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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G75080
Z-value: 0.69
Transcription factors associated with AT1G75080
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G75080
|
AT1G75080 | Brassinosteroid signaling positive regulator (BZR1) family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BZR1 | arTal_v1_Chr1_+_28185504_28185504 | -0.72 | 3.8e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 1.09 |
AT1G27730.1
|
salt tolerance zinc finger |
|
| arTal_v1_Chr1_-_23137254_23137254 Show fit | 1.05 |
AT1G62510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 0.91 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 0.91 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_+_20458952_20459006 Show fit | 0.88 |
AT1G54870.2
AT1G54870.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_-_19052582_19052582 Show fit | 0.86 |
AT1G51400.1
|
Photosystem II 5 kD protein |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 0.86 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
|
| arTal_v1_Chr4_-_14820595_14820595 Show fit | 0.85 |
AT4G30270.1
|
xyloglucan endotransglucosylase/hydrolase 24 |
|
| arTal_v1_Chr1_+_3288087_3288087 Show fit | 0.79 |
AT1G10070.3
AT1G10070.2 AT1G10070.1 |
branched-chain amino acid transaminase 2 |
|
| arTal_v1_Chr1_-_575085_575085 Show fit | 0.77 |
AT1G02660.1
|
alpha/beta-Hydrolases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G75080
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.3 | 1.1 | GO:0035264 | multicellular organism growth(GO:0035264) |
| 0.2 | 0.9 | GO:0043620 | regulation of DNA-templated transcription in response to stress(GO:0043620) |
| 0.0 | 0.9 | GO:0006094 | gluconeogenesis(GO:0006094) |
| 0.0 | 0.9 | GO:0010193 | response to ozone(GO:0010193) |
| 0.0 | 0.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.1 | 0.8 | GO:0009099 | valine biosynthetic process(GO:0009099) |
| 0.1 | 0.7 | GO:0080187 | floral organ senescence(GO:0080187) |
| 0.0 | 0.7 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
| 0.0 | 0.7 | GO:0015833 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0045239 | tricarboxylic acid cycle enzyme complex(GO:0045239) |
| 0.0 | 0.3 | GO:0031380 | RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380) |
| 0.0 | 0.3 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
| 0.0 | 0.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.2 | GO:0009897 | external side of plasma membrane(GO:0009897) |
| 0.0 | 0.2 | GO:0045281 | respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281) |
| 0.0 | 0.1 | GO:0034274 | Atg12-Atg5-Atg16 complex(GO:0034274) |
| 0.0 | 0.1 | GO:0032807 | DNA ligase IV complex(GO:0032807) |
| 0.0 | 0.1 | GO:0030014 | CCR4-NOT complex(GO:0030014) |
| 0.0 | 0.0 | GO:0033281 | TAT protein transport complex(GO:0033281) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | GO:0004848 | ureidoglycolate hydrolase activity(GO:0004848) |
| 0.1 | 0.9 | GO:0008106 | alcohol dehydrogenase (NADP+) activity(GO:0008106) |
| 0.0 | 0.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 0.9 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
| 0.1 | 0.8 | GO:0052656 | L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
| 0.2 | 0.7 | GO:0046423 | allene-oxide cyclase activity(GO:0046423) |
| 0.0 | 0.7 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 0.7 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.1 | 0.6 | GO:0004611 | phosphoenolpyruvate carboxykinase activity(GO:0004611) |
| 0.1 | 0.6 | GO:0000254 | C-4 methylsterol oxidase activity(GO:0000254) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |