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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G02820
Z-value: 2.09
Transcription factors associated with AT2G02820
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G02820
|
AT2G02820 | myb domain protein 88 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB88 | arTal_v1_Chr2_-_807756_807895 | 0.54 | 4.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 2.27 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 2.16 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 2.16 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_-_5765798_5765798 Show fit | 1.95 |
AT1G16850.1
|
transmembrane protein |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 1.80 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr3_-_20576249_20576249 Show fit | 1.63 |
AT3G55500.1
|
expansin A16 |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 1.60 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_7089606_7089606 Show fit | 1.56 |
AT1G20450.1
AT1G20450.2 |
Dehydrin family protein |
|
| arTal_v1_Chr3_-_20142763_20142763 Show fit | 1.53 |
AT3G54400.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 1.52 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G02820
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 6.9 | GO:0042026 | protein refolding(GO:0042026) |
| 0.0 | 6.5 | GO:0006457 | protein folding(GO:0006457) |
| 0.0 | 5.5 | GO:0006412 | translation(GO:0006412) |
| 0.8 | 3.8 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 3.8 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 3.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.4 | 3.5 | GO:0046500 | S-adenosylmethionine metabolic process(GO:0046500) |
| 0.1 | 3.4 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.3 | 3.1 | GO:0009819 | drought recovery(GO:0009819) |
| 0.2 | 3.0 | GO:1902074 | response to salt(GO:1902074) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 25.7 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 25.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 14.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 10.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 9.4 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 7.1 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 5.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 5.3 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 4.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 4.0 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 9.0 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 5.1 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.3 | 4.7 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 4.6 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.3 | 4.0 | GO:0015112 | nitrate transmembrane transporter activity(GO:0015112) |
| 0.3 | 3.6 | GO:0002020 | protease binding(GO:0002020) |
| 0.4 | 2.9 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 2.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.0 | 2.8 | GO:0003743 | translation initiation factor activity(GO:0003743) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 1.2 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.8 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 0.6 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.4 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 0.3 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.7 | REACTOME TRANSLATION | Genes involved in Translation |
| 0.1 | 1.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 1.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 1.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 0.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 0.8 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.2 | 0.7 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.2 | 0.7 | REACTOME SIGNALING BY NOTCH1 | Genes involved in Signaling by NOTCH1 |
| 0.2 | 0.6 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.1 | 0.6 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |