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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G77920
Z-value: 0.67
Transcription factors associated with AT1G77920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G77920
|
AT1G77920 | bZIP transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TGA7 | arTal_v1_Chr1_+_29298243_29298243 | 0.74 | 2.6e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 1.38 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr2_+_235925_235925 Show fit | 0.98 |
AT2G01520.1
|
MLP-like protein 328 |
|
| arTal_v1_Chr1_+_4662698_4662752 Show fit | 0.88 |
AT1G13609.1
AT1G13609.2 |
Defensin-like (DEFL) family protein |
|
| arTal_v1_Chr4_+_5448049_5448049 Show fit | 0.87 |
AT4G08555.1
|
hypothetical protein |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 0.77 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 0.77 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_-_15425129_15425129 Show fit | 0.75 |
AT2G36800.1
|
don-glucosyltransferase 1 |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 0.69 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 0.66 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_28776861_28776861 Show fit | 0.63 |
AT1G76680.2
|
12-oxophytodienoate reductase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G77920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.1 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.0 | 1.9 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.0 | 1.9 | GO:0010043 | response to zinc ion(GO:0010043) |
| 0.1 | 1.4 | GO:0098869 | cellular oxidant detoxification(GO:0098869) |
| 0.1 | 1.3 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
| 0.0 | 1.3 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 1.3 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.0 | 1.3 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.0 | 1.2 | GO:0009698 | phenylpropanoid metabolic process(GO:0009698) |
| 0.2 | 1.1 | GO:0046482 | para-aminobenzoic acid metabolic process(GO:0046482) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.7 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 1.0 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 0.7 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.7 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.1 | 0.6 | GO:0000427 | plastid-encoded plastid RNA polymerase complex(GO:0000427) |
| 0.0 | 0.6 | GO:0000786 | nucleosome(GO:0000786) |
| 0.0 | 0.6 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
| 0.0 | 0.5 | GO:0005852 | eukaryotic translation initiation factor 3 complex(GO:0005852) |
| 0.0 | 0.5 | GO:0000145 | exocyst(GO:0000145) |
| 0.0 | 0.5 | GO:0016592 | mediator complex(GO:0016592) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.1 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 1.6 | GO:0008559 | xenobiotic-transporting ATPase activity(GO:0008559) |
| 0.2 | 1.4 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.2 | 1.2 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.1 | 1.2 | GO:0032440 | 2-alkenal reductase [NAD(P)] activity(GO:0032440) |
| 0.0 | 1.2 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.3 | 1.1 | GO:0080002 | UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002) |
| 0.1 | 1.1 | GO:0102360 | daphnetin 3-O-glucosyltransferase activity(GO:0102360) |
| 0.1 | 1.1 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
| 0.0 | 1.1 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 0.2 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.0 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.0 | 1.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.0 | 0.5 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.4 | REACTOME INWARDLY RECTIFYING K CHANNELS | Genes involved in Inwardly rectifying K+ channels |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.3 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.0 | 0.3 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |
| 0.1 | 0.2 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |