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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G74480

Z-value: 1.16

Transcription factors associated with AT1G74480

Gene Symbol Gene ID Gene Info
AT1G74480
AT1G74480 RWP-RK domain-containing protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
RKD2arTal_v1_Chr1_-_27994178_279941780.372.0e-01Click!

Activity profile of AT1G74480 motif

Sorted Z-values of AT1G74480 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_6833564 2.12 AT5G20250.2
AT5G20250.1
AT5G20250.4
AT5G20250.3
DIN10
Raffinose synthase family protein
Chr1_+_8544248 2.10 AT1G24148.1
AT1G24148.2
AT1G24148
hypothetical protein
Chr4_+_11150049 1.98 AT4G20820.1
AT4G20820
FAD-binding Berberine family protein
Chr5_-_25661007 1.31 AT5G64120.1
AT5G64120
Peroxidase superfamily protein
Chr2_+_3614986 1.28 AT2G07981.1
AT2G07981
hypothetical protein
Chr1_-_9140439 1.25 AT1G26410.1
AT1G26410
FAD-binding Berberine family protein
Chr1_+_4794664 1.20 AT1G13990.1
AT1G13990.2
AT1G13990.3
AT1G13990
plant/protein
Chr5_+_8217191 1.20 AT5G24210.1
AT5G24210.2
AT5G24210.3
AT5G24210
alpha/beta-Hydrolases superfamily protein
Chr4_-_8123835 1.10 AT4G14090.1
AT4G14090
UDP-Glycosyltransferase superfamily protein
Chr2_+_14577083 1.06 AT2G34620.1
AT2G34620
Mitochondrial transcription termination factor family protein
Chr3_-_21008064 1.06 AT3G56710.1
AT3G56710.2
SIB1
sigma factor binding protein 1
Chr1_+_28746833 0.99 AT1G76600.1
AT1G76600
poly polymerase
Chr3_-_18559326 0.99 AT3G50060.1
MYB77
myb domain protein 77
Chr5_-_22546801 0.95 AT5G55670.2
AT5G55670
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr4_-_15931332 0.91 AT4G33010.2
AT4G33010.1
GLDP1
glycine decarboxylase P-protein 1
Chr4_-_2234689 0.86 AT4G04490.1
CRK36
cysteine-rich RLK (RECEPTOR-like protein kinase) 36
Chr5_-_22547062 0.85 AT5G55670.1
AT5G55670
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_+_22824414 0.84 AT1G61800.2
AT1G61800.1
GPT2
glucose-6-phosphate/phosphate translocator 2
Chr5_-_22055443 0.84 AT5G54300.1
AT5G54300
cotton fiber-like protein (DUF761)
Chr1_+_25804392 0.84 AT1G68720.1
TADA
tRNA arginine adenosine deaminase
Chr5_-_17099595 0.84 AT5G42650.1
AOS
allene oxide synthase
Chr2_-_425810 0.81 AT2G01918.1
PQL3
PsbQ-like 3
Chr1_-_575085 0.80 AT1G02660.1
AT1G02660
alpha/beta-Hydrolases superfamily protein
Chr4_-_12745352 0.78 AT4G24700.1
AT4G24700
hypothetical protein
Chr4_+_15617361 0.78 AT4G32350.1
AT4G32350.2
AT4G32350.3
AT4G32350
Regulator of Vps4 activity in the MVB pathway protein
Chr1_-_27719741 0.78 AT1G73700.1
AT1G73700
MATE efflux family protein
Chr2_-_14211693 0.78 AT2G33550.1
AT2G33550
Homeodomain-like superfamily protein
Chr1_-_7940625 0.77 AT1G22490.2
AT1G22490
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_26226731 0.76 AT1G69720.1
AT1G69720.2
HO3
heme oxygenase 3
Chr4_+_9965742 0.76 AT4G17940.1
AT4G17940
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_22589789 0.75 AT1G61255.1
AT1G61255
hypothetical protein
Chr2_+_8550253 0.74 AT2G19810.1
OZF1
CCCH-type zinc finger family protein
Chr2_+_19472573 0.74 AT2G47450.1
CAO
chloroplast signal recognition particle component (CAO)
Chr5_-_23009709 0.73 AT5G56880.1
AT5G56880
hypothetical protein
Chr5_+_2856740 0.73 AT5G08780.1
AT5G08780
winged-helix DNA-binding transcription factor family protein
Chr3_+_12420556 0.73 AT3G30750.1
AT3G30750

Chr5_+_4847247 0.73 AT5G14970.1
AT5G14970
seed maturation-like protein
Chr4_-_3950602 0.73 AT4G06700.1
AT4G06700

Chr3_-_20718866 0.72 AT3G55840.1
AT3G55840
Hs1pro-1 protein
Chr4_-_15424265 0.72 AT4G31880.2
AT4G31880.1
AT4G31880
transcriptional regulator
Chr1_-_1148352 0.72 AT1G04290.2
AT1G04290
Thioesterase superfamily protein
Chr4_+_17707894 0.72 AT4G37690.1
AT4G37690
Galactosyl transferase GMA12/MNN10 family protein
Chr2_-_16237280 0.71 AT2G38870.1
AT2G38870
Serine protease inhibitor, potato inhibitor I-type family protein
Chr5_+_5924372 0.70 AT5G17900.1
AT5G17900
microfibrillar-associated protein-like protein
Chr4_-_15507176 0.69 AT4G32070.2
AT4G32070.1
Phox4
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Chr5_+_9584092 0.68 AT5G27230.1
AT5G27230
Frigida-like protein
Chr5_+_26625049 0.68 AT5G66690.1
UGT72E2
UDP-Glycosyltransferase superfamily protein
Chr1_-_7940805 0.68 AT1G22490.1
AT1G22490
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_18376806 0.67 AT1G49640.1
AT1G49640
alpha/beta-Hydrolases superfamily protein
Chr4_-_13267002 0.66 AT4G26190.4
AT4G26190.3
AT4G26190.5
AT4G26190.1
AT4G26190.2
AT4G26190
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_25580194 0.65 AT1G68250.2
AT1G68250.1
AT1G68250
hypothetical protein
Chr4_+_8520819 0.65 AT4G14890.1
FdC1
2Fe-2S ferredoxin-like superfamily protein
Chr5_+_17154718 0.65 AT5G42780.1
HB27
homeobox protein 27
Chr3_+_13581147 0.64 AT3G33055.1
AT3G33055

Chr1_+_26227086 0.64 AT1G69720.3
HO3
heme oxygenase 3
Chr1_-_26117765 0.63 AT1G69480.2
AT1G69480
EXS (ERD1/XPR1/SYG1) family protein
Chr2_-_13691155 0.63 AT2G32240.1
AT2G32240
early endosome antigen
Chr4_-_15111599 0.63 AT4G31030.1
AT4G31030
Putative membrane lipoprotein
Chr1_-_26117955 0.63 AT1G69480.1
AT1G69480
EXS (ERD1/XPR1/SYG1) family protein
Chr3_-_19782680 0.63 AT3G53350.2
AT3G53350.8
AT3G53350.9
AT3G53350.1
AT3G53350.6
RIP3
ROP interactive partner 4
Chr3_+_6180621 0.62 AT3G18050.1
AT3G18050
GPI-anchored protein
Chr1_+_29593756 0.60 AT1G78680.2
AT1G78680.1
GGH2
gamma-glutamyl hydrolase 2
Chr1_-_30018231 0.60 AT1G79790.1
AT1G79790.4
AT1G79790.2
FHY1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_2052170 0.60 AT1G06690.1
AT1G06690
NAD(P)-linked oxidoreductase superfamily protein
Chr5_-_11721564 0.59 AT5G31804.1
AT5G31804

Chr3_+_231610 0.59 AT3G01610.1
AT3G01610.2
CDC48C
cell division cycle 48C
Chr4_-_13683594 0.57 AT4G27330.1
SPL
sporocyteless (SPL)
Chr1_+_1862184 0.57 AT1G06135.1
AT1G06135
transmembrane protein
Chr2_+_18894030 0.56 AT2G45910.2
AT2G45910.1
AT2G45910
U-box domain-containing protein kinase family protein
Chr2_-_9978090 0.55 AT2G23430.1
ICK1
Cyclin-dependent kinase inhibitor family protein
Chr5_+_16366353 0.55 AT5G40850.2
AT5G40850.3
UPM1
urophorphyrin methylase 1
Chr5_+_3502092 0.54 AT5G11050.1
MYB64
myb domain protein 64
Chr5_+_7480413 0.54 AT5G22530.1
AT5G22530
hypothetical protein
Chr1_+_24612620 0.54 AT1G66120.1
AAE11
AMP-dependent synthetase and ligase family protein
Chr3_-_1108069 0.53 AT3G04210.1
AT3G04210
Disease resistance protein (TIR-NBS class)
Chr5_+_1130031 0.53 AT5G04140.2
GLU1
glutamate synthase 1
Chr5_+_1129785 0.53 AT5G04140.1
GLU1
glutamate synthase 1
Chr3_-_1108252 0.53 AT3G04210.2
AT3G04210
Disease resistance protein (TIR-NBS class)
Chr1_-_1148533 0.52 AT1G04290.1
AT1G04290
Thioesterase superfamily protein
Chr5_+_15634444 0.52 AT5G39050.1
PMAT1
HXXXD-type acyl-transferase family protein
Chr5_-_23773973 0.52 AT5G58870.1
ftsh9
FTSH protease 9
Chr2_-_13631929 0.51 AT2G32020.1
AT2G32020
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr4_-_15258882 0.51 AT4G31450.1
AT4G31450
RING/U-box superfamily protein
Chr5_-_22332078 0.50 AT5G55040.2
AT5G55040.1
AT5G55040
DNA-binding bromodomain-containing protein
Chr4_+_6181881 0.50 AT4G09820.1
TT8
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_16365900 0.50 AT5G40850.1
UPM1
urophorphyrin methylase 1
Chr2_+_7723047 0.50 AT2G17770.1
AT2G17770.2
BZIP27
basic region/leucine zipper motif 27
Chr4_-_3368502 0.50 AT4G06538.1
AT4G06538

Chr3_-_19781985 0.49 AT3G53350.5
AT3G53350.4
RIP3
ROP interactive partner 4
Chr3_+_6637347 0.49 AT3G19184.1
AT3G19184.2
AT3G19184
AP2/B3-like transcriptional factor family protein
Chr5_-_24578200 0.49 AT5G61090.2
AT5G61090
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr1_+_25880155 0.49 AT1G68840.1
RAV2
related to ABI3/VP1 2
Chr1_+_25880323 0.48 AT1G68840.2
RAV2
related to ABI3/VP1 2
Chr4_-_15258704 0.48 AT4G31450.2
AT4G31450
RING/U-box superfamily protein
Chr1_+_18249866 0.48 AT1G49330.1
AT1G49330
hydroxyproline-rich glycoprotein family protein
Chr3_+_22964534 0.48 AT3G62010.1
AT3G62010.2
AT3G62010
metal ion-binding protein
Chr2_-_17403050 0.47 AT2G41710.3
AT2G41710.2
AT2G41710.1
AT2G41710.4
AT2G41710
Integrase-type DNA-binding superfamily protein
Chr2_+_17272741 0.47 AT2G41440.2
AT2G41440
agamous-like MADS-box protein
Chr2_+_14665667 0.47 AT2G34770.1
FAH1
fatty acid hydroxylase 1
Chr5_+_25210301 0.47 AT5G62770.1
AT5G62770
membrane-associated kinase regulator, putative (DUF1645)
Chr1_-_24812661 0.46 AT1G66500.1
AT1G66500
Pre-mRNA cleavage complex II
Chr3_+_20666887 0.46 AT3G55690.1
AT3G55690
hypothetical protein
Chr5_-_19994672 0.46 AT5G49310.1
IMPA-5
importin alpha isoform 5
Chr4_+_12535972 0.45 AT4G24150.2
AT4G24150.1
GRF8
growth-regulating factor 8
Chr1_-_20857630 0.45 AT1G55800.1
AT1G55800
hypothetical protein
Chr2_-_591689 0.45 AT2G02230.1
PP2-B1
phloem protein 2-B1
Chr3_+_16123426 0.45 AT3G44540.1
AT3G44540.3
FAR4
fatty acid reductase 4
Chr3_-_22871612 0.44 AT3G61780.1
emb1703
embryo defective 1703
Chr1_+_4726770 0.44 AT1G13790.1
AT1G13790.2
FDM4
XH/XS domain-containing protein
Chr2_-_7765276 0.43 AT2G17870.1
CSP3
cold shock domain protein 3
Chr4_-_18133863 0.43 AT4G38870.1
AT4G38870
F-box and associated interaction domains-containing protein
Chr5_-_24577714 0.43 AT5G61090.1
AT5G61090
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_-_8284001 0.43 AT5G24318.2
AT5G24318.4
AT5G24318.3
AT5G24318.1
AT5G24318
O-Glycosyl hydrolases family 17 protein
Chr4_-_16773456 0.43 AT4G35250.1
HCF244
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_-_14619573 0.43 AT4G29900.2
AT4G29900.1
ACA10
autoinhibited Ca(2+)-ATPase 10
Chr3_-_7082178 0.43 AT3G20300.1
AT3G20300
extracellular ligand-gated ion channel protein (DUF3537)
Chr5_-_14566439 0.42 AT5G36925.1
AT5G36925
hypothetical protein
Chr4_+_11097843 0.42 AT4G20700.2
AT4G20700
RNA-binding; reverse transcriptase, putative (DUF1204)
Chr4_+_17927198 0.42 AT4G38225.1
AT4G38225.3
AT4G38225.2
AT4G38225
glycerol kinase
Chr4_+_12537290 0.42 AT4G24150.3
GRF8
growth-regulating factor 8
Chr1_-_9899876 0.41 AT1G28300.1
LEC2
AP2/B3-like transcriptional factor family protein
Chr5_+_26572265 0.41 AT5G66580.1
AT5G66580
hypothetical protein
Chr5_+_7192239 0.41 AT5G21150.1
AGO9
Argonaute family protein
Chr3_+_16124021 0.41 AT3G44540.2
FAR4
fatty acid reductase 4
Chr3_-_19781741 0.41 AT3G53350.3
RIP3
ROP interactive partner 4
Chr1_+_20757767 0.41 AT1G55570.1
sks12
SKU5 similar 12
Chr3_-_19782230 0.41 AT3G53350.7
RIP3
ROP interactive partner 4
Chr5_-_26833903 0.40 AT5G67250.1
SKIP2
SKP1/ASK1-interacting protein 2
Chr3_+_296024 0.40 AT3G01830.2
AT3G01830.1
AT3G01830
Calcium-binding EF-hand family protein
Chr1_-_9027955 0.40 AT1G26110.1
DCP5
decapping 5
Chr3_-_5894518 0.40 AT3G17250.1
AT3G17250
Protein phosphatase 2C family protein
Chr1_-_9027786 0.40 AT1G26110.2
DCP5
decapping 5
Chr2_+_7722825 0.39 AT2G17770.3
BZIP27
basic region/leucine zipper motif 27
Chr1_+_4144955 0.39 AT1G12220.3
RPS5
Disease resistance protein (CC-NBS-LRR class) family
Chr1_+_6315636 0.39 AT1G18350.1
MKK7
MAP kinase kinase 7
Chr1_-_30006911 0.39 AT1G79740.4
AT1G79740.3
AT1G79740
hAT transposon superfamily
Chr1_+_25781801 0.39 AT1G68670.1
AT1G68670
myb-like transcription factor family protein
Chr1_+_4144788 0.38 AT1G12220.1
RPS5
Disease resistance protein (CC-NBS-LRR class) family
Chr3_+_13601800 0.38 AT3G33058.1
AT3G33058

Chr3_-_21897787 0.38 AT3G59230.1
AT3G59230
RNI-like superfamily protein
Chr4_-_12018643 0.38 AT4G22920.2
NYE1
non-yellowing 1
Chr2_-_14325205 0.38 AT2G33855.1
AT2G33855
transmembrane protein
Chr1_+_20609675 0.38 AT1G55250.4
HUB2
histone mono-ubiquitination 2
Chr4_-_9308442 0.38 AT4G16520.2
AT4G16520.3
AT4G16520.1
ATG8F
Ubiquitin-like superfamily protein
Chr1_+_20610119 0.38 AT1G55250.2
HUB2
histone mono-ubiquitination 2
Chr4_+_17517743 0.37 AT4G37235.1
AT4G37235
Uncharacterized protein family (UPF0497)
Chr3_-_23255275 0.37 AT3G62900.2
AT3G62900.3
AT3G62900.1
AT3G62900
CW-type Zinc Finger
Chr1_+_20151016 0.37 AT1G53990.1
GLIP3
GDSL-motif lipase 3
Chr2_+_14833848 0.37 AT2G35200.1
AT2G35200
DUF740 family protein
Chr2_+_19679730 0.37 AT2G48120.2
AT2G48120.1
PAC
pale cress protein (PAC)
Chr4_-_12018492 0.37 AT4G22920.1
NYE1
non-yellowing 1
Chr3_+_5480416 0.37 AT3G16175.1
AT3G16175
Thioesterase superfamily protein
Chr1_+_14324216 0.37 AT1G38176.1
AT1G38176

Chr4_+_9385119 0.36 AT4G16670.2
AT4G16670.3
AT4G16670.1
AT4G16670
auxin canalization protein (DUF828)
Chr2_+_17271143 0.36 AT2G41440.1
AT2G41440.3
AT2G41440.4
AT2G41440
agamous-like MADS-box protein
Chr3_+_2132758 0.36 AT3G06760.2
AT3G06760.1
AT3G06760
Drought-responsive family protein
Chr3_+_19108990 0.36 AT3G51510.1
AT3G51510
transmembrane protein
Chr5_+_23420184 0.36 AT5G57800.1
CER3
Fatty acid hydroxylase superfamily
Chr2_-_9393594 0.36 AT2G22100.1
AT2G22100
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr2_-_14731156 0.36 AT2G34920.1
AT2G34920.2
EDA18
RING/U-box superfamily protein
Chr4_-_11447335 0.36 AT4G21510.2
AT4G21510.1
FBS2
F-box family protein
Chr3_-_4709176 0.36 AT3G14180.1
ASIL2
sequence-specific DNA binding transcription factor
Chr2_+_12759973 0.36 AT2G29940.1
ABCG31
pleiotropic drug resistance 3
Chr1_-_7892118 0.36 AT1G22340.1
UGT85A7
UDP-glucosyl transferase 85A7
Chr5_-_15987339 0.35 AT5G39930.1
CLPS5
CLP1-similar protein 5
Chr5_-_1894124 0.35 AT5G06250.2
AT5G06250.1
AT5G06250.3
AT5G06250.4
AT5G06250.5
DPA4
AP2/B3-like transcriptional factor family protein
Chr3_-_3088195 0.35 AT3G10010.1
DML2
demeter-like 2
Chr2_-_6058620 0.35 AT2G14290.1
AT2G14290
LL-diaminopimelate protein (DUF295)
Chr3_-_18780412 0.35 AT3G50610.1
AT3G50610.2
AT3G50610
DNA-directed RNA polymerase II subunit RPB1-like protein
Chr1_-_27199468 0.35 AT1G72260.1
THI2.1
thionin 2.1
Chr3_-_7086894 0.34 AT3G20310.1
ERF7
ethylene response factor 7
Chr1_+_4144257 0.34 AT1G12220.2
RPS5
Disease resistance protein (CC-NBS-LRR class) family
Chr2_-_6409152 0.33 AT2G14910.2
AT2G14910.1
AT2G14910
MAR-binding filament-like protein
Chr1_-_30007190 0.33 AT1G79740.2
AT1G79740.1
AT1G79740
hAT transposon superfamily
Chr3_+_15598179 0.33 AT3G43690.1
AT3G43690

Chr4_-_2577974 0.33 AT4G05030.1
AT4G05030
Copper transport protein family
Chr3_+_18901997 0.33 AT3G50860.2
AT3G50860.1
AT3G50860
Clathrin adaptor complex small chain family protein
Chr3_-_8718211 0.33 AT3G24140.1
AT3G24140.2
FMA
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_8363675 0.33 AT1G23610.1
AT1G23610
hypothetical protein
Chr5_+_2967170 0.33 AT5G09560.1
AT5G09560
RNA-binding KH domain-containing protein
Chr4_-_9643738 0.33 AT4G17160.1
RABB1a
RAB GTPase homolog B1A
Chr1_-_23117594 0.33 AT1G62450.1
AT1G62450
Immunoglobulin E-set superfamily protein
Chr1_-_20856122 0.32 AT1G55790.1
AT1G55790
ferredoxin-fold anticodon-binding domain protein
Chr4_+_5723651 0.32 AT4G08920.1
CRY1
cryptochrome 1
Chr3_+_15576456 0.32 AT3G43680.1
AT3G43680

Chr2_-_16797585 0.32 AT2G40220.1
ABI4
Integrase-type DNA-binding superfamily protein
Chr3_-_162905 0.32 AT3G01420.1
DOX1
Peroxidase superfamily protein
Chr1_-_22602252 0.32 AT1G61270.1
AT1G61270
Transmembrane amino acid transporter family protein
Chr1_+_23844954 0.32 AT1G64255.1
AT1G64255
MuDR family transposase
Chr1_-_5088724 0.32 AT1G14770.2
AT1G14770
RING/FYVE/PHD zinc finger superfamily protein
Chr4_+_13236448 0.31 AT4G26120.1
AT4G26120
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr3_-_3088550 0.31 AT3G10010.2
DML2
demeter-like 2
Chr1_-_16645265 0.31 AT1G43886.1
AT1G43886

Chr1_-_27008184 0.31 AT1G71810.1
AT1G71810
Protein kinase superfamily protein
Chr5_+_5099595 0.31 AT5G15670.1
AT5G15670
F-box family protein
Chr4_-_9896688 0.31 AT4G17800.1
AT4G17800
Putative AT-hook DNA-binding family protein
Chr4_+_11098270 0.31 AT4G20700.1
AT4G20700
RNA-binding; reverse transcriptase, putative (DUF1204)
Chr3_-_18096891 0.31 AT3G48800.1
AT3G48800
Sterile alpha motif (SAM) domain-containing protein
Chr2_+_11860218 0.31 AT2G27830.1
AT2G27830
hypothetical protein
Chr2_-_10885295 0.30 AT2G25565.1
AT2G25565
C3HC4-type RING finger protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G74480

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0046156 siroheme biosynthetic process(GO:0019354) siroheme metabolic process(GO:0046156)
0.3 0.8 GO:0035436 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.3 0.8 GO:0002100 tRNA wobble adenosine to inosine editing(GO:0002100)
0.3 1.4 GO:0006788 heme oxidation(GO:0006788)
0.3 1.1 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.2 1.1 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.2 1.1 GO:0010390 histone monoubiquitination(GO:0010390)
0.2 0.8 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
0.2 0.6 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.2 0.5 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.2 0.7 GO:0099636 cytoplasmic streaming(GO:0099636)
0.2 0.8 GO:1901568 icosanoid metabolic process(GO:0006690) fatty acid derivative metabolic process(GO:1901568)
0.2 0.5 GO:2000029 regulation of proanthocyanidin biosynthetic process(GO:2000029)
0.2 1.0 GO:0048533 sporocyte differentiation(GO:0048533)
0.2 0.5 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.1 0.7 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 1.0 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 0.9 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
0.1 0.5 GO:0010353 response to trehalose(GO:0010353)
0.1 0.3 GO:0010377 guard cell fate commitment(GO:0010377) response to low humidity(GO:0090547)
0.1 0.3 GO:1903793 singlet oxygen-mediated programmed cell death(GO:0010343) positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of anion channel activity(GO:1901529) response to strigolactone(GO:1902347) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.1 0.7 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.1 0.7 GO:0031936 nucleosome positioning(GO:0016584) negative regulation of chromatin silencing(GO:0031936)
0.1 0.4 GO:0080168 abscisic acid transport(GO:0080168)
0.1 1.1 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.1 0.6 GO:0046900 tetrahydrofolylpolyglutamate metabolic process(GO:0046900)
0.1 0.4 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 0.6 GO:0010018 far-red light signaling pathway(GO:0010018)
0.1 0.3 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.1 0.7 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.1 0.3 GO:0007266 Rho protein signal transduction(GO:0007266)
0.1 0.6 GO:0045740 positive regulation of DNA replication(GO:0045740)
0.1 0.4 GO:0043447 cuticle hydrocarbon biosynthetic process(GO:0006723) alkane biosynthetic process(GO:0043447)
0.1 0.4 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.1 0.8 GO:0070475 rRNA base methylation(GO:0070475)
0.1 0.5 GO:0010358 leaf shaping(GO:0010358)
0.1 1.3 GO:0006817 phosphate ion transport(GO:0006817)
0.1 0.2 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.0 0.4 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.0 1.0 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.0 0.4 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.0 1.8 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.5 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.7 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.3 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.0 0.1 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.0 0.2 GO:0000710 meiotic mismatch repair(GO:0000710) maintenance of DNA repeat elements(GO:0043570)
0.0 0.1 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.0 0.7 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.1 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.0 0.1 GO:0071049 nuclear mRNA surveillance of mRNA 3'-end processing(GO:0071031) CUT catabolic process(GO:0071034) CUT metabolic process(GO:0071043) nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription(GO:0071049)
0.0 0.7 GO:0050826 response to freezing(GO:0050826)
0.0 0.4 GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation(GO:0006388)
0.0 0.1 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.9 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.7 GO:0006284 base-excision repair(GO:0006284)
0.0 0.1 GO:1901333 positive regulation of lateral root development(GO:1901333)
0.0 0.2 GO:0045739 positive regulation of DNA repair(GO:0045739)
0.0 0.3 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.3 GO:0006282 regulation of DNA repair(GO:0006282)
0.0 0.3 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 0.4 GO:0010207 photosystem II assembly(GO:0010207)
0.0 0.1 GO:0043153 entrainment of circadian clock by photoperiod(GO:0043153)
0.0 2.0 GO:0022900 electron transport chain(GO:0022900)
0.0 0.4 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862)
0.0 0.2 GO:0032366 intracellular sterol transport(GO:0032366)
0.0 2.1 GO:0080167 response to karrikin(GO:0080167)
0.0 0.3 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.0 0.6 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.0 0.1 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.0 0.1 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.0 0.6 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.6 GO:2000028 regulation of photoperiodism, flowering(GO:2000028)
0.0 0.2 GO:0009901 anther dehiscence(GO:0009901)
0.0 0.2 GO:0009085 lysine biosynthetic process(GO:0009085)
0.0 0.2 GO:0006521 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.0 0.9 GO:0009808 lignin metabolic process(GO:0009808)
0.0 0.1 GO:0010262 somatic embryogenesis(GO:0010262)
0.0 0.2 GO:0010152 pollen maturation(GO:0010152)
0.0 0.6 GO:0034968 histone lysine methylation(GO:0034968)
0.0 0.1 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.0 0.4 GO:0010027 thylakoid membrane organization(GO:0010027)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0005960 glycine cleavage complex(GO:0005960)
0.2 0.8 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.1 0.4 GO:0009501 amyloplast(GO:0009501)
0.1 0.4 GO:0070505 pollen coat(GO:0070505)
0.1 0.3 GO:0030093 chloroplast photosystem I(GO:0030093)
0.1 0.2 GO:0032301 MutSalpha complex(GO:0032301)
0.1 0.8 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.1 0.7 GO:0048500 signal recognition particle(GO:0048500)
0.1 0.7 GO:0000786 nucleosome(GO:0000786)
0.0 0.8 GO:0072686 mitotic spindle(GO:0072686)
0.0 0.2 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.0 0.8 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.0 0.2 GO:0070552 BRISC complex(GO:0070552)
0.0 1.6 GO:0010287 plastoglobule(GO:0010287)
0.0 0.2 GO:0005880 nuclear microtubule(GO:0005880)
0.0 0.4 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.3 GO:0009986 cell surface(GO:0009986)
0.0 1.5 GO:0005874 microtubule(GO:0005874)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 GO:0016643 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.3 2.1 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.3 0.9 GO:0004375 glycine dehydrogenase (decarboxylating) activity(GO:0004375) oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor(GO:0016642)
0.3 0.8 GO:0015152 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.2 0.7 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.2 1.4 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.2 0.5 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.2 0.8 GO:0004000 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.2 0.5 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.2 0.8 GO:0016436 rRNA (uridine) methyltransferase activity(GO:0016436) rRNA (uridine-N3-)-methyltransferase activity(GO:0070042)
0.2 0.6 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.1 1.6 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.1 0.7 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.1 0.9 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 0.8 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.1 0.8 GO:0019825 oxygen binding(GO:0019825)
0.1 0.4 GO:0009924 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.1 0.3 GO:0005094 Rho GDP-dissociation inhibitor activity(GO:0005094)
0.1 1.0 GO:0008169 C-methyltransferase activity(GO:0008169)
0.1 0.4 GO:0035197 siRNA binding(GO:0035197)
0.1 0.4 GO:0016731 oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor(GO:0016731)
0.1 1.3 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.1 0.4 GO:0051731 polynucleotide 5'-hydroxyl-kinase activity(GO:0051731)
0.1 1.1 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.1 0.2 GO:0032138 single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405)
0.1 0.2 GO:0052743 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.1 0.6 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.1 0.6 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.0 0.7 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.3 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.0 0.3 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.0 0.3 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.0 0.1 GO:0004046 aminoacylase activity(GO:0004046)
0.0 0.5 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 0.1 GO:0004860 protein kinase inhibitor activity(GO:0004860)
0.0 1.4 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.0 0.4 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.6 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.3 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.0 0.1 GO:0015434 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.0 0.7 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 1.1 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.9 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.0 0.6 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 0.4 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.4 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.0 1.3 GO:0043621 protein self-association(GO:0043621)
0.0 0.2 GO:0052736 beta-glucanase activity(GO:0052736)
0.0 0.3 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.3 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.5 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.1 GO:0010334 sesquiterpene synthase activity(GO:0010334)
0.0 0.3 GO:0004525 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)
0.0 0.5 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.0 0.1 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.3 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.6 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.1 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 0.4 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.0 0.2 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.0 0.8 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 1.5 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.0 0.2 PID P38 ALPHA BETA DOWNSTREAM PATHWAY Signaling mediated by p38-alpha and p38-beta
0.0 0.1 PID CDC42 PATHWAY CDC42 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.1 0.3 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.1 1.1 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.2 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.1 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease