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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G75240
Z-value: 1.10
Transcription factors associated with AT1G75240
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G75240
|
AT1G75240 | homeobox protein 33 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB33 | arTal_v1_Chr1_+_28241011_28241011 | 0.07 | 8.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_13016235_13016235 Show fit | 1.49 |
AT4G25470.1
|
C-repeat/DRE binding factor 2 |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 1.31 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr4_-_13317640_13317640 Show fit | 1.28 |
AT4G26320.1
|
arabinogalactan protein 13 |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 1.26 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 1.15 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.06 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.00 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr4_-_7417873_7417873 Show fit | 0.98 |
AT4G12510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_19481897_19481897 Show fit | 0.97 |
AT5G48070.1
|
xyloglucan endotransglucosylase/hydrolase 20 |
|
| arTal_v1_Chr4_-_18206684_18206684 Show fit | 0.97 |
AT4G39070.1
|
B-box zinc finger family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G75240
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.0 | GO:0009664 | plant-type cell wall organization(GO:0009664) |
| 0.1 | 4.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 3.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 3.4 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.5 | 2.9 | GO:0009413 | response to flooding(GO:0009413) |
| 0.0 | 2.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.5 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.1 | 2.4 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
| 0.0 | 2.3 | GO:0071383 | brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) cellular response to steroid hormone stimulus(GO:0071383) |
| 0.1 | 2.1 | GO:0048766 | root hair initiation(GO:0048766) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 45.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 14.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 9.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 6.5 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 6.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 5.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 2.4 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 2.0 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 1.7 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 4.2 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 3.6 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 3.6 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.2 | 3.4 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 3.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.1 | 2.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 2.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.7 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.5 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | PID IFNG PATHWAY | IFN-gamma pathway |
| 0.2 | 0.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.6 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.5 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.4 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.2 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.2 | 0.9 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.3 | 0.8 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.2 | 0.7 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.1 | 0.7 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.7 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.1 | 0.6 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.3 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 0.1 | 0.3 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |