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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G04038
Z-value: 1.00
Transcription factors associated with AT2G04038
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G04038
|
AT2G04038 | basic leucine-zipper 48 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP48 | arTal_v1_Chr2_+_1331919_1331919 | -0.18 | 5.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.18 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 1.89 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 1.87 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr1_+_739544_739678 Show fit | 1.27 |
AT1G03090.2
AT1G03090.1 |
methylcrotonyl-CoA carboxylase alpha chain |
|
| arTal_v1_Chr2_-_7768040_7768040 Show fit | 1.26 |
AT2G17880.1
|
Chaperone DnaJ-domain superfamily protein |
|
| arTal_v1_Chr1_+_30241452_30241452 Show fit | 1.20 |
AT1G80440.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 1.12 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 1.08 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr5_-_5358789_5358789 Show fit | 1.08 |
AT5G16370.1
|
acyl activating enzyme 5 |
|
| arTal_v1_Chr1_+_28746833_28746833 Show fit | 1.05 |
AT1G76600.1
|
poly polymerase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G04038
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.9 | 3.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.0 | 3.1 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 1.7 | GO:0006552 | leucine catabolic process(GO:0006552) |
| 0.2 | 1.6 | GO:0009061 | anaerobic respiration(GO:0009061) |
| 0.1 | 1.6 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
| 0.0 | 1.6 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 1.5 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
| 0.2 | 1.3 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.0 | 1.3 | GO:0010431 | seed maturation(GO:0010431) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
| 0.1 | 0.4 | GO:0005776 | autophagosome(GO:0005776) |
| 0.1 | 0.3 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.0 | 0.3 | GO:0000153 | cytoplasmic ubiquitin ligase complex(GO:0000153) |
| 0.0 | 0.3 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
| 0.1 | 0.2 | GO:0009501 | amyloplast(GO:0009501) |
| 0.0 | 0.2 | GO:0010369 | chromocenter(GO:0010369) |
| 0.0 | 0.2 | GO:0000124 | SAGA complex(GO:0000124) |
| 0.0 | 0.2 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
| 0.0 | 0.1 | GO:1990429 | Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.7 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.3 | 2.2 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 1.7 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 1.6 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.1 | 1.6 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 1.4 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 1.3 | GO:0016885 | CoA carboxylase activity(GO:0016421) ligase activity, forming carbon-carbon bonds(GO:0016885) |
| 0.0 | 1.2 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.1 | 1.0 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 0.9 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.1 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.0 | 0.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |