 AT3G12320.3
AT3G12320
hypothetical protein
Chr4_+_6745100 0.64 AT4G11040.2
AT4G11040.1
AT4G11040
Protein phosphatase 2C family protein
Chr1_-_9092560 0.63 AT1G26270.1
AT1G26270
Phosphatidylinositol 3- and 4-kinase family protein
Chr5_-_15713158 0.60 AT5G39240.1
AT5G39240
transcription factor UPBEAT-like protein
Chr1_+_900732 0.59 AT1G03610.2
AT1G03610.1
AT1G03610
plant/protein (DUF789)
Chr5_+_22779614 0.59 AT5G56270.1
WRKY2
WRKY DNA-binding protein 2
Chr1_-_26474786 0.58 AT1G70290.2
AT1G70290.1
TPS8
trehalose-6-phosphatase synthase S8
Chr3_-_1643174 0.56 AT3G05640.2
AT3G05640.1
AT3G05640.3
AT3G05640
Protein phosphatase 2C family protein
Chr5_-_8358546 0.56 AT5G24470.1
PRR5
two-component response regulator-like protein
Chr3_-_7395096 0.56 AT3G21090.1
ABCG15
ABC-2 type transporter family protein
Chr1_+_30241452 0.55 AT1G80440.1
AT1G80440
Galactose oxidase/kelch repeat superfamily protein
Chr4_+_17336123 0.55 AT4G36790.1
AT4G36790
Major facilitator superfamily protein
Chr5_+_24105041 0.54 AT5G59830.2
AT5G59830.1
AT5G59830.3
AT5G59830
DNA-binding protein
Chr2_-_16950705 0.54 AT2G40610.1
EXPA8
expansin A8
Chr2_-_17837618 0.53 AT2G42870.1
PAR1
phy rapidly regulated 1
Chr1_+_7143805 0.52 AT1G20620.7
CAT3
catalase 3
Chr1_+_28335502 0.52 AT1G75490.1
AT1G75490
Integrase-type DNA-binding superfamily protein
Chr1_+_7142972 0.52 AT1G20620.1
AT1G20620.5
AT1G20620.2
AT1G20620.4
AT1G20620.6
CAT3
catalase 3
Chr4_+_12086898 0.52 AT4G23060.1
IQD22
IQ-domain 22
Chr1_+_22198266 0.51 AT1G60190.1
PUB19
ARM repeat superfamily protein
Chr3_+_23168061 0.51 AT3G62650.2
AT3G62650
hypothetical protein
Chr3_+_23168454 0.51 AT3G62650.1
AT3G62650
hypothetical protein
Chr4_-_17806705 0.51 AT4G37870.1
PCK1
phosphoenolpyruvate carboxykinase 1
Chr1_-_26811848 0.50 AT1G71080.1
AT1G71080
RNA polymerase II transcription elongation factor
Chr2_+_19000180 0.50 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
Chr1_-_11164928 0.50 AT1G31240.1
AT1G31240
Bromodomain transcription factor
Chr1_-_2195798 0.49 AT1G07150.2
MAPKKK13
mitogen-activated protein kinase kinase kinase 13
Chr1_+_270797 0.49 AT1G01730.1
AT1G01730
hypothetical protein
Chr4_+_15676240 0.49 AT4G32480.1
AT4G32480
sugar phosphate exchanger, putative (DUF506)
Chr2_+_16006749 0.48 AT2G38210.1
PDX1L4
putative PDX1-like protein 4
Chr5_-_26850040 0.48 AT5G67290.1
AT5G67290
FAD-dependent oxidoreductase family protein
Chr5_+_8589457 0.48 AT5G24930.1
COL4
zinc finger CONSTANS-like protein
Chr5_-_26246960 0.48 AT5G65660.1
AT5G65660
hydroxyproline-rich glycoprotein family protein
Chr1_-_2195996 0.48 AT1G07150.1
MAPKKK13
mitogen-activated protein kinase kinase kinase 13
Chr1_-_467873 0.48 AT1G02340.2
AT1G02340.1
HFR1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_24090645 0.47 AT5G59790.1
AT5G59790.2
AT5G59790
UPSTREAM OF FLC protein (DUF966)
Chr5_+_26854022 0.47 AT5G67300.1
MYBR1
myb domain protein r1
Chr2_+_15830870 0.47 AT2G37750.1
AT2G37750
hypothetical protein
Chr1_-_28271948 0.45 AT1G75340.3
AT1G75340.2
AT1G75340.1
AT1G75340
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr1_-_27498062 0.45 AT1G73120.1
AT1G73120
F-box/RNI superfamily protein
Chr3_-_3238267 0.45 AT3G10410.1
SCPL49
SERINE CARBOXYPEPTIDASE-LIKE 49
Chr3_-_3235289 0.44 AT3G10405.1
AT3G10405
vacuolar acid trehalase
Chr1_+_26604855 0.44 AT1G70560.1
TAA1
tryptophan aminotransferase of Arabidopsis 1
Chr5_-_25429255 0.43 AT5G63520.1
AT5G63520
F-box/LRR protein
Chr3_-_6804296 0.43 AT3G19580.1
ZF2
zinc-finger protein 2
Chr1_-_23786800 0.43 AT1G64080.1
MAKR2
membrane-associated kinase regulator
Chr2_-_16106935 0.43 AT2G38465.1
AT2G38465
hypothetical protein
Chr1_-_4229211 0.42 AT1G12420.1
ACR8
ACT domain repeat 8
Chr1_-_4228471 0.42 AT1G12420.2
ACR8
ACT domain repeat 8
Chr5_-_10295283 0.42 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
Chr4_+_13653579 0.42 AT4G27260.1
WES1
Auxin-responsive GH3 family protein
Chr5_+_4441858 0.42 AT5G13760.1
AT5G13760
Plasma-membrane choline transporter family protein
Chr3_-_729638 0.42 AT3G03150.1
AT3G03150
hypothetical protein
Chr3_-_21293158 0.42 AT3G57520.2
AT3G57520.3
AT3G57520.1
SIP2
seed imbibition 2
Chr4_+_17643110 0.41 AT4G37550.4
AT4G37550.1
AT4G37550.2
AT4G37550
Acetamidase/Formamidase family protein
Chr1_+_27786864 0.41 AT1G73885.1
AT1G73885
AT-rich interactive domain protein
Chr2_+_18792864 0.40 AT2G45620.1
AT2G45620
Nucleotidyltransferase family protein
Chr3_-_8638735 0.40 AT3G23910.2
AT3G23910
reverse transcriptase-like protein
Chr3_-_11384145 0.40 AT3G29575.1
AT3G29575.4
AT3G29575.3
AFP3
ABI five binding protein 3
Chr1_-_6173273 0.39 AT1G17940.1
AT1G17940.4
AT1G17940.2
AT1G17940
Endosomal targeting BRO1-like domain-containing protein
Chr1_+_26416872 0.39 AT1G70150.1
AT1G70150
zinc ion binding protein
Chr4_+_12376122 0.39 AT4G23750.1
AT4G23750.2
CRF2
cytokinin response factor 2
Chr4_+_17643548 0.39 AT4G37550.6
AT4G37550.3
AT4G37550
Acetamidase/Formamidase family protein
Chr5_-_22310332 0.39 AT5G54950.1
AT5G54950
Aconitase family protein
Chr4_+_13675537 0.39 AT4G27310.1
BBX28
B-box type zinc finger family protein
Chr2_-_16948712 0.38 AT2G40600.1
AT2G40600
appr-1-p processing enzyme family protein
Chr5_-_4570994 0.38 AT5G14170.1
CHC1
SWIB/MDM2 domain superfamily protein
Chr1_+_8061751 0.38 AT1G22770.1
GI
gigantea protein (GI)
Chr1_+_19831352 0.38 AT1G53180.2
AT1G53180.3
AT1G53180.1
AT1G53180
hypothetical protein
Chr3_-_17910736 0.37 AT3G48360.3
AT3G48360.1
AT3G48360.2
BT2
BTB and TAZ domain protein 2
Chr5_-_4430901 0.37 AT5G13730.1
SIG4
sigma factor 4
Chr1_-_6173025 0.37 AT1G17940.3
AT1G17940.5
AT1G17940
Endosomal targeting BRO1-like domain-containing protein
Chr4_-_12725835 0.37 AT4G24660.1
HB22
homeobox protein 22
Chr3_-_8639580 0.36 AT3G23910.1
AT3G23910
reverse transcriptase-like protein
Chr5_-_20940895 0.36 AT5G51550.1
EXL3
EXORDIUM like 3
Chr3_-_18628888 0.36 AT3G50240.3
AT3G50240.2
AT3G50240.4
AT3G50240.1
KICP-02
ATP binding microtubule motor family protein
Chr3_+_22888268 0.35 AT3G61830.2
ARF18
auxin response factor 18
Chr5_+_4724407 0.35 AT5G14650.1
AT5G14650.2
AT5G14650
Pectin lyase-like superfamily protein
Chr5_+_3396356 0.35 AT5G10745.2
AT5G10745.3
AT5G10745
transmembrane protein
Chr1_+_1073600 0.35 AT1G04130.2
TPR2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_17038955 0.35 AT4G36000.1
AT4G36000.2
AT4G36000
Pathogenesis-related thaumatin superfamily protein
Chr4_-_17050608 0.35 AT4G36040.1
J11
Chaperone DnaJ-domain superfamily protein
Chr3_+_22221972 0.34 AT3G60150.1
AT3G60150.2
AT3G60150.3
AT3G60150.4
AT3G60150
NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598)
Chr5_+_16893849 0.34 AT5G42250.1
AT5G42250
Zinc-binding alcohol dehydrogenase family protein
Chr1_+_28746833 0.34 AT1G76600.1
AT1G76600
poly polymerase
Chr2_-_18907973 0.34 AT2G45950.2
AT2G45950.1
AT2G45950.3
SK20
SKP1-like 20
Chr4_-_17334355 0.34 AT4G36780.1
BEH2
BES1/BZR1 homolog 2
Chr3_-_6804114 0.34 AT3G19580.2
ZF2
zinc-finger protein 2
Chr3_+_4791448 0.33 AT3G14360.1
AT3G14360
alpha/beta-Hydrolases superfamily protein
Chr1_-_18680300 0.33 AT1G50420.1
SCL3
scarecrow-like 3
Chr5_+_2681996 0.33 AT5G08335.1
ATSTE14B
Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Chr1_+_469818 0.33 AT1G02350.1
AT1G02350
protoporphyrinogen oxidase-like protein
Chr4_-_12725637 0.33 AT4G24660.2
HB22
homeobox protein 22
Chr3_+_22887889 0.32 AT3G61830.1
ARF18
auxin response factor 18
Chr2_-_8533779 0.32 AT2G19800.1
MIOX2
myo-inositol oxygenase 2
Chr4_+_17643335 0.32 AT4G37550.5
AT4G37550
Acetamidase/Formamidase family protein
Chr3_+_7912905 0.32 AT3G22380.2
AT3G22380.3
AT3G22380.1
TIC
time for coffee
Chr3_-_2561848 0.32 AT3G08020.1
AT3G08020
PHD finger family protein
Chr1_-_6754073 0.32 AT1G19490.1
AT1G19490
Basic-leucine zipper (bZIP) transcription factor family protein
Chr1_+_9748506 0.32 AT1G27980.1
DPL1
dihydrosphingosine phosphate lyase
Chr1_-_26324946 0.31 AT1G69890.1
AT1G69890
actin cross-linking protein (DUF569)
Chr1_-_11978622 0.31 AT1G33060.2
AT1G33060.1
NAC014
NAC 014
Chr1_+_28932868 0.31 AT1G76990.3
AT1G76990.2
ACR3
ACT domain repeat 3
Chr5_+_6813762 0.31 AT5G20190.1
AT5G20190
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_+_15233042 0.31 AT4G31390.3
AT4G31390.1
AT4G31390.2
ACDO1
Protein kinase superfamily protein
Chr1_+_1073274 0.31 AT1G04130.1
TPR2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_+_17989067 0.31 AT4G38440.1
IYO
RPAP1-like, carboxy-terminal protein
Chr3_-_3647542 0.30 AT3G11570.1
TBL8
TRICHOME BIREFRINGENCE-LIKE 8
Chr4_+_13025834 0.30 AT4G25500.8
RS40
arginine/serine-rich splicing factor 35
Chr3_+_733253 0.30 AT3G03180.1
AT3G03180.2
AT3G03180.3
AT3G03180
Got1/Sft2-like vescicle transport protein family
Chr2_-_17613591 0.30 AT2G42280.2
AT2G42280.3
AT2G42280.1
FBH4
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_6172245 0.30 AT1G17940.6
AT1G17940
Endosomal targeting BRO1-like domain-containing protein
Chr1_+_7835781 0.30 AT1G22190.1
AT1G22190
Integrase-type DNA-binding superfamily protein
Chr1_-_300757 0.30 AT1G01830.1
AT1G01830
ARM repeat superfamily protein
Chr5_+_2661642 0.29 AT5G08270.1
AT5G08270
C5orf35
Chr1_-_300921 0.29 AT1G01830.3
AT1G01830
ARM repeat superfamily protein
Chr5_-_15638509 0.29 AT5G39060.1
AT5G39060

Chr1_+_28932119 0.29 AT1G76990.1
AT1G76990.4
ACR3
ACT domain repeat 3
Chr1_+_28932359 0.29 AT1G76990.5
ACR3
ACT domain repeat 3
Chr1_+_2199997 0.28 AT1G07170.1
AT1G07170.3
AT1G07170.5
AT1G07170.2
AT1G07170.6
AT1G07170.4
AT1G07170
PHF5-like protein
Chr1_+_7337819 0.28 AT1G21000.2
AT1G21000
PLATZ transcription factor family protein
Chr3_+_8997370 0.28 AT3G24650.1
ABI3
AP2/B3-like transcriptional factor family protein
Chr2_+_17800312 0.28 AT2G42780.1
AT2G42780.2
AT2G42780
transcription elongation factor B polypeptide
Chr1_+_7337605 0.28 AT1G21000.1
AT1G21000
PLATZ transcription factor family protein
Chr3_-_4739136 0.28 AT3G14230.1
AT3G14230.3
RAP2.2
related to AP2 2
Chr3_-_4739298 0.28 AT3G14230.2
RAP2.2
related to AP2 2
Chr1_+_5148982 0.28 AT1G14920.1
GAI
GRAS family transcription factor family protein
Chr1_+_27498929 0.27 AT1G73130.2
AT1G73130.3
AT1G73130.1
AT1G73130.4
AT1G73130
mucin
Chr1_-_27645525 0.27 AT1G73530.1
AT1G73530
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_+_30305022 0.27 AT1G80620.1
AT1G80620
S15/NS1, RNA-binding protein
Chr3_-_22732152 0.27 AT3G61420.1
AT3G61420
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
Chr3_-_9712659 0.27 AT3G26510.3
AT3G26510.7
AT3G26510.2
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr1_+_24957362 0.27 AT1G66890.1
AT1G66890
50S ribosomal-like protein
Chr1_-_10516347 0.26 AT1G30020.1
AT1G30020
hypothetical protein (Protein of unknown function, DUF538)
Chr4_-_17618656 0.26 AT4G37470.1
KAI2
alpha/beta-Hydrolases superfamily protein
Chr2_-_18907477 0.26 AT2G45950.4
AT2G45950.5
SK20
SKP1-like 20
Chr1_-_25203126 0.26 AT1G67310.1
AT1G67310
Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain
Chr5_-_26150342 0.26 AT5G65430.2
AT5G65430.3
AT5G65430.1
GRF8
general regulatory factor 8
Chr4_+_13024498 0.26 AT4G25500.5
AT4G25500.2
AT4G25500.3
AT4G25500.1
AT4G25500.6
AT4G25500.4
RS40
arginine/serine-rich splicing factor 35
Chr5_-_4722048 0.26 AT5G14640.2
SK13
shaggy-like kinase 13
Chr1_-_302310 0.26 AT1G01830.2
AT1G01830
ARM repeat superfamily protein
Chr2_-_18519731 0.26 AT2G44910.1
HB4
homeobox-leucine zipper protein 4
Chr5_-_4722371 0.26 AT5G14640.1
SK13
shaggy-like kinase 13
Chr3_-_22731954 0.26 AT3G61420.2
AT3G61420
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
Chr3_-_5119060 0.26 AT3G15200.1
AT3G15200
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_2682533 0.26 AT5G08335.2
ATSTE14B
Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Chr2_+_100484 0.26 AT2G01150.2
AT2G01150.3
AT2G01150.1
RHA2B
RING-H2 finger protein 2B
Chr3_+_6120029 0.26 AT3G17860.3
AT3G17860.2
JAZ3
jasmonate-zim-domain protein 3
Chr5_+_2167468 0.26 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
AT5G06980
hypothetical protein
Chr4_-_17615946 0.25 AT4G37460.1
AT4G37460.2
SRFR1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_3396199 0.25 AT5G10745.1
AT5G10745
transmembrane protein
Chr5_+_23701392 0.25 AT5G58660.1
AT5G58660.2
AT5G58660
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_2616287 0.25 AT5G08139.2
AT5G08139
RING/U-box superfamily protein
Chr3_-_3923155 0.25 AT3G12300.1
BUG22
cilia/flagella-associated protein
Chr5_+_2167120 0.25 AT5G06980.1
AT5G06980
hypothetical protein
Chr5_+_26131283 0.25 AT5G65400.2
AT5G65400.1
AT5G65400
alpha/beta-Hydrolases superfamily protein
Chr4_+_17619127 0.24 AT4G37480.1
AT4G37480
Chaperone DnaJ-domain superfamily protein
Chr1_-_27496480 0.24 AT1G73110.2
AT1G73110
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_30188364 0.24 AT1G80290.2
AT1G80290
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_-_5433851 0.24 AT3G16000.1
MFP1
MAR binding filament-like protein 1
Chr2_+_8169546 0.24 AT2G18876.2
AT2G18876.1
AT2G18876
Afadin/alpha-actinin-binding protein
Chr5_+_2616134 0.24 AT5G08139.1
AT5G08139
RING/U-box superfamily protein
Chr3_+_6119707 0.24 AT3G17860.4
AT3G17860.1
JAZ3
jasmonate-zim-domain protein 3
Chr1_+_29599349 0.24 AT1G78700.1
BEH4
BES1/BZR1 homolog 4
Chr2_+_17640546 0.24 AT2G42360.1
AT2G42360
RING/U-box superfamily protein
Chr3_-_9712826 0.24 AT3G26510.5
AT3G26510.4
AT3G26510.1
AT3G26510.6
AT3G26510
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_15207582 0.23 AT2G36270.1
AT2G36270.3
ABI5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr3_-_17191167 0.23 AT3G46660.1
UGT76E12
UDP-glucosyl transferase 76E12
Chr1_+_2712883 0.23 AT1G08570.3
AT1G08570.2
AT1G08570.4
ACHT4
atypical CYS HIS rich thioredoxin 4
Chr4_-_484524 0.23 AT4G01120.1
GBF2
G-box binding factor 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G20180

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 4.7 GO:0070982 cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.7 2.1 GO:0010203 response to very low fluence red light stimulus(GO:0010203)
0.3 1.0 GO:0035606 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
0.2 1.7 GO:0009061 anaerobic respiration(GO:0009061)
0.1 0.6 GO:0006481 C-terminal protein methylation(GO:0006481)
0.1 0.7 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 0.4 GO:0033530 raffinose metabolic process(GO:0033530)
0.1 0.4 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 1.5 GO:0010044 response to aluminum ion(GO:0010044)
0.1 0.4 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.1 1.0 GO:0080183 response to photooxidative stress(GO:0080183)
0.1 0.5 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 0.4 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.1 0.1 GO:0010617 circadian regulation of calcium ion oscillation(GO:0010617)
0.1 0.5 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 0.2 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.1 0.3 GO:0019310 inositol catabolic process(GO:0019310)
0.1 0.3 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.1 1.2 GO:0009641 shade avoidance(GO:0009641)
0.1 0.9 GO:0009750 response to fructose(GO:0009750)
0.1 0.6 GO:0009942 longitudinal axis specification(GO:0009942)
0.1 0.2 GO:0098532 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.1 0.3 GO:0006808 regulation of nitrogen utilization(GO:0006808) gibberellic acid homeostasis(GO:0010336)
0.1 0.2 GO:0015669 gas transport(GO:0015669)
0.1 0.4 GO:0048578 positive regulation of long-day photoperiodism, flowering(GO:0048578)
0.1 0.8 GO:0031053 primary miRNA processing(GO:0031053)
0.1 0.7 GO:0006949 syncytium formation(GO:0006949)
0.0 0.1 GO:0019695 choline metabolic process(GO:0019695)
0.0 0.1 GO:1903890 positive regulation of trichoblast fate specification(GO:0010063) positive regulation of cell fate specification(GO:0042660) positive regulation of plant epidermal cell differentiation(GO:1903890)
0.0 0.5 GO:0006360 transcription from RNA polymerase I promoter(GO:0006360)
0.0 0.3 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.0 0.5 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.1 GO:0072502 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.0 0.4 GO:2000037 regulation of stomatal complex patterning(GO:2000037)
0.0 0.2 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.0 0.3 GO:0030149 sphingolipid catabolic process(GO:0030149)
0.0 2.4 GO:0042542 response to hydrogen peroxide(GO:0042542)
0.0 0.1 GO:0010480 microsporocyte differentiation(GO:0010480)
0.0 0.8 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 0.3 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.2 GO:0001682 tRNA 5'-leader removal(GO:0001682)
0.0 0.4 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.2 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.4 GO:1902074 response to salt(GO:1902074)
0.0 0.2 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.0 0.5 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.8 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.5 GO:0030522 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.0 0.8 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.2 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.0 0.1 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.0 0.2 GO:0045740 positive regulation of DNA replication(GO:0045740)
0.0 0.1 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.0 0.3 GO:0097031 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.0 4.3 GO:0001666 response to hypoxia(GO:0001666)
0.0 0.3 GO:0009704 de-etiolation(GO:0009704)
0.0 0.1 GO:0051098 regulation of binding(GO:0051098)
0.0 0.2 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.1 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.0 1.1 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.1 GO:0044375 regulation of peroxisome size(GO:0044375)
0.0 0.2 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 0.4 GO:0051453 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 0.1 GO:0006266 DNA ligation(GO:0006266)
0.0 0.1 GO:0007143 female meiotic division(GO:0007143)
0.0 0.2 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 2.3 GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130) clathrin coat of coated pit(GO:0030132)
0.1 0.8 GO:0010445 nuclear dicing body(GO:0010445)
0.1 0.5 GO:0000439 core TFIIH complex(GO:0000439)
0.0 0.8 GO:0008023 transcription elongation factor complex(GO:0008023)
0.0 0.1 GO:0034657 GID complex(GO:0034657)
0.0 0.4 GO:0005801 cis-Golgi network(GO:0005801)
0.0 2.5 GO:0016604 nuclear body(GO:0016604)
0.0 0.5 GO:0005669 transcription factor TFIID complex(GO:0005669)
0.0 0.2 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.4 GO:0031970 organelle envelope lumen(GO:0031970)
0.0 0.3 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 1.6 GO:0005635 nuclear envelope(GO:0005635)
0.0 0.3 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 0.5 GO:0005797 Golgi medial cisterna(GO:0005797)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 4.7 GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066)
0.6 2.2 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.3 1.0 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
0.1 0.6 GO:0003880 protein C-terminal carboxyl O-methyltransferase activity(GO:0003880) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity(GO:0004671)
0.1 0.7 GO:0008184 glycogen phosphorylase activity(GO:0008184)
0.1 0.4 GO:0052692 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 0.4 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 0.7 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 0.8 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.1 0.2 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.1 0.4 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.1 0.4 GO:0003994 aconitate hydratase activity(GO:0003994)
0.1 0.3 GO:0050113 inositol oxygenase activity(GO:0050113)
0.1 0.4 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.1 0.9 GO:0051879 Hsp90 protein binding(GO:0051879)
0.1 0.3 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.1 0.2 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.0 0.6 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 0.1 GO:0010331 gibberellin binding(GO:0010331)
0.0 1.7 GO:0016597 amino acid binding(GO:0016597)
0.0 0.4 GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.3 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.0 1.1 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.2 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.2 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.2 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.0 0.1 GO:0070401 NADP+ binding(GO:0070401)
0.0 0.4 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.3 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.1 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.2 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.0 0.5 GO:0016843 amine-lyase activity(GO:0016843)
0.0 0.4 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.0 0.2 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.4 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.0 2.1 GO:0003712 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.0 0.4 GO:0030276 clathrin binding(GO:0030276)
0.0 0.7 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.1 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 0.1 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
0.0 0.4 GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671)
0.0 0.6 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.1 GO:0016161 beta-amylase activity(GO:0016161)
0.0 2.8 GO:0005516 calmodulin binding(GO:0005516)
0.0 0.3 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.1 GO:0016753 sinapoyltransferase activity(GO:0016752) O-sinapoyltransferase activity(GO:0016753)
0.0 0.2 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.1 0.6 PID MTOR 4PATHWAY mTOR signaling pathway
0.0 0.2 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.0 0.1 PID HDAC CLASSII PATHWAY Signaling events mediated by HDAC Class II

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.0 0.1 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism