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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G72740
Z-value: 1.89
Transcription factors associated with AT1G72740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G72740
|
AT1G72740 | Homeodomain-like/winged-helix DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G72740 | arTal_v1_Chr1_-_27382924_27382924 | 0.27 | 3.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 4.13 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 3.34 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 3.13 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr1_-_1248826_1248876 Show fit | 2.90 |
AT1G04570.2
AT1G04570.1 |
Major facilitator superfamily protein |
|
| arTal_v1_Chr3_-_8085669_8085669 Show fit | 2.12 |
AT3G22840.1
|
Chlorophyll A-B binding family protein |
|
| arTal_v1_Chr5_+_17987591_17987591 Show fit | 1.93 |
AT5G44590.2
AT5G44590.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr5_+_22467337_22467337 Show fit | 1.90 |
AT5G55450.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_5705541_5705541 Show fit | 1.70 |
AT3G16770.1
|
ethylene-responsive element binding protein |
|
| arTal_v1_Chr5_-_18189523_18189523 Show fit | 1.66 |
AT5G45070.1
|
phloem protein 2-A8 |
|
| arTal_v1_Chr5_+_25328119_25328119 Show fit | 1.61 |
AT5G63140.1
|
purple acid phosphatase 29 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G72740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 27.1 | GO:0006412 | translation(GO:0006412) |
| 0.4 | 14.5 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.3 | 10.8 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
| 0.1 | 7.8 | GO:0042274 | ribosomal small subunit biogenesis(GO:0042274) |
| 0.1 | 5.3 | GO:0009682 | induced systemic resistance(GO:0009682) |
| 0.1 | 4.0 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.0 | 4.0 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.1 | 3.9 | GO:0006606 | protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744) |
| 0.3 | 3.7 | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463) |
| 0.1 | 3.6 | GO:0040034 | regulation of development, heterochronic(GO:0040034) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 39.0 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.2 | 23.4 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.1 | 21.6 | GO:0005730 | nucleolus(GO:0005730) |
| 0.2 | 9.1 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.5 | 5.0 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
| 0.1 | 5.0 | GO:0005819 | spindle(GO:0005819) |
| 0.0 | 3.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.3 | 3.3 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.1 | 2.9 | GO:0005643 | nuclear pore(GO:0005643) |
| 0.7 | 2.7 | GO:0042788 | polysomal ribosome(GO:0042788) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 36.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 28.9 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 7.7 | GO:0003723 | RNA binding(GO:0003723) |
| 0.1 | 5.3 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.2 | 5.0 | GO:0030515 | snoRNA binding(GO:0030515) |
| 0.1 | 5.0 | GO:0043621 | protein self-association(GO:0043621) |
| 0.3 | 4.5 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 4.0 | GO:0042393 | histone binding(GO:0042393) |
| 0.0 | 4.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.7 | 3.3 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 1.0 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.2 | 1.0 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.2 | 0.8 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.6 | 0.6 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 0.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.3 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.1 | 0.3 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 4.1 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.6 | 1.8 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 1.6 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.2 | 1.2 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
| 0.2 | 1.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.3 | 1.0 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.3 | 1.0 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.0 | 1.0 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
| 0.1 | 0.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.2 | 0.8 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |