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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G06200
Z-value: 6.10
Transcription factors associated with AT2G06200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G06200
|
AT2G06200 | growth-regulating factor 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GRF6 | arTal_v1_Chr2_+_2426176_2426239 | 0.15 | 6.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 15.15 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr5_+_5209717_5209717 Show fit | 12.26 |
AT5G15960.1
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) |
|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 10.17 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 9.35 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 7.55 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 7.51 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 7.31 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 6.73 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr5_-_5177897_5177897 Show fit | 6.07 |
AT5G15850.1
|
CONSTANS-like 1 |
|
| arTal_v1_Chr1_-_1248826_1248876 Show fit | 6.00 |
AT1G04570.2
AT1G04570.1 |
Major facilitator superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G06200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.7 | 22.2 | GO:0009413 | response to flooding(GO:0009413) |
| 0.4 | 15.7 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 1.7 | 15.1 | GO:0009819 | drought recovery(GO:0009819) |
| 2.9 | 14.6 | GO:0010201 | response to continuous far red light stimulus by the high-irradiance response system(GO:0010201) |
| 1.3 | 13.9 | GO:0009608 | response to symbiont(GO:0009608) |
| 0.3 | 12.7 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
| 0.3 | 12.4 | GO:0051170 | nuclear import(GO:0051170) |
| 0.6 | 12.3 | GO:0007602 | phototransduction(GO:0007602) detection of light stimulus(GO:0009583) red, far-red light phototransduction(GO:0009585) |
| 0.8 | 12.0 | GO:0009870 | defense response signaling pathway, resistance gene-dependent(GO:0009870) |
| 0.1 | 11.9 | GO:0015979 | photosynthesis(GO:0015979) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 159.1 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 97.4 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.2 | 95.5 | GO:0009526 | plastid envelope(GO:0009526) |
| 0.1 | 77.9 | GO:0044435 | plastid part(GO:0044435) |
| 0.0 | 65.4 | GO:0009507 | chloroplast(GO:0009507) |
| 0.0 | 51.9 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.3 | 27.9 | GO:0016604 | nuclear body(GO:0016604) |
| 0.2 | 25.1 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.2 | 24.8 | GO:0000785 | chromatin(GO:0000785) |
| 0.1 | 17.5 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 63.8 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.1 | 47.7 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 41.8 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.2 | 28.9 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.3 | 27.9 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 22.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 21.5 | GO:0043531 | ADP binding(GO:0043531) |
| 1.4 | 21.1 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.2 | 18.2 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.0 | 16.4 | GO:0003676 | nucleic acid binding(GO:0003676) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 7.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.7 | 5.8 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.6 | 4.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 1.0 | 4.0 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.6 | 3.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 1.3 | 3.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.7 | 3.3 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.5 | 2.7 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.7 | 2.1 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.5 | 2.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 8.2 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 1.5 | 5.8 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.9 | 4.6 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 1.3 | 3.8 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 1.1 | 3.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 1.0 | 2.9 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.9 | 2.6 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.4 | 2.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 2.5 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.5 | 1.9 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |