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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G74650
Z-value: 3.25
Transcription factors associated with AT1G74650
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G74650
|
AT1G74650 | myb domain protein 31 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB31 | arTal_v1_Chr1_+_28041146_28041167 | 0.39 | 1.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 4.47 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 4.13 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 3.84 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 3.74 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 3.66 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 3.65 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 3.51 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 3.32 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 3.27 |
AT2G47180.1
|
galactinol synthase 1 |
|
| arTal_v1_Chr4_-_2992618_2992618 Show fit | 3.25 |
AT4G05631.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G74650
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 22.9 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.1 | 19.4 | GO:0043043 | peptide biosynthetic process(GO:0043043) |
| 0.2 | 18.2 | GO:0006457 | protein folding(GO:0006457) |
| 0.2 | 15.0 | GO:0009658 | chloroplast organization(GO:0009658) |
| 0.3 | 13.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 12.3 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.3 | 11.3 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.3 | 9.5 | GO:0042026 | protein refolding(GO:0042026) |
| 0.2 | 9.4 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.3 | 9.3 | GO:0006012 | galactose metabolic process(GO:0006012) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 132.3 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 93.9 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.1 | 64.9 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 62.7 | GO:0009536 | plastid(GO:0009536) |
| 0.1 | 27.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 23.3 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.2 | 20.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.2 | 18.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 18.3 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.2 | 13.7 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 45.3 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 38.0 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.2 | 25.4 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 23.3 | GO:0016887 | ATPase activity(GO:0016887) |
| 0.1 | 22.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 22.3 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.2 | 19.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.2 | 17.3 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.1 | 16.6 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 15.9 | GO:0003677 | DNA binding(GO:0003677) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 4.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.6 | 3.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.9 | 2.8 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.9 | 2.8 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 1.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.6 | 1.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.6 | 1.8 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
| 0.5 | 1.8 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.4 | 1.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.2 | 1.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.6 | REACTOME TRANSLATION | Genes involved in Translation |
| 0.8 | 4.2 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.8 | 3.2 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.6 | 3.1 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.4 | 2.9 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.9 | 2.8 | REACTOME GAB1 SIGNALOSOME | Genes involved in GAB1 signalosome |
| 0.9 | 2.8 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 2.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 2.3 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.3 | 2.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |