Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT1G79580
Z-value: 1.57
Transcription factors associated with AT1G79580
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G79580
|
AT1G79580 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SMB | arTal_v1_Chr1_-_29943442_29943498 | -0.35 | 2.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 3.30 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 3.15 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 3.12 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 3.01 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 2.92 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 2.83 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 2.77 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 2.76 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 2.58 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 2.44 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G79580
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 29.9 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 12.2 | GO:0010410 | hemicellulose metabolic process(GO:0010410) |
| 0.1 | 10.2 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) |
| 0.4 | 7.6 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.4 | 7.2 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.3 | 7.0 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 6.6 | GO:0048024 | regulation of mRNA splicing, via spliceosome(GO:0048024) |
| 0.2 | 6.4 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 1.6 | 6.2 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.1 | 6.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 70.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 31.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.9 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 5.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 5.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.7 | 3.7 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.1 | 3.4 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 3.3 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 3.1 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 2.6 | GO:0005880 | nuclear microtubule(GO:0005880) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.7 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.5 | 7.1 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.2 | 6.6 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
| 1.0 | 6.1 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.5 | 6.0 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 1.0 | 4.9 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.3 | 4.9 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 4.7 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 4.2 | GO:0005179 | hormone activity(GO:0005179) |
| 0.5 | 3.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.3 | 2.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 1.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.3 | 1.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.3 | 0.8 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.3 | 0.8 | PID MYC PATHWAY | C-MYC pathway |
| 0.2 | 0.8 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.2 | 0.8 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 0.4 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.0 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.2 | 0.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 0.8 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.2 | 0.8 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.8 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.8 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.2 | 0.5 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.5 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |