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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G01940
Z-value: 0.54
Transcription factors associated with AT2G01940
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G01940
|
AT2G01940 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SGR5 | arTal_v1_Chr2_+_432195_432275 | 0.79 | 7.0e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_7796310_7796460 Show fit | 0.69 |
AT3G22120.1
AT3G22120.2 |
cell wall-plasma membrane linker protein |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 0.52 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr1_+_3093644_3093644 Show fit | 0.52 |
AT1G09560.1
|
germin-like protein 5 |
|
| arTal_v1_Chr4_+_8646150_8646150 Show fit | 0.49 |
AT4G15160.2
AT4G15160.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_10599042_10599042 Show fit | 0.45 |
AT3G28345.1
|
ABC transporter family protein |
|
| arTal_v1_Chr4_-_6479165_6479171 Show fit | 0.43 |
AT4G10480.2
AT4G10480.1 |
Nascent polypeptide-associated complex (NAC), alpha subunit family protein |
|
| arTal_v1_Chr5_-_23301689_23301689 Show fit | 0.43 |
AT5G57530.1
|
xyloglucan endotransglucosylase/hydrolase 12 |
|
| arTal_v1_Chr5_+_3347381_3347437 Show fit | 0.42 |
AT5G10580.3
AT5G10580.4 AT5G10580.1 AT5G10580.2 |
plant/protein (Protein of unknown function, DUF599) |
|
| arTal_v1_Chr5_-_10070899_10070899 Show fit | 0.41 |
AT5G28060.1
|
Ribosomal protein S24e family protein |
|
| arTal_v1_Chr4_-_8794433_8794442 Show fit | 0.41 |
AT4G15390.1
AT4G15390.2 |
HXXXD-type acyl-transferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G01940
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | GO:0035444 | nickel cation transmembrane transport(GO:0035444) cobalt ion homeostasis(GO:0055068) |
| 0.0 | 1.0 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 0.6 | GO:0015770 | sucrose transport(GO:0015770) |
| 0.0 | 0.6 | GO:0018208 | protein peptidyl-prolyl isomerization(GO:0000413) peptidyl-proline modification(GO:0018208) |
| 0.0 | 0.6 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.2 | 0.5 | GO:0006659 | phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659) |
| 0.1 | 0.5 | GO:0009942 | longitudinal axis specification(GO:0009942) |
| 0.0 | 0.5 | GO:0010497 | plasmodesmata-mediated intercellular transport(GO:0010497) |
| 0.0 | 0.5 | GO:0010305 | leaf vascular tissue pattern formation(GO:0010305) |
| 0.0 | 0.5 | GO:0010268 | brassinosteroid homeostasis(GO:0010268) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.5 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 1.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 0.7 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.1 | 0.6 | GO:0005832 | chaperonin-containing T-complex(GO:0005832) |
| 0.0 | 0.6 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.5 | GO:0009574 | preprophase band(GO:0009574) |
| 0.1 | 0.4 | GO:0005854 | nascent polypeptide-associated complex(GO:0005854) |
| 0.0 | 0.4 | GO:0042555 | MCM complex(GO:0042555) |
| 0.0 | 0.4 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
| 0.1 | 0.3 | GO:0005967 | mitochondrial pyruvate dehydrogenase complex(GO:0005967) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.3 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.3 | 1.0 | GO:0015099 | cobalt ion transmembrane transporter activity(GO:0015087) nickel cation transmembrane transporter activity(GO:0015099) |
| 0.0 | 0.9 | GO:0043621 | protein self-association(GO:0043621) |
| 0.0 | 0.8 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 0.7 | GO:0004427 | inorganic diphosphatase activity(GO:0004427) |
| 0.0 | 0.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 0.6 | GO:0008144 | drug binding(GO:0008144) |
| 0.0 | 0.6 | GO:0008515 | sucrose transmembrane transporter activity(GO:0008515) |
| 0.0 | 0.6 | GO:0019199 | transmembrane receptor protein kinase activity(GO:0019199) |
| 0.1 | 0.5 | GO:0004512 | inositol-3-phosphate synthase activity(GO:0004512) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.3 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.3 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.1 | 0.2 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.0 | 0.2 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.0 | 0.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.0 | 0.1 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.0 | 0.1 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.0 | 0.1 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |