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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G77200
Z-value: 1.53
Transcription factors associated with AT1G77200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G77200
|
AT1G77200 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G77200 | arTal_v1_Chr1_-_29005281_29005281 | 0.23 | 4.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 2.93 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 2.88 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 2.86 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_7919345_7919345 Show fit | 2.15 |
AT2G18193.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr2_+_1993038_1993084 Show fit | 1.67 |
AT2G05440.2
AT2G05440.9 AT2G05440.5 AT2G05440.1 AT2G05440.6 AT2G05440.3 AT2G05440.4 AT2G05440.8 AT2G05440.7 |
GLYCINE RICH PROTEIN 9 |
|
| arTal_v1_Chr4_+_15544800_15544800 Show fit | 1.57 |
AT4G32190.1
|
Myosin heavy chain-related protein |
|
| arTal_v1_Chr5_+_4213955_4213955 Show fit | 1.56 |
AT5G13210.1
|
Uncharacterized conserved protein UCP015417, vWA |
|
| arTal_v1_Chr1_+_11911631_11911679 Show fit | 1.53 |
AT1G32870.3
AT1G32870.1 AT1G32870.2 |
NAC domain protein 13 |
|
| arTal_v1_Chr5_-_17888530_17888530 Show fit | 1.47 |
AT5G44400.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr5_+_23167774_23167842 Show fit | 1.44 |
AT5G57180.1
AT5G57180.2 AT5G57180.4 AT5G57180.3 |
chloroplast import apparatus 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G77200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.6 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.2 | 5.1 | GO:1901401 | regulation of tetrapyrrole metabolic process(GO:1901401) |
| 0.1 | 4.9 | GO:0035304 | regulation of protein dephosphorylation(GO:0035304) |
| 0.1 | 4.4 | GO:0051084 | 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085) |
| 0.1 | 4.0 | GO:0046283 | anthocyanin-containing compound metabolic process(GO:0046283) |
| 0.3 | 3.8 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
| 0.1 | 3.5 | GO:0016128 | phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131) |
| 0.1 | 3.5 | GO:0048510 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
| 0.1 | 3.5 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.1 | 3.2 | GO:0009902 | chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.4 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 10.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 10.6 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 9.0 | GO:0031976 | chloroplast thylakoid(GO:0009534) plastid thylakoid(GO:0031976) |
| 0.1 | 7.9 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 6.6 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 5.4 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.1 | 5.2 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.1 | 3.2 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 2.6 | GO:0031970 | organelle envelope lumen(GO:0031970) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.3 | GO:0003723 | RNA binding(GO:0003723) |
| 0.2 | 10.5 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 6.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 5.9 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 4.7 | GO:0031072 | heat shock protein binding(GO:0031072) |
| 0.0 | 4.2 | GO:0043531 | ADP binding(GO:0043531) |
| 0.3 | 3.8 | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815) |
| 0.2 | 3.6 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.0 | 3.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 3.2 | GO:0051015 | actin filament binding(GO:0051015) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.4 | 0.4 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.4 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.0 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 3.3 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.1 | 2.0 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.4 | 1.8 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.3 | 0.8 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.1 | 0.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.0 | 0.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.2 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |