Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT2G03340
Z-value: 2.46
Transcription factors associated with AT2G03340
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G03340
|
AT2G03340 | WRKY DNA-binding protein 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY3 | arTal_v1_Chr2_-_1017222_1017222 | 0.11 | 7.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_11005638_11005638 Show fit | 4.98 |
AT3G29000.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr1_-_9128568_9128568 Show fit | 4.67 |
AT1G26380.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr4_+_12137995_12138137 Show fit | 4.63 |
AT4G23180.1
AT4G23180.3 AT4G23180.2 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 10 |
|
| arTal_v1_Chr4_-_17571743_17571743 Show fit | 4.44 |
AT4G37370.1
|
cytochrome P450, family 81, subfamily D, polypeptide 8 |
|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 4.32 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 4.28 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_+_30383561_30383561 Show fit | 4.20 |
AT1G80840.1
|
WRKY DNA-binding protein 40 |
|
| arTal_v1_Chr4_-_12143833_12143858 Show fit | 4.18 |
AT4G23190.1
AT4G23190.2 AT4G23190.3 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 11 |
|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 4.16 |
AT1G27730.1
|
salt tolerance zinc finger |
|
| arTal_v1_Chr1_-_10720843_10720843 Show fit | 4.11 |
AT1G30370.1
|
alpha/beta-Hydrolases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G03340
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 27.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.3 | 18.1 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.1 | 15.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 6.3 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
| 0.5 | 5.9 | GO:0042344 | indole glucosinolate catabolic process(GO:0042344) |
| 0.6 | 5.3 | GO:0010023 | proanthocyanidin biosynthetic process(GO:0010023) |
| 0.0 | 4.4 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 1.0 | 4.2 | GO:0035264 | multicellular organism growth(GO:0035264) |
| 0.4 | 4.2 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.5 | 4.1 | GO:0010508 | positive regulation of autophagy(GO:0010508) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 4.4 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 3.0 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.1 | 2.6 | GO:0009504 | cell plate(GO:0009504) |
| 0.3 | 2.2 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 2.1 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.9 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 1.6 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 1.3 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.0 | 1.1 | GO:0000145 | exocyst(GO:0000145) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 30.0 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.1 | 27.5 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 7.4 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.3 | 6.3 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
| 0.3 | 4.8 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
| 0.0 | 4.8 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.4 | 4.1 | GO:0008970 | phosphatidylcholine 1-acylhydrolase activity(GO:0008970) |
| 0.1 | 4.1 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
| 0.1 | 4.1 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 4.1 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 1.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.2 | 2.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.7 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.3 | 1.4 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.4 | 1.2 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |