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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G79180
Z-value: 1.55
Transcription factors associated with AT1G79180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G79180
|
AT1G79180 | myb domain protein 63 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB63 | arTal_v1_Chr1_+_29786495_29786495 | 0.23 | 4.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 3.76 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.95 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.95 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.93 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.91 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_3398358_3398358 Show fit | 2.52 |
AT1G10370.1
|
Glutathione S-transferase family protein |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 2.23 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr1_+_23128651_23128651 Show fit | 2.06 |
AT1G62480.1
|
Vacuolar calcium-binding protein-like protein |
|
| arTal_v1_Chr4_+_13128394_13128394 Show fit | 2.00 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
| arTal_v1_Chr5_+_26447642_26447648 Show fit | 1.98 |
AT5G66170.3
AT5G66170.2 AT5G66170.1 |
sulfurtransferase 18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G79180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 11.9 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 5.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.2 | 4.5 | GO:0030091 | protein repair(GO:0030091) |
| 0.8 | 3.9 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
| 0.1 | 3.4 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.0 | 3.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.6 | 2.8 | GO:0009806 | lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807) |
| 0.5 | 2.5 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.4 | 2.5 | GO:0080148 | negative regulation of response to water deprivation(GO:0080148) |
| 0.4 | 2.3 | GO:0010581 | regulation of starch biosynthetic process(GO:0010581) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 10.4 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 3.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.3 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.2 | 2.2 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.2 | 2.1 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.4 | 1.7 | GO:0010316 | pyrophosphate-dependent phosphofructokinase complex(GO:0010316) |
| 0.2 | 1.7 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.1 | 1.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.3 | 1.4 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 11.9 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 5.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 1.0 | 4.8 | GO:0042085 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.4 | 4.5 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 4.5 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 4.1 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.5 | 2.5 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.8 | 2.4 | GO:0047364 | desulfoglucosinolate sulfotransferase activity(GO:0047364) |
| 0.6 | 2.3 | GO:0080042 | ADP-glucose pyrophosphohydrolase activity(GO:0080042) |
| 0.0 | 2.1 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 11.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.3 | 1.0 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.1 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 0.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 11.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.6 | 2.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.6 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.2 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |