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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G74480
Z-value: 1.16
Transcription factors associated with AT1G74480
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G74480
|
AT1G74480 | RWP-RK domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RKD2 | arTal_v1_Chr1_-_27994178_27994178 | 0.37 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.12 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr1_+_8544248_8544308 Show fit | 2.10 |
AT1G24148.1
AT1G24148.2 |
hypothetical protein |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 1.98 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr5_-_25661007_25661007 Show fit | 1.31 |
AT5G64120.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr2_+_3614986_3614986 Show fit | 1.28 |
AT2G07981.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_9140439_9140439 Show fit | 1.25 |
AT1G26410.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_+_4794664_4794756 Show fit | 1.20 |
AT1G13990.1
AT1G13990.2 AT1G13990.3 |
plant/protein |
|
| arTal_v1_Chr5_+_8217191_8217213 Show fit | 1.20 |
AT5G24210.1
AT5G24210.2 AT5G24210.3 |
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr4_-_8123835_8123835 Show fit | 1.10 |
AT4G14090.1
|
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr2_+_14577083_14577083 Show fit | 1.06 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G74480
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.1 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.0 | 2.0 | GO:0022900 | electron transport chain(GO:0022900) |
| 0.0 | 1.8 | GO:0043622 | cortical microtubule organization(GO:0043622) |
| 0.3 | 1.4 | GO:0006788 | heme oxidation(GO:0006788) |
| 0.1 | 1.3 | GO:0006817 | phosphate ion transport(GO:0006817) |
| 0.3 | 1.1 | GO:0097054 | L-glutamate biosynthetic process(GO:0097054) |
| 0.2 | 1.1 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.2 | 1.1 | GO:0010390 | histone monoubiquitination(GO:0010390) |
| 0.1 | 1.1 | GO:0035336 | long-chain fatty-acyl-CoA metabolic process(GO:0035336) |
| 0.3 | 1.0 | GO:0046156 | siroheme biosynthetic process(GO:0019354) siroheme metabolic process(GO:0046156) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.6 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 1.5 | GO:0005874 | microtubule(GO:0005874) |
| 0.2 | 0.9 | GO:0005960 | glycine cleavage complex(GO:0005960) |
| 0.2 | 0.8 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
| 0.1 | 0.8 | GO:0005849 | mRNA cleavage factor complex(GO:0005849) |
| 0.0 | 0.8 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 0.8 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 0.7 | GO:0048500 | signal recognition particle(GO:0048500) |
| 0.1 | 0.7 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 0.4 | GO:0009501 | amyloplast(GO:0009501) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.1 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.1 | 1.6 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
| 0.0 | 1.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 1.4 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
| 0.0 | 1.4 | GO:0080044 | quercetin 7-O-glucosyltransferase activity(GO:0080044) |
| 0.1 | 1.3 | GO:0015114 | phosphate ion transmembrane transporter activity(GO:0015114) |
| 0.0 | 1.3 | GO:0043621 | protein self-association(GO:0043621) |
| 0.4 | 1.1 | GO:0016643 | glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643) |
| 0.1 | 1.1 | GO:0061608 | nuclear import signal receptor activity(GO:0061608) |
| 0.0 | 1.1 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 0.2 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.0 | 0.1 | PID CDC42 PATHWAY | CDC42 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 0.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.0 | 0.2 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
| 0.0 | 0.1 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |