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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G20110
Z-value: 0.97
Transcription factors associated with AT2G20110
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G20110
|
AT2G20110 | Tesmin/TSO1-like CXC domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G20110 | arTal_v1_Chr2_+_8683979_8684117 | -0.20 | 5.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_25176230_25176230 Show fit | 0.86 |
AT1G67265.1
|
ROTUNDIFOLIA like 21 |
|
| arTal_v1_Chr5_-_19693845_19693845 Show fit | 0.83 |
AT5G48570.1
|
FKBP-type peptidyl-prolyl cis-trans isomerase family protein |
|
| arTal_v1_Chr3_-_15953346_15953346 Show fit | 0.66 |
AT3G44260.1
|
Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
|
| arTal_v1_Chr5_+_5718498_5718498 Show fit | 0.65 |
AT5G17350.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 0.60 |
AT1G27730.1
|
salt tolerance zinc finger |
|
| arTal_v1_Chr1_+_22628264_22628409 Show fit | 0.60 |
AT1G61340.1
AT1G61340.2 |
F-box family protein |
|
| arTal_v1_Chr5_-_17005510_17005510 Show fit | 0.60 |
AT5G42530.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_9475679_9475682 Show fit | 0.55 |
AT5G26920.1
AT5G26920.2 AT5G26920.3 |
Cam-binding protein 60-like G |
|
| arTal_v1_Chr5_+_5237970_5238178 Show fit | 0.53 |
AT5G16030.1
AT5G16030.4 AT5G16030.2 AT5G16030.3 |
mental retardation GTPase activating protein |
|
| arTal_v1_Chr3_+_17949416_17949416 Show fit | 0.53 |
AT3G48460.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G20110
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | GO:0060688 | regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032) |
| 0.1 | 0.8 | GO:0031930 | mitochondria-nucleus signaling pathway(GO:0031930) |
| 0.0 | 0.8 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.0 | 0.8 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.2 | 0.7 | GO:0035264 | multicellular organism growth(GO:0035264) |
| 0.1 | 0.7 | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289) |
| 0.0 | 0.7 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
| 0.1 | 0.6 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.1 | 0.6 | GO:1990019 | protein storage vacuole organization(GO:1990019) |
| 0.1 | 0.6 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.1 | 0.8 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.2 | 0.7 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.1 | 0.6 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 0.6 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 0.5 | GO:0090397 | stigma papilla(GO:0090397) |
| 0.0 | 0.4 | GO:0000815 | ESCRT III complex(GO:0000815) |
| 0.0 | 0.4 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.0 | 0.4 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.4 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 2.2 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.0 | 1.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 0.9 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
| 0.0 | 0.7 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 0.7 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.1 | 0.6 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.1 | 0.6 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
| 0.1 | 0.6 | GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830) |
| 0.1 | 0.6 | GO:0008379 | thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.2 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.1 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |