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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G18350
Z-value: 2.19
Transcription factors associated with AT2G18350
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18350
|
AT2G18350 | homeobox protein 24 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB24 | arTal_v1_Chr2_-_7972396_7972396 | -0.21 | 4.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 3.24 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr1_+_18546086_18546165 Show fit | 3.15 |
AT1G50050.2
AT1G50050.1 |
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
|
| arTal_v1_Chr3_+_10565674_10565674 Show fit | 2.78 |
AT3G28300.1
|
transmembrane protein, putative (DUF677) |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 2.70 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 2.53 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_6725966_6725966 Show fit | 2.33 |
AT5G19890.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_4651549_4651549 Show fit | 2.27 |
AT1G13600.1
|
basic leucine-zipper 58 |
|
| arTal_v1_Chr5_-_22115539_22115539 Show fit | 2.21 |
AT5G54470.1
|
B-box type zinc finger family protein |
|
| arTal_v1_Chr3_-_18718396_18718396 Show fit | 2.16 |
AT3G50440.1
|
methylesterase |
|
| arTal_v1_Chr3_-_2569700_2569700 Show fit | 2.10 |
AT3G08040.2
AT3G08040.1 |
MATE efflux family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18350
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.4 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.0 | 4.3 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.2 | 4.0 | GO:0006538 | glutamate catabolic process(GO:0006538) |
| 0.2 | 4.0 | GO:0007602 | phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585) |
| 0.1 | 3.8 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.1 | 3.7 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 3.3 | GO:0008360 | regulation of cell shape(GO:0008360) |
| 0.1 | 3.3 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.6 | 3.2 | GO:0031000 | response to caffeine(GO:0031000) response to alkaloid(GO:0043279) |
| 0.5 | 3.1 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.3 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 7.5 | GO:0042651 | thylakoid membrane(GO:0042651) |
| 0.1 | 3.1 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.0 | 3.1 | GO:0005768 | endosome(GO:0005768) |
| 0.9 | 2.8 | GO:0043235 | receptor complex(GO:0043235) |
| 0.1 | 2.8 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
| 0.8 | 2.4 | GO:0043673 | lateral plasma membrane(GO:0016328) pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.2 | 2.2 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.0 | 2.2 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 2.1 | GO:0009574 | preprophase band(GO:0009574) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 6.5 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 5.1 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 4.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 4.3 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 4.3 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.4 | 4.0 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
| 0.0 | 4.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 3.4 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 3.4 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 0.9 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.2 | 0.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.2 | 0.2 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
| 0.1 | 0.2 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.2 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 4.0 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.4 | 1.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.3 | 0.8 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.1 | 0.7 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.2 | 0.6 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.6 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
| 0.1 | 0.5 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
| 0.2 | 0.4 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 0.4 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.4 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |