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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G01930
Z-value: 2.64
Transcription factors associated with AT2G01930
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G01930
|
AT2G01930 | basic pentacysteine1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BPC1 | arTal_v1_Chr2_-_428900_428900 | 0.65 | 1.2e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 6.51 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr4_+_9865103_9865103 Show fit | 3.50 |
AT4G17730.2
AT4G17730.1 |
syntaxin of plants 23 |
|
| arTal_v1_Chr5_-_7054281_7054281 Show fit | 3.38 |
AT5G20830.3
|
sucrose synthase 1 |
|
| arTal_v1_Chr4_-_407142_407142 Show fit | 3.33 |
AT4G00950.1
|
hypothetical protein (DUF688) |
|
| arTal_v1_Chr5_-_7054713_7054713 Show fit | 3.31 |
AT5G20830.1
|
sucrose synthase 1 |
|
| arTal_v1_Chr5_-_7055398_7055398 Show fit | 3.23 |
AT5G20830.2
|
sucrose synthase 1 |
|
| arTal_v1_Chr5_+_17973775_17973775 Show fit | 3.09 |
AT5G44575.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_11810726_11810726 Show fit | 2.95 |
AT3G30180.1
|
brassinosteroid-6-oxidase 2 |
|
| arTal_v1_Chr5_-_5146458_5146458 Show fit | 2.86 |
AT5G15780.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr5_+_2563366_2563366 Show fit | 2.75 |
AT5G08000.1
AT5G08000.2 |
glucan endo-1,3-beta-glucosidase-like protein 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G01930
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 9.9 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.2 | 9.9 | GO:0042752 | regulation of circadian rhythm(GO:0042752) |
| 0.5 | 8.9 | GO:0010050 | vegetative phase change(GO:0010050) |
| 0.5 | 7.6 | GO:0048497 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
| 0.1 | 5.8 | GO:0045732 | positive regulation of protein catabolic process(GO:0045732) |
| 0.0 | 4.9 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.2 | 4.0 | GO:0009880 | embryonic pattern specification(GO:0009880) |
| 0.0 | 3.8 | GO:0010119 | regulation of stomatal movement(GO:0010119) |
| 0.1 | 3.6 | GO:1900424 | regulation of defense response to bacterium(GO:1900424) |
| 0.1 | 3.5 | GO:1901420 | negative regulation of response to alcohol(GO:1901420) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 16.7 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 6.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.3 | 3.5 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.5 | 2.7 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
| 0.0 | 2.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 2.4 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
| 0.4 | 2.3 | GO:0009360 | DNA polymerase III complex(GO:0009360) |
| 0.0 | 2.3 | GO:0016604 | nuclear body(GO:0016604) |
| 0.4 | 2.2 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 28.1 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.6 | 9.9 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 8.2 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.0 | 8.0 | GO:0008289 | lipid binding(GO:0008289) |
| 0.1 | 7.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 4.3 | GO:0060089 | receptor activity(GO:0004872) molecular transducer activity(GO:0060089) |
| 0.2 | 4.2 | GO:0051219 | protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219) |
| 0.1 | 3.6 | GO:0010857 | calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.1 | 3.5 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
| 0.0 | 3.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.8 | ST GAQ PATHWAY | G alpha q Pathway |
| 0.1 | 1.3 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.3 | 0.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.5 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
| 0.1 | 0.3 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
| 0.1 | 0.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.3 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.0 | 0.2 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 1.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.5 | REACTOME SIGNALING BY SCF KIT | Genes involved in Signaling by SCF-KIT |
| 0.1 | 0.3 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |