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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G18060
Z-value: 0.75
Transcription factors associated with AT2G18060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18060
|
AT2G18060 | vascular related NAC-domain protein 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| VND1 | arTal_v1_Chr2_-_7850303_7850303 | -0.31 | 2.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_13016235_13016235 Show fit | 1.40 |
AT4G25470.1
|
C-repeat/DRE binding factor 2 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.11 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 1.07 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 1.06 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 0.98 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 0.93 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr4_+_14954204_14954204 Show fit | 0.93 |
AT4G30650.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr1_+_5872024_5872024 Show fit | 0.89 |
AT1G17180.1
|
glutathione S-transferase TAU 25 |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 0.88 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr1_+_23168767_23168767 Show fit | 0.80 |
AT1G62570.1
|
flavin-monooxygenase glucosinolate S-oxygenase 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.4 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 2.1 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.4 | 2.0 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 1.9 | GO:0006826 | iron ion transport(GO:0006826) |
| 0.0 | 1.9 | GO:0042752 | regulation of circadian rhythm(GO:0042752) |
| 0.1 | 1.8 | GO:0072506 | phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506) |
| 0.1 | 1.7 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.1 | 1.6 | GO:0010555 | response to mannitol(GO:0010555) |
| 0.0 | 1.6 | GO:0006749 | glutathione metabolic process(GO:0006749) |
| 0.1 | 1.2 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 1.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 1.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.0 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.0 | GO:0031226 | intrinsic component of plasma membrane(GO:0031226) |
| 0.0 | 0.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.6 | GO:0005770 | late endosome(GO:0005770) |
| 0.0 | 0.5 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 0.5 | GO:0000118 | histone deacetylase complex(GO:0000118) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.2 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 1.9 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.1 | 1.8 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 1.8 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 1.8 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 1.7 | GO:0015297 | antiporter activity(GO:0015297) |
| 0.1 | 1.6 | GO:0022839 | calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839) |
| 0.2 | 1.4 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 1.2 | GO:0004427 | inorganic diphosphatase activity(GO:0004427) |
| 0.1 | 1.2 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | PID EPHA FWDPATHWAY | EPHA forward signaling |
| 0.0 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.2 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.0 | 0.1 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.0 | 0.1 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
| 0.0 | 0.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.5 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.0 | 0.4 | REACTOME HEMOSTASIS | Genes involved in Hemostasis |
| 0.1 | 0.3 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
| 0.1 | 0.3 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.1 | 0.2 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.2 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.0 | 0.2 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |