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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G76890
Z-value: 1.00
Transcription factors associated with AT1G76890
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G76890
|
AT1G76890 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GT2 | arTal_v1_Chr1_-_28875435_28875435 | -0.16 | 5.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 1.46 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 1.45 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_-_23308680_23308680 Show fit | 1.34 |
AT5G57560.1
|
Xyloglucan endotransglucosylase/hydrolase family protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 1.18 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_+_7664871_7664871 Show fit | 1.17 |
AT5G22920.2
AT5G22920.1 |
CHY-type/CTCHY-type/RING-type Zinc finger protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 1.17 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_-_28549586_28549586 Show fit | 1.01 |
AT1G76080.1
|
chloroplastic drought-induced stress protein of 32 kD |
|
| arTal_v1_Chr3_+_17879542_17879542 Show fit | 1.00 |
AT3G48280.1
|
cytochrome P450, family 71, subfamily A, polypeptide 25 |
|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 0.99 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 0.98 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G76890
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 4.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.7 | 2.9 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.6 | 2.3 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 2.0 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) |
| 0.0 | 1.9 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.3 | 1.7 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.1 | 1.7 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.2 | 1.6 | GO:0043066 | apoptotic process(GO:0006915) regulation of apoptotic process(GO:0042981) negative regulation of apoptotic process(GO:0043066) |
| 0.1 | 1.6 | GO:0015749 | monosaccharide transport(GO:0015749) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.5 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 1.0 | GO:0000786 | nucleosome(GO:0000786) |
| 0.0 | 1.0 | GO:0005811 | lipid particle(GO:0005811) |
| 0.2 | 0.9 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
| 0.0 | 0.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 0.9 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 0.8 | GO:0030140 | trans-Golgi network transport vesicle(GO:0030140) |
| 0.1 | 0.7 | GO:0032541 | cortical endoplasmic reticulum(GO:0032541) |
| 0.1 | 0.6 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.1 | 0.6 | GO:0000243 | commitment complex(GO:0000243) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.1 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.2 | 2.9 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.0 | 2.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 2.0 | GO:0004096 | catalase activity(GO:0004096) |
| 0.0 | 2.0 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.2 | 1.8 | GO:0052634 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.1 | 1.8 | GO:0010333 | terpene synthase activity(GO:0010333) |
| 0.3 | 1.7 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.1 | 1.6 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.0 | 1.5 | GO:0005484 | SNAP receptor activity(GO:0005484) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.5 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.1 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.2 | 0.5 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 0.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |