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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G18160
Z-value: 1.27
Transcription factors associated with AT2G18160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18160
|
AT2G18160 | basic leucine-zipper 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP2 | arTal_v1_Chr2_-_7899242_7899242 | 0.43 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 3.46 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.75 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.49 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
|
| arTal_v1_Chr3_-_3091766_3091766 Show fit | 1.40 |
AT3G10020.2
|
plant/protein |
|
| arTal_v1_Chr1_+_30241452_30241452 Show fit | 1.36 |
AT1G80440.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr3_-_3091922_3091922 Show fit | 1.25 |
AT3G10020.1
|
plant/protein |
|
| arTal_v1_Chr3_+_22804998_22804998 Show fit | 1.19 |
AT3G61630.1
|
cytokinin response factor 6 |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 1.18 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_18581696_18581696 Show fit | 1.16 |
AT4G40090.1
|
arabinogalactan protein 3 |
|
| arTal_v1_Chr4_+_7304323_7304323 Show fit | 1.16 |
AT4G12290.2
|
Copper amine oxidase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.7 | GO:0009061 | anaerobic respiration(GO:0009061) |
| 0.3 | 2.3 | GO:0010304 | PSII associated light-harvesting complex II catabolic process(GO:0010304) |
| 0.0 | 2.2 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.0 | 2.1 | GO:0009640 | photomorphogenesis(GO:0009640) |
| 0.1 | 2.0 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) |
| 0.0 | 2.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 1.9 | GO:0009624 | response to nematode(GO:0009624) |
| 0.4 | 1.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.2 | 1.7 | GO:0046482 | para-aminobenzoic acid metabolic process(GO:0046482) |
| 0.2 | 1.7 | GO:0016584 | nucleosome positioning(GO:0016584) negative regulation of chromatin silencing(GO:0031936) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 2.7 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 1.7 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 1.2 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 1.2 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.0 | 1.0 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 0.8 | GO:0035097 | histone methyltransferase complex(GO:0035097) |
| 0.0 | 0.8 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.7 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 0.6 | GO:0005776 | autophagosome(GO:0005776) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.8 | GO:0016597 | amino acid binding(GO:0016597) |
| 0.3 | 2.4 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.3 | 2.1 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.0 | 2.0 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 1.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.4 | 1.7 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
| 0.4 | 1.7 | GO:0047215 | indole-3-acetate beta-glucosyltransferase activity(GO:0047215) UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002) |
| 0.3 | 1.7 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
| 0.1 | 1.7 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.1 | 1.5 | GO:0047631 | ADP-ribose diphosphatase activity(GO:0047631) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | PID ATR PATHWAY | ATR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.6 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.3 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.3 | REACTOME DNA REPAIR | Genes involved in DNA Repair |
| 0.0 | 0.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.1 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.0 | 0.1 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |