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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G03500
Z-value: 0.96
Transcription factors associated with AT2G03500
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G03500
|
AT2G03500 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G03500 | arTal_v1_Chr2_+_1059545_1059545 | -0.54 | 4.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_17441242_17441242 Show fit | 1.18 |
AT3G47340.3
AT3G47340.2 |
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr3_-_17441431_17441431 Show fit | 1.14 |
AT3G47340.1
|
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr3_-_17440176_17440176 Show fit | 1.12 |
AT3G47340.4
|
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 1.08 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 0.87 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 0.87 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr4_+_12137995_12138137 Show fit | 0.85 |
AT4G23180.1
AT4G23180.3 AT4G23180.2 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 10 |
|
| arTal_v1_Chr2_+_17137829_17137846 Show fit | 0.82 |
AT2G41100.4
AT2G41100.7 |
Calcium-binding EF hand family protein |
|
| arTal_v1_Chr2_+_17137427_17137431 Show fit | 0.80 |
AT2G41100.5
AT2G41100.6 |
Calcium-binding EF hand family protein |
|
| arTal_v1_Chr1_-_19052582_19052582 Show fit | 0.77 |
AT1G51400.1
|
Photosystem II 5 kD protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G03500
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.3 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 4.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 3.8 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.6 | 3.4 | GO:0043617 | cellular response to sucrose starvation(GO:0043617) |
| 0.1 | 3.3 | GO:0010193 | response to ozone(GO:0010193) |
| 0.5 | 2.1 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.0 | 1.7 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
| 0.3 | 1.6 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.3 | 1.5 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.1 | 1.4 | GO:0009704 | de-etiolation(GO:0009704) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.3 | 1.3 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.1 | 0.9 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 0.9 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 0.9 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.1 | 0.8 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.8 | GO:0005684 | U2-type spliceosomal complex(GO:0005684) |
| 0.0 | 0.7 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 0.6 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
| 0.0 | 0.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.7 | GO:0001012 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.5 | 3.3 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.2 | 2.3 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.0 | 2.1 | GO:0043531 | ADP binding(GO:0043531) |
| 0.4 | 1.8 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.3 | 1.5 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.1 | 1.4 | GO:0015197 | peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198) |
| 0.1 | 1.4 | GO:0008970 | phosphatidylcholine 1-acylhydrolase activity(GO:0008970) |
| 0.1 | 1.3 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 1.3 | GO:0000146 | microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.0 | 0.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.0 | 0.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 0.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.1 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.0 | 0.3 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.1 | 0.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.0 | 0.2 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.1 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |