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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G15740
Z-value: 0.92
Transcription factors associated with AT2G15740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G15740
|
AT2G15740 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G15740 | arTal_v1_Chr2_-_6857735_6857735 | -0.17 | 5.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_11134075_11134075 Show fit | 0.60 |
AT4G20780.1
|
calmodulin like 42 |
|
| arTal_v1_Chr1_-_20706893_20706893 Show fit | 0.60 |
AT1G55450.2
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr1_-_20707071_20707071 Show fit | 0.60 |
AT1G55450.1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr1_+_6389399_6389399 Show fit | 0.57 |
AT1G18570.1
|
myb domain protein 51 |
|
| arTal_v1_Chr5_-_213472_213472 Show fit | 0.57 |
AT5G01540.1
|
lectin receptor kinase a4.1 |
|
| arTal_v1_Chr5_-_8154710_8154710 Show fit | 0.52 |
AT5G24110.1
|
WRKY DNA-binding protein 30 |
|
| arTal_v1_Chr4_+_9051871_9051871 Show fit | 0.51 |
AT4G15975.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr4_+_1032350_1032350 Show fit | 0.50 |
AT4G02330.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_9050660_9050660 Show fit | 0.49 |
AT5G25930.1
|
kinase family with leucine-rich repeat domain-containing protein |
|
| arTal_v1_Chr5_-_22232949_22232949 Show fit | 0.49 |
AT5G54720.1
|
Ankyrin repeat family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G15740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.2 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.0 | 0.9 | GO:0071218 | cellular response to misfolded protein(GO:0071218) |
| 0.0 | 0.8 | GO:0043069 | negative regulation of programmed cell death(GO:0043069) |
| 0.1 | 0.7 | GO:0080142 | regulation of salicylic acid biosynthetic process(GO:0080142) |
| 0.0 | 0.7 | GO:0010193 | response to ozone(GO:0010193) |
| 0.1 | 0.6 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.0 | 0.6 | GO:0009306 | protein secretion(GO:0009306) |
| 0.0 | 0.6 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.0 | 0.6 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.0 | 0.6 | GO:0010091 | trichome branching(GO:0010091) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
| 0.0 | 0.6 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.0 | 0.5 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 0.4 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.0 | 0.4 | GO:0005956 | protein kinase CK2 complex(GO:0005956) |
| 0.0 | 0.4 | GO:0000815 | ESCRT III complex(GO:0000815) |
| 0.1 | 0.3 | GO:0005967 | mitochondrial pyruvate dehydrogenase complex(GO:0005967) |
| 0.1 | 0.3 | GO:0000812 | Swr1 complex(GO:0000812) |
| 0.0 | 0.3 | GO:0009368 | endopeptidase Clp complex(GO:0009368) |
| 0.0 | 0.3 | GO:1903561 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0070300 | phosphatidic acid binding(GO:0070300) |
| 0.0 | 0.7 | GO:0003756 | protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864) |
| 0.1 | 0.6 | GO:0030544 | Hsp70 protein binding(GO:0030544) |
| 0.1 | 0.5 | GO:0000285 | 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285) |
| 0.0 | 0.5 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.0 | 0.5 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
| 0.0 | 0.5 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
| 0.0 | 0.5 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.1 | 0.4 | GO:0047364 | desulfoglucosinolate sulfotransferase activity(GO:0047364) |
| 0.1 | 0.4 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.1 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
| 0.0 | 0.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.1 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.0 | 0.1 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.0 | 0.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.1 | REACTOME LIPOPROTEIN METABOLISM | Genes involved in Lipoprotein metabolism |
| 0.0 | 0.1 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.1 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
| 0.0 | 0.0 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |