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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G76880
Z-value: 0.52
Transcription factors associated with AT1G76880
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G76880
|
AT1G76880 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G76880 | arTal_v1_Chr1_+_28865314_28865314 | -0.79 | 7.2e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_10704010_10704018 Show fit | 0.64 |
AT3G28550.1
AT3G28550.2 |
Proline-rich extensin-like family protein |
|
| arTal_v1_Chr1_+_1520278_1520278 Show fit | 0.64 |
AT1G05240.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_+_4604688_4604688 Show fit | 0.54 |
AT1G13420.1
|
sulfotransferase 4B |
|
| arTal_v1_Chr2_-_16499524_16499524 Show fit | 0.53 |
AT2G39530.1
|
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr4_-_11585391_11585391 Show fit | 0.51 |
AT4G21830.2
|
methionine sulfoxide reductase B7 |
|
| arTal_v1_Chr4_-_11585542_11585542 Show fit | 0.51 |
AT4G21830.1
|
methionine sulfoxide reductase B7 |
|
| arTal_v1_Chr1_+_29373803_29373889 Show fit | 0.49 |
AT1G78090.1
AT1G78090.2 |
trehalose-6-phosphate phosphatase |
|
| arTal_v1_Chr2_+_13658888_13659004 Show fit | 0.44 |
AT2G32150.1
AT2G32150.2 AT2G32150.3 |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
|
| arTal_v1_Chr1_-_6293871_6293993 Show fit | 0.41 |
AT1G18270.4
AT1G18270.2 AT1G18270.3 AT1G18270.1 |
ketose-bisphosphate aldolase class-II family protein |
|
| arTal_v1_Chr1_+_5389952_5389952 Show fit | 0.41 |
AT1G15670.1
|
Galactose oxidase/kelch repeat superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G76880
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.0 | 0.6 | GO:0006521 | regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) |
| 0.0 | 0.5 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.1 | 0.4 | GO:0010353 | response to trehalose(GO:0010353) |
| 0.1 | 0.4 | GO:0010344 | seed oilbody biogenesis(GO:0010344) |
| 0.0 | 0.3 | GO:0009804 | coumarin metabolic process(GO:0009804) |
| 0.0 | 0.3 | GO:0061157 | RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157) |
| 0.0 | 0.3 | GO:0046620 | regulation of organ growth(GO:0046620) |
| 0.0 | 0.2 | GO:0019586 | uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586) |
| 0.0 | 0.2 | GO:0051452 | vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.2 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
| 0.0 | 0.1 | GO:0032044 | DSIF complex(GO:0032044) |
| 0.0 | 0.1 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.1 | GO:0031021 | interphase microtubule organizing center(GO:0031021) |
| 0.0 | 0.1 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 0.0 | 0.6 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.1 | 0.5 | GO:0080118 | brassinosteroid sulfotransferase activity(GO:0080118) |
| 0.0 | 0.5 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 0.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 0.3 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.0 | 0.3 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
| 0.0 | 0.2 | GO:0033843 | xyloglucan 6-xylosyltransferase activity(GO:0033843) |
| 0.0 | 0.2 | GO:0050378 | UDP-glucuronate 4-epimerase activity(GO:0050378) |
| 0.0 | 0.2 | GO:0034432 | bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |