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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G18550
Z-value: 0.79
Transcription factors associated with AT2G18550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18550
|
AT2G18550 | homeobox protein 21 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB21 | arTal_v1_Chr2_-_8051316_8051316 | 0.14 | 6.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 0.95 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 0.90 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr1_+_5872024_5872024 Show fit | 0.86 |
AT1G17180.1
|
glutathione S-transferase TAU 25 |
|
| arTal_v1_Chr5_+_23337832_23337832 Show fit | 0.86 |
AT5G57625.1
|
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
|
| arTal_v1_Chr4_-_13317640_13317640 Show fit | 0.83 |
AT4G26320.1
|
arabinogalactan protein 13 |
|
| arTal_v1_Chr5_+_1461786_1461786 Show fit | 0.79 |
AT5G04960.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr4_+_13200593_13200593 Show fit | 0.74 |
AT4G26010.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_24703041_24703166 Show fit | 0.74 |
AT1G66270.2
AT1G66270.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 0.74 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr1_+_23331563_23331563 Show fit | 0.73 |
AT1G62980.1
|
expansin A18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.0 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 1.9 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.2 | 1.8 | GO:0009804 | coumarin metabolic process(GO:0009804) |
| 0.2 | 1.7 | GO:0080028 | nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028) |
| 0.0 | 1.5 | GO:0006749 | glutathione metabolic process(GO:0006749) |
| 0.1 | 1.2 | GO:0035336 | long-chain fatty-acyl-CoA metabolic process(GO:0035336) |
| 0.0 | 1.2 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.0 | 1.2 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.0 | 1.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 0.9 | GO:0010106 | cellular response to iron ion starvation(GO:0010106) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 2.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.7 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 1.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.8 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.1 | 0.7 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.2 | 0.5 | GO:0016323 | basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178) |
| 0.0 | 0.4 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
| 0.0 | 0.4 | GO:0030686 | 90S preribosome(GO:0030686) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.0 | 1.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 1.5 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 1.4 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.0 | 1.4 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.2 | 1.2 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
| 0.1 | 1.2 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
| 0.0 | 1.2 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
| 0.0 | 1.1 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 1.0 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.2 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.1 | 0.1 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.0 | 0.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.0 | 0.1 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.4 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 0.3 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.2 | REACTOME MITOTIC G2 G2 M PHASES | Genes involved in Mitotic G2-G2/M phases |
| 0.1 | 0.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.0 | 0.1 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.0 | 0.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.1 | REACTOME G1 PHASE | Genes involved in G1 Phase |
| 0.0 | 0.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.0 | 0.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |