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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G78700
Z-value: 1.40
Transcription factors associated with AT1G78700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G78700
|
AT1G78700 | BES1/BZR1 homolog 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BEH4 | arTal_v1_Chr1_+_29599349_29599349 | -0.80 | 6.4e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.79 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.78 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.77 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.75 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 2.40 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 2.38 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr4_-_14002069_14002124 Show fit | 2.23 |
AT4G28250.2
AT4G28250.3 AT4G28250.4 AT4G28250.1 |
expansin B3 |
|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 2.20 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 2.10 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 2.08 |
AT1G04560.1
|
AWPM-19-like family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G78700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.9 | 11.5 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 7.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.4 | 6.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 6.2 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 5.2 | GO:0009695 | jasmonic acid biosynthetic process(GO:0009695) |
| 0.2 | 4.7 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 4.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 3.8 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.1 | 3.5 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 37.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.4 | 14.7 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 10.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 7.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 6.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.1 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.2 | 4.8 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 2.6 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 2.6 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 2.0 | GO:0045177 | apical part of cell(GO:0045177) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 11.3 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.4 | 6.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.2 | 4.7 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.4 | 4.5 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 3.9 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.2 | 3.8 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.4 | 3.4 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 3.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 3.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.5 | 2.7 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 11.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 1.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 0.8 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.3 | 0.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.1 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 11.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.7 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.6 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 0.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 0.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.3 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |